mRNA_H-paniculata_contig1004.42.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1004.42.1
Unique NamemRNA_H-paniculata_contig1004.42.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1004.42.1 vs. uniprot
Match: D7G3J0_ECTSI (Kinetochore protein SPC25 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J0_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.590e-26
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 KKISRTDPDRPFVIAVRIDEAGRYAVPECFPMLPKNDFEQMLADVNESNDFAAFVSRVRRGFVTLADAGL 210
            ++ISR +P+RPFVIAV ID+ GRY VPECFP LP  D  +ML DVNESNDFA FVSRVRRGFV++A+AGL
Sbjct:  181 RQISRQEPERPFVIAVFIDDNGRYVVPECFPALPTEDLNRMLEDVNESNDFAKFVSRVRRGFVSMAEAGL 250
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BLAST of mRNA_H-paniculata_contig1004.42.1 vs. uniprot
Match: W7TNF4_9STRA (Kinetochore protein SPC25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.200e-8
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    4 KISRTDPDRPFVIAVRIDEAGRYAVPECFPMLPKNDFEQMLADVNESNDFAAFVSRVRRGF 186
            ++  T+P R +  +V IDEA RY V EC P L     + ++A++N++NDFA FV ++RR F
Sbjct:  179 QLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAF 239
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BLAST of mRNA_H-paniculata_contig1004.42.1 vs. uniprot
Match: A0A835TAV4_CHLIN (Kinetochore protein SPC25 n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TAV4_CHLIN)

HSP 1 Score: 53.9 bits (128), Expect = 2.550e-7
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    7 ISRTDPDRPFVIAVRIDEAGRYAVPECFPMLPKNDFEQMLADVNESNDFAAFVSRVRRGFVTLA 198
            I   + DR F I+VRI +   Y+V  C PM+P    E++ A+VN +NDFAAFV  VR+ FV +A
Sbjct:   79 IDAFEQDREFCISVRITD-NVYSVTRCEPMVP--GLEELTAEVNRTNDFAAFVKSVRKAFVAVA 139
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BLAST of mRNA_H-paniculata_contig1004.42.1 vs. uniprot
Match: A0A836BSI2_9CHLO (Kinetochore protein SPC25 n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BSI2_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 2.100e-5
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   19 DPDRPFVIAVRIDEAGRYAVPECFPMLPKNDFEQMLADVNESNDFAAFVSRVRRGFVTLA 198
            D D+ F+++VRI     Y V  C PM+P    E++ A+VN SNDFAAFV  VR  FV  A
Sbjct:  139 DTDKEFLLSVRIT-GDTYQVTRCEPMVPW--LEELTAEVNRSNDFAAFVKGVRARFVEAA 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1004.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3J0_ECTSI1.590e-2671.43Kinetochore protein SPC25 n=2 Tax=Ectocarpus TaxID... [more]
W7TNF4_9STRA2.200e-842.62Kinetochore protein SPC25 n=2 Tax=Monodopsidaceae ... [more]
A0A835TAV4_CHLIN2.550e-746.88Kinetochore protein SPC25 n=1 Tax=Chlamydomonas in... [more]
A0A836BSI2_9CHLO2.100e-548.33Kinetochore protein SPC25 n=1 Tax=Edaphochlamys de... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1004contigH-paniculata_contig1004:29812..30024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3.5e-21
Seed eggNOG ortholog2880.D7G3J0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chromosome segregation protein Spc25
EggNOG OGs2E6HU@1,2SD7D@2759
Ec32 ortholog descriptionChromosome segregation protein Spc25
Ec32 orthologEc-19_004790.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928711.6065657-CDS-H-paniculata_contig1004:29811..300241622928711.6065657-CDS-H-paniculata_contig1004:29811..30024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1004 29812..30024 -
1691480588.4507458-CDS-H-paniculata_contig1004:29811..300241691480588.4507458-CDS-H-paniculata_contig1004:29811..30024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1004 29812..30024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1004.42.1prot_H-paniculata_contig1004.42.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1004 29812..30024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1004.42.1

>prot_H-paniculata_contig1004.42.1 ID=prot_H-paniculata_contig1004.42.1|Name=mRNA_H-paniculata_contig1004.42.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
KKISRTDPDRPFVIAVRIDEAGRYAVPECFPMLPKNDFEQMLADVNESND
FAAFVSRVRRGFVTLADAGL*
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mRNA from alignment at H-paniculata_contig1004:29812..30024-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1004.42.1 ID=mRNA_H-paniculata_contig1004.42.1|Name=mRNA_H-paniculata_contig1004.42.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig1004:29812..30024- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAAGATATCCCGGACCGACCCGGATCGGCCGTTTGTGATTGCGGTCCG
CATCGATGAGGCGGGTCGCTACGCGGTCCCCGAATGCTTCCCGATGCTGC
CCAAGAATGATTTCGAGCAGATGCTTGCAGACGTGAATGAGTCTAATGAC
TTCGCTGCCTTTGTCTCGAGGGTACGGCGAGGATTCGTCACTCTCGCCGA
CGCAGGCTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1004:29812..30024-

>mRNA_H-paniculata_contig1004.42.1 ID=mRNA_H-paniculata_contig1004.42.1|Name=mRNA_H-paniculata_contig1004.42.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig1004:29812..30024- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAAGATATCCCGGACCGACCCGGATCGGCCGTTTGTGATTGCGGTCCG
CATCGATGAGGCGGGTCGCTACGCGGTCCCCGAATGCTTCCCGATGCTGC
CCAAGAATGATTTCGAGCAGATGCTTGCAGACGTGAATGAGTCTAATGAC
TTCGCTGCCTTTGTCTCGAGGGTACGGCGAGGATTCGTCACTCTCGCCGA
CGCAGGCTTGTAGAAAAAGATATCCCGGACCGACCCGGATCGGCCGTTTG
TGATTGCGGTCCGCATCGATGAGGCGGGTCGCTACGCGGTCCCCGAATGC
TTCCCGATGCTGCCCAAGAATGATTTCGAGCAGATGCTTGCAGACGTGAA
TGAGTCTAATGACTTCGCTGCCTTTGTCTCGAGGGTACGGCGAGGATTCG
TCACTCTCGCCGACGCAGGCTTGTAG
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