mRNA_H-paniculata_contig1002.32.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1002.32.1
Unique NamemRNA_H-paniculata_contig1002.32.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: A0A6H5KU31_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.280e-34
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTL+HVL LR+AVYDMPT+ +NS  ++ALALQRVFYRLQT++KSVGTKELTKSFGWDAYDSFTQ
Sbjct:  421 QGATCYMNSLLQTLYHVLSLRRAVYDMPTEEENSVTSMALALQRVFYRLQTSNKSVGTKELTKSFGWDAYDSFTQ 495
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BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: D8LL31_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL31_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.740e-34
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTL+HVL LR+AVYDMPT+ +NS  ++ALALQRVFYRLQT+ KSVGTKELTKSFGWDAYDSFTQ
Sbjct:  377 QGATCYMNSLLQTLYHVLSLRRAVYDMPTEEENSVTSMALALQRVFYRLQTSSKSVGTKELTKSFGWDAYDSFTQ 451
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BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: UPI000C6DC6A8 (ubiquitin carboxyl-terminal hydrolase 7-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DC6A8)

HSP 1 Score: 115 bits (288), Expect = 1.620e-31
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTLF    LRKAVY MPT+ D+S R+VALALQRVFY LQ +DK VGTK+LTKSFGW+  DSF Q
Sbjct:   49 QGATCYMNSLLQTLFFTNQLRKAVYQMPTESDDSSRSVALALQRVFYELQFSDKPVGTKKLTKSFGWETLDSFMQ 123
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BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: A0A0E9SAY3_ANGAN (USP domain-containing protein n=1 Tax=Anguilla anguilla TaxID=7936 RepID=A0A0E9SAY3_ANGAN)

HSP 1 Score: 112 bits (280), Expect = 1.500e-30
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTLF    LR+AVY MPT+GD+S ++V LALQRVFY LQ +DK VGTK+LTKSFGW+  DSF Q
Sbjct:   22 QGATCYMNSLLQTLFFTNQLRRAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQ 96
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BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: A0A1S3RDH7_SALSA (Ubiquitin carboxyl-terminal hydrolase 7 n=1 Tax=Salmo salar TaxID=8030 RepID=A0A1S3RDH7_SALSA)

HSP 1 Score: 112 bits (280), Expect = 2.190e-29
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTLF    LR+AVY MPT+GD+S ++V LALQRVFY LQ +DK VGTK+LTKSFGW+  DSF Q
Sbjct:  120 QGATCYMNSLLQTLFFTNQLRRAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQ 194
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BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: UPI000C6EB253 (ubiquitin carboxyl-terminal hydrolase 7-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6EB253)

HSP 1 Score: 115 bits (288), Expect = 3.260e-29
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTLF    LRKAVY MPT+ D+S R+VALALQRVFY LQ +DK VGTK+LTKSFGW+  DSF Q
Sbjct:  253 QGATCYMNSLLQTLFFTNQLRKAVYQMPTESDDSSRSVALALQRVFYELQFSDKPVGTKKLTKSFGWETLDSFMQ 327
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BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: UPI0013F33D60 (ubiquitin carboxyl-terminal hydrolase 7-like isoform X3 n=1 Tax=Lontra canadensis TaxID=76717 RepID=UPI0013F33D60)

HSP 1 Score: 113 bits (283), Expect = 6.270e-29
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTLF    LRKAVY MPT+GD+S ++V LALQRVFY LQ +DK VGTK+LTKSFGW+  DSF Q
Sbjct:  223 QGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQ 297
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BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: A0A067CK46_SAPPC (Ubiquitinyl hydrolase 1 n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CK46_SAPPC)

HSP 1 Score: 117 bits (292), Expect = 8.130e-29
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTLFH+   RKAVYD PT  D+S  +V LALQRVFYRL+TADK+V TKELTKSFGW   D+FTQ
Sbjct:  244 QGATCYMNSLLQTLFHLAPFRKAVYDTPTADDDSATSVVLALQRVFYRLETADKAVSTKELTKSFGWSHMDAFTQ 318
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BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: A0A1V9Z6J6_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z6J6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.110e-28
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTLFH+   RKAVYD PT  D+S  +V LALQRVFYRL+T+DK+V TKELTKSFGW   D+FTQ
Sbjct:  171 QGATCYMNSLLQTLFHLAPFRKAVYDTPTTDDDSANSVVLALQRVFYRLETSDKAVSTKELTKSFGWSHMDAFTQ 245
[Close]
BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Match: UPI001E1C0F4C (ubiquitin carboxyl-terminal hydrolase 7-like n=2 Tax=Phyllostomidae TaxID=9415 RepID=UPI001E1C0F4C)

HSP 1 Score: 113 bits (283), Expect = 1.130e-28
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QGATCYMNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSVGTKELTKSFGWDAYDSFTQ 225
            QGATCYMNSLLQTLF    LRKAVY MPT+GD+S ++V LALQRVFY LQ +DK VGTK+LTKSFGW+  DSF Q
Sbjct:  264 QGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQ 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1002.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU31_9PHAE1.280e-3484.00USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LL31_ECTSI1.740e-3484.00USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI000C6DC6A81.620e-3174.67ubiquitin carboxyl-terminal hydrolase 7-like n=1 T... [more]
A0A0E9SAY3_ANGAN1.500e-3072.00USP domain-containing protein n=1 Tax=Anguilla ang... [more]
A0A1S3RDH7_SALSA2.190e-2972.00Ubiquitin carboxyl-terminal hydrolase 7 n=1 Tax=Sa... [more]
UPI000C6EB2533.260e-2974.67ubiquitin carboxyl-terminal hydrolase 7-like n=1 T... [more]
UPI0013F33D606.270e-2973.33ubiquitin carboxyl-terminal hydrolase 7-like isofo... [more]
A0A067CK46_SAPPC8.130e-2974.67Ubiquitinyl hydrolase 1 n=1 Tax=Saprolegnia parasi... [more]
A0A1V9Z6J6_9STRA1.110e-2873.33Ubiquitinyl hydrolase 1 n=1 Tax=Achlya hypogyna Ta... [more]
UPI001E1C0F4C1.130e-2873.33ubiquitin carboxyl-terminal hydrolase 7-like n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1002contigH-paniculata_contig1002:28400..29072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue8.7e-25
Seed eggNOG ortholog2880.D8LL31
KEGG koko:K11838
KEGG Pathwayko04068,ko05168,ko05169,ko05203,map04068,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1863@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons2
Model size225
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1002.32.1prot_H-paniculata_contig1002.32.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1002 28418..29072 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928710.1750793-UTR-H-paniculata_contig1002:28399..284171622928710.1750793-UTR-H-paniculata_contig1002:28399..28417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1002 28400..28417 +
1691480587.583172-UTR-H-paniculata_contig1002:28399..284171691480587.583172-UTR-H-paniculata_contig1002:28399..28417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1002 28400..28417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928710.1963766-CDS-H-paniculata_contig1002:28417..285001622928710.1963766-CDS-H-paniculata_contig1002:28417..28500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 28418..28500 +
1691480587.5929754-CDS-H-paniculata_contig1002:28417..285001691480587.5929754-CDS-H-paniculata_contig1002:28417..28500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 28418..28500 +
1622928710.2128735-CDS-H-paniculata_contig1002:28948..290721622928710.2128735-CDS-H-paniculata_contig1002:28948..29072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 28949..29072 +
1691480587.6030812-CDS-H-paniculata_contig1002:28948..290721691480587.6030812-CDS-H-paniculata_contig1002:28948..29072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 28949..29072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1002.32.1

>prot_H-paniculata_contig1002.32.1 ID=prot_H-paniculata_contig1002.32.1|Name=mRNA_H-paniculata_contig1002.32.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MNSLLQTLFHVLCLRKAVYDMPTDGDNSGRNVALALQRVFYRLQTADKSV
GTKELTKSFGWDAYDSFTQ
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mRNA from alignment at H-paniculata_contig1002:28400..29072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1002.32.1 ID=mRNA_H-paniculata_contig1002.32.1|Name=mRNA_H-paniculata_contig1002.32.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=673bp|location=Sequence derived from alignment at H-paniculata_contig1002:28400..29072+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCGCAACGTGCTACATGAACAGCCTGCTGCAAACGCTGTTCCACGT
GCTCTGTCTGCGCAAGGCCGTGTATGACATGCCTACCGACGGAGACAATA
GGTCAGTGTATGGGTTAAAGCAAGTGTGTGAGGGTGGGAGGGGCGGGGGT
GGGGGTGGGGGTGGGGGTGGGGGTGGAGTCACTTGTCGAGTAGGAAACTG
GGGGGTATGATGGATGCAAATTTGCGTGAGTCGATGTTGTCTCTCTCGAT
CTTGGTTATTCGACAATATGTGCTGCTTTTGTCGTGTTAAGAGGGATGAT
TCCAAATGATATTGGTTCGGCGCTTCTTTTTTTTGTGTGTGTGTTTTATT
CATGTTTTGACCAGCGATAAGAATGAGGCTGAGGGAGTTGTTTGAATGTT
GCATGTTGGATTTTTTGGAGTTCTGTAGCAGATGCGATGGTGCCTCATTT
CCTGGAAACTCTCTCTCGCTCTCTCTCTTTTTGTCTCGCTGTTTTTCACT
CTCCACTTTCTCGCGTGATGTCGTGGTGTGCTTTGTTGGGTATACTCAGC
GGTAGGAACGTAGCGCTGGCCCTTCAGCGTGTTTTCTACCGTCTGCAGAC
TGCCGACAAGTCGGTGGGCACGAAAGAGCTCACTAAGTCCTTCGGATGGG
ACGCGTATGACTCCTTCACCCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1002:28400..29072+

>mRNA_H-paniculata_contig1002.32.1 ID=mRNA_H-paniculata_contig1002.32.1|Name=mRNA_H-paniculata_contig1002.32.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig1002:28400..29072+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAGCCTGCTGCAAACGCTGTTCCACGTGCTCTGTCTGCGCAAGGC
CGTGTATGACATGCCTACCGACGGAGACAATAGATGAACAGCCTGCTGCA
AACGCTGTTCCACGTGCTCTGTCTGCGCAAGGCCGTGTATGACATGCCTA
CCGACGGAGACAATAGCGGTAGGAACGTAGCGCTGGCCCTTCAGCGTGTT
TTCTACCGTCTGCAGACTGCCGACAAGTCGGTGGGCACGAAAGAGCTCAC
TAAGTCCTTCGGATGGGACGCGTATGACTCCTTCACCCAACGGTAGGAAC
GTAGCGCTGGCCCTTCAGCGTGTTTTCTACCGTCTGCAGACTGCCGACAA
GTCGGTGGGCACGAAAGAGCTCACTAAGTCCTTCGGATGGGACGCGTATG
ACTCCTTCACCCAA
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