mRNA_H-paniculata_contig1002.28.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1002.28.1
Unique NamemRNA_H-paniculata_contig1002.28.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: A0A6H5K1C9_9PHAE (Ribosomal_L18A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1C9_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 1.890e-115
Identity = 166/176 (94.32%), Postives = 172/176 (97.73%), Query Frame = 1 
Query:    1 VAMRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTHRLPRAPKKKFRSTFKASRPTTFLG 528
            V MRQYQVVGRKA TEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDI+ELTEKN R+IKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYS+MAGRHRCRPRSIQIIRTGIVAAKDTKRPDV+QFH +KIKFPLTHRLPRAPKKKFR+TFKASRPTTFLG
Sbjct:   30 VVMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNSRIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSQMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVKQFHSAKIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 205
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: A0A835YZJ5_9STRA (Ribosomal protein L18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ5_9STRA)

HSP 1 Score: 296 bits (759), Expect = 2.440e-96
Identity = 141/174 (81.03%), Postives = 153/174 (87.93%), Query Frame = 1 
Query:    7 MRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTHRLPRAPKKKFRSTFKASRPTTFLG 528
            MRQYQVVGRKAPTE +PNPP YRMKVFA  +V   S FWYL+HQMRKMKKTTGEILD+ E+ EKN R+IK+YGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKR  V+QF +S+IKFPL HR+PR P KKFR+ FKA RP TF G
Sbjct:   35 MRQYQVVGRKAPTEADPNPPAYRMKVFAATKVGAISSFWYLIHQMRKMKKTTGEILDVNEIVEKNARIIKHYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRAPVKQFQNSQIKFPLAHRIPREPSKKFRTVFKAQRPNTFFG 208
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: A0A8D0YIJ2_PIG (60S ribosomal protein L18a n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0YIJ2_PIG)

HSP 1 Score: 290 bits (742), Expect = 1.230e-94
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 1 
Query:    1 VAMRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKF 444
            VAMRQYQVVGRKAPT+KEPNP VYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIE+TEKN R+IKNYGIWLRYDSRSGTHNMYREYRDL+LTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFH++KI F
Sbjct:    2 VAMRQYQVVGRKAPTDKEPNPAVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIEITEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLSLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNAKINF 149
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: H3H534_PHYRM (60S ribosomal protein L18a n=3 Tax=Phytophthora TaxID=4783 RepID=H3H534_PHYRM)

HSP 1 Score: 279 bits (714), Expect = 5.070e-90
Identity = 129/174 (74.14%), Postives = 153/174 (87.93%), Query Frame = 1 
Query:    7 MRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTHRLPRAPKKKFRSTFKASRPTTFLG 528
            +RQ+QVVGRKAPTEKEPNPP YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILD+ ELTEKN R++KNYG+W+RY+SRSGTHNMY+EYRDLTL  AV+QMY+E+AGRHR RPRSIQI+RT IVAAKDT++  ++Q+HDSKI FPL+HRLPRAP+K   S FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDVNELTEKNRRIVKNYGVWIRYNSRSGTHNMYKEYRDLTLCKAVEQMYAELAGRHRARPRSIQIMRTAIVAAKDTQKHGLKQYHDSKISFPLSHRLPRAPEKHLNSVFKASRPCTFRG 176
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: K3WCT5_GLOUD (60S ribosomal protein L18a n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCT5_GLOUD)

HSP 1 Score: 279 bits (714), Expect = 5.070e-90
Identity = 131/174 (75.29%), Postives = 153/174 (87.93%), Query Frame = 1 
Query:    7 MRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTHRLPRAPKKKFRSTFKASRPTTFLG 528
            +RQ+QVVGRKAPTEKEPNPP YRMK+FAPNEV   S+FWY +HQM+KMKKTTGEILD+ ELTEKN R++ NYGIW+RY+SRSGTHNMY+EYRD+TL  AV+QMYSE+AGRHR RPRSIQI+RT IVAAKDTK+ +VQQFHDSKIKFPL+HR+ R   K  R+ FKA+RPTTF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDVNELTEKNKRIVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLSHRIARPSTKNQRTVFKANRPTTFRG 176
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: M4BR55_HYAAE (60S ribosomal protein L18a n=19 Tax=Peronosporaceae TaxID=4777 RepID=M4BR55_HYAAE)

HSP 1 Score: 278 bits (711), Expect = 1.440e-89
Identity = 132/174 (75.86%), Postives = 153/174 (87.93%), Query Frame = 1 
Query:    7 MRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTHRLPRAPKKKFRSTFKASRPTTFLG 528
            +RQ+QVVGRKAPTEKEPNPP YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILDI ELTEKN RVI NYGIW+RY+SRSGTHNMY+EYRD+T+  AV+QMYSE+AGRHR RPRSIQI+RT IVAAKD+K+ +VQQFHDSKI FPL+HRLPRA +K  ++ FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNSRVINNYGIWIRYNSRSGTHNMYKEYRDVTMCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDSKKLNVQQFHDSKIAFPLSHRLPRAAEKHQKTVFKASRPCTFRG 176
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: A0A5D6XXS3_9STRA (Ribosomal_L18A domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXS3_9STRA)

HSP 1 Score: 279 bits (714), Expect = 3.790e-89
Identity = 131/174 (75.29%), Postives = 153/174 (87.93%), Query Frame = 1 
Query:    7 MRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTHRLPRAPKKKFRSTFKASRPTTFLG 528
            +RQ+QVVGRKAPTEKEPNPP YRMK+FAPNEV   S+FWY +HQM+KMKKTTGEILDI ELTEKN R++KNYGIW+RY+SRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR RPRSIQI+RT IVAAKDTK+ +VQQFHDSKIKFPL  R+PR   K  R+ FKA+RPTTF G
Sbjct:   62 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDINELTEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLARRIPRPATKDQRTVFKANRPTTFRG 235
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: A0A2D4C8D4_PYTIN (60S ribosomal protein L18a n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8D4_PYTIN)

HSP 1 Score: 283 bits (724), Expect = 1.040e-88
Identity = 131/174 (75.29%), Postives = 153/174 (87.93%), Query Frame = 1 
Query:    7 MRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTHRLPRAPKKKFRSTFKASRPTTFLG 528
            +R +QVVGRKAPT+KEPNPP YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILD+ EL EKN R++KNYGIW+RY+SRSGTHNMY+EYRDLTL GAVDQ+YSE+AGRHR RPRSIQI+RT +VAAKDTK+ +VQQFHDSKIKFPL+HR+PR   K  R+ FKASRPTTF G
Sbjct:  200 IRHFQVVGRKAPTDKEPNPPAYRMKLFAPNAVIAKSRFWYFLHQMKKMKKTTGEILDVNELVEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDLTLCGAVDQLYSELAGRHRARPRSIQIMRTAVVAAKDTKKANVQQFHDSKIKFPLSHRIPRPSIKNHRTVFKASRPTTFRG 373
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: A0A8K1FN02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN02_PYTOL)

HSP 1 Score: 273 bits (699), Expect = 9.310e-88
Identity = 127/174 (72.99%), Postives = 151/174 (86.78%), Query Frame = 1 
Query:    7 MRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTHRLPRAPKKKFRSTFKASRPTTFLG 528
            +RQ+QVVGRKAPT+KEPNPP YRMK+FA NEV   S+FWY +HQM+KMKKTTGEILDI E+TEKN RV+ NYGIW+RY+SRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR RPRSIQI+RT IVAAKDTK+ +VQQFHD+ IKFPL+HR+PR   K  R+ FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTDKEPNPPAYRMKIFAANEVLAKSRFWYFLHQMKKMKKTTGEILDINEITEKNNRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKGNVQQFHDANIKFPLSHRIPRPSIKNHRTVFKASRPCTFRG 176
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BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Match: A0A7S2XX70_9STRA (60S ribosomal protein L18a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX70_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.200e-85
Identity = 124/174 (71.26%), Postives = 150/174 (86.21%), Query Frame = 1 
Query:    7 MRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTHRLPRAPKKKFRSTFKASRPTTFLG 528
            MRQYQVVGRKAPT  EP PP+ RMK+FA N V   S+FWY +HQMRKMKKTTGEI+D+ E+TEKN RV+KNYGIW+RY+SRSGTHNM+RE+RDL LTGAVDQ+Y+EM+GRHR R  S+QIIRT ++ AKD KRP++ Q+HDSKIKFPLTH++ RAP KK R+TFKA+RPTT+ G
Sbjct:    3 MRQYQVVGRKAPTAAEPKPPLLRMKLFARNPVQAQSRFWYFIHQMRKMKKTTGEIVDVNEITEKNSRVVKNYGIWIRYNSRSGTHNMFREFRDLKLTGAVDQLYAEMSGRHRARFSSVQIIRTAVLDAKDCKRPNITQYHDSKIKFPLTHQIRRAPAKKHRTTFKATRPTTYYG 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1002.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1C9_9PHAE1.890e-11594.32Ribosomal_L18A domain-containing protein n=2 Tax=E... [more]
A0A835YZJ5_9STRA2.440e-9681.03Ribosomal protein L18 n=1 Tax=Tribonema minus TaxI... [more]
A0A8D0YIJ2_PIG1.230e-9493.9260S ribosomal protein L18a n=1 Tax=Sus scrofa TaxI... [more]
H3H534_PHYRM5.070e-9074.1460S ribosomal protein L18a n=3 Tax=Phytophthora Ta... [more]
K3WCT5_GLOUD5.070e-9075.2960S ribosomal protein L18a n=1 Tax=Globisporangium... [more]
M4BR55_HYAAE1.440e-8975.8660S ribosomal protein L18a n=19 Tax=Peronosporacea... [more]
A0A5D6XXS3_9STRA3.790e-8975.29Ribosomal_L18A domain-containing protein n=1 Tax=P... [more]
A0A2D4C8D4_PYTIN1.040e-8875.2960S ribosomal protein L18a n=1 Tax=Pythium insidio... [more]
A0A8K1FN02_PYTOL9.310e-8872.99Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2XX70_9STRA1.200e-8571.2660S ribosomal protein L18a n=1 Tax=Fibrocapsa japo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1002contigH-paniculata_contig1002:243..2859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.1
Seed ortholog evalue1.9e-92
Seed eggNOG ortholog2880.D8LL36
Preferred nameRPL20B
KEGG koko:K02882
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010154,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0016049,GO:0019538,GO:0022414,GO:0022625,GO:0022626,GO:0030054,GO:0030154,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044706,GO:0048316,GO:0048468,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0051704,GO:0055044,GO:0060560,GO:0061458,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2157@1,KOG0829@2759
Ec32 ortholog description60S ribosomal protein L18a
Ec32 orthologEc-26_003390.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons4
Model size1304
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1002.28.1prot_H-paniculata_contig1002.28.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1002 1016..2853 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928709.9160032-UTR-H-paniculata_contig1002:242..10151622928709.9160032-UTR-H-paniculata_contig1002:242..1015Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1002 243..1015 -
1691480587.3927047-UTR-H-paniculata_contig1002:242..10151691480587.3927047-UTR-H-paniculata_contig1002:242..1015Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1002 243..1015 -
1622928710.0065632-UTR-H-paniculata_contig1002:2853..28591622928710.0065632-UTR-H-paniculata_contig1002:2853..2859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1002 2854..2859 -
1691480587.487293-UTR-H-paniculata_contig1002:2853..28591691480587.487293-UTR-H-paniculata_contig1002:2853..2859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1002 2854..2859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928709.9340143-CDS-H-paniculata_contig1002:1015..11201622928709.9340143-CDS-H-paniculata_contig1002:1015..1120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 1016..1120 -
1691480587.40487-CDS-H-paniculata_contig1002:1015..11201691480587.40487-CDS-H-paniculata_contig1002:1015..1120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 1016..1120 -
1622928709.9483159-CDS-H-paniculata_contig1002:1441..15511622928709.9483159-CDS-H-paniculata_contig1002:1441..1551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 1442..1551 -
1691480587.4153612-CDS-H-paniculata_contig1002:1441..15511691480587.4153612-CDS-H-paniculata_contig1002:1441..1551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 1442..1551 -
1622928709.9683256-CDS-H-paniculata_contig1002:1957..20871622928709.9683256-CDS-H-paniculata_contig1002:1957..2087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 1958..2087 -
1691480587.4454288-CDS-H-paniculata_contig1002:1957..20871691480587.4454288-CDS-H-paniculata_contig1002:1957..2087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 1958..2087 -
1622928709.983363-CDS-H-paniculata_contig1002:2673..28531622928709.983363-CDS-H-paniculata_contig1002:2673..2853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 2674..2853 -
1691480587.4663875-CDS-H-paniculata_contig1002:2673..28531691480587.4663875-CDS-H-paniculata_contig1002:2673..2853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1002 2674..2853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1002.28.1

>prot_H-paniculata_contig1002.28.1 ID=prot_H-paniculata_contig1002.28.1|Name=mRNA_H-paniculata_contig1002.28.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
MRQYQVVGRKAPTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKK
TTGEILDIIELTEKNCRVIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAV
DQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHDSKIKFPLTH
RLPRAPKKKFRSTFKASRPTTFLG*
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mRNA from alignment at H-paniculata_contig1002:243..2859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1002.28.1 ID=mRNA_H-paniculata_contig1002.28.1|Name=mRNA_H-paniculata_contig1002.28.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2617bp|location=Sequence derived from alignment at H-paniculata_contig1002:243..2859- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCCATGCGACAGTACCAGGTGGTGGGCCGCAAGGCACCTACGGAAAA
GGAGCCTAACCCGCCTGTTTACAGGATGAAGGTATTTGCGCCAAATGAGG
TGACCGGAGCGTCTCAATTCTGGTACCTAATGCACCAGATGCGTAAGATG
AAGAAGACCACAGGAGAAATCCTTGACATCATCGAGGTCCGTCAGTAAAC
CTTACCTAGTGGTGGGTGACTTGATTATAAAATTTGTCTTGAAAGTTGAG
TCGTTTTGAGATGACGAAGCACTTAAGATAATATATGGAAGGCTACTGGA
GAGTACTGTAGTCACTGTCGGGTTGTTTTATTATGTGTAGACGTTTTTGT
AGGTTGCACCTGTATGCTAATTGTCCATTTATGGAGGAGTTTTAGTCTGT
ATGTACTCAACTCCCTCGACAATGAGAGCACTCGCCAATGTTCCGAACAG
AAGAGATAGGGTATTCGCCCGATTTGTACGTTGTTTCATGTGCTGCGAAT
CATGGATGACTCACTAATACTTGCGAATTGAATGGGCAAGGGGGGCATTT
TGTGTATGTGTCTGATTATTCTGAAACATAGAGCGAGTATACTCGAAAAA
GTCAAGTGCTCGTATTTCTCCGGGATTAGTATATTTTTTGTGCTGAATTT
GAAAACAAGTTCTTATTCCTATCCCTGTATTTTCGCCCGCCTGCCCCCCT
CGTGTTCGACGATGTCTGTACTCGTTCGTGTGTGGCTAATATTGGAATTC
GGGAACCCCCTCGGAAACACAGCTGACGGAGAAGAATTGCCGCGTGATCA
AGAATTACGGCATCTGGCTTCGTTACGACTCTCGCTCCGGCACGCACAAT
ATGTACCGCGAGTACAGGGACCTTACCCTGACCGGTGCTGTTGATCAGAT
GTGTGAGTGAGATTGCGACATGATCTTTTTGTTGAATAACGCTTGTGCAT
TTTCTGACAACAGCGAAGACACGATTGAGGCTAGTACCACATACTACAAA
AACAAGCCCTTCTTACTCCTTCCATTTGGAGCATAAACGGGTTCCACCTG
CATTCGACCTCTTCATGGCTGGACACTGTAATATTTGTCAATCCTGTAGT
AAGAGAATGTAGCCGATGTACTGTTGACGTTTCATGTGCCACGTCTTTCT
GCTGATGCTCCGATACGTGTTCGGCTGTTTTCGCCTGCCTGTATTACCGT
TCACTCACTCGAAACTTGTTTGCGGTGATACGGGGGACCCATCTAATTCC
GCTACTCCTACTAACCTAATACGGCCTCCTTGTCCTGGTGTGGACTGGGC
TCACGCAGACTCGGAGATGGCTGGTCGGCACAGGTGCCGCCCGCGATCTA
TTCAGATCATCCGTACAGGAATTGTTGCCGCCAAGGACACAAAGCGTCCT
GATGTTCAGCAGTTTCACGTGAGTCCCTCTTTTCCCTGCACATGATATGA
TTTGTACGCCCCACATGGGTAAACCGGGGCTCCCTGATTCATTGTTCACG
TGGATAGTCAGGGTGAAAGTGGTTTCTACGCGGTACATTTGCATTGACAT
TTGATTCGTTGCGTAGTTTATCGCTCCACAGAAGTTGTTCAGGTCGTCTC
GATCTTCGGTGCATCGTCAGTGATACAGTAAGTGTCTCCCAGTTAAAACA
ATCTCCATTTTTTCTTGTCATACCTTGGCCCTCATCGATTTTCCAATCCA
ATTCGTCGTTTGTGTCGCCACGGTGTTTTTCCTTTTCAGGACTCCAAGAT
TAAGTTCCCCCTGACGCACCGTCTGCCGCGCGCACCGAAGAAGAAGTTCA
GGTCCACTTTCAAGGCCTCACGCCCGACCACGTTCTTGGGCTAGGCGTAT
TTCCAGGAGATTTGGGCTAGCTGAGAATATTGTTTCTCTATGGGATTTGA
AATGATTCTCTTCGAAATACCGGTCATCTTTCTCGAAATGTGCGAAGCGA
AAACCGCATGCTGTCACTTTAATCGCAACTACACTTGTTGCAGTGGGCAC
GACCCTTTGCTTGGAGGATGTGGAGAGGGGAGGTGGGCTTTCAAGTGAAA
GATTGGGTCCCAGTGCTTGAATGGCGGTATGAACTTGTTCGGCAGTTTTT
GTCTGAAAAAATGCAAGGATTGCTTGTTTCGTGGGTGCATCTAGGGAAGG
CCTTGATGGAATGCGTGGGTCGATCAACACAGGCGCTGAAAAAAGATGAG
GCGAAATATCCTCTTGAACCATGCGTGAACTTTATGAGAGGTATTCGCTC
TCTGCTTGTTGATGTCGATACTTTGAGCGTCTGCCTTCATGTACAAGTCT
GGTAGAAGGGCAAGTGTCACGTGTTGACCGTACATGCGACCCATTTTGGG
TTGTTTGGCAGCCGACAACCCCATCTAGTATCGCTGTCTGATGCTGAAAC
ATGTTGAGAGATATCCTCGCATATTGCGGATTTCCTTCATAACACTTTCA
TACTATGGAGACGAAACGAAGACCTTGTAAAACGTCGATGGTGTTGGAAC
GCCAGTCGCGTGTAGTTGAAGAAACTCGTGGTTTTCGCCGGACATGATGT
CTCTTTTCTTCTCCGAATGAGAAATTTTCATGCCGCGCCCAGCTAAATCT
ATTCGAAATCATCCTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1002:243..2859-

>mRNA_H-paniculata_contig1002.28.1 ID=mRNA_H-paniculata_contig1002.28.1|Name=mRNA_H-paniculata_contig1002.28.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig1002:243..2859- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACAGTACCAGGTGGTGGGCCGCAAGGCACCTACGGAAAAGGAGCC
TAACCCGCCTGTTTACAGGATGAAGGTATTTGCGCCAAATGAGGTGACCG
GAGCGTCTCAATTCTGGTACCTAATGCACCAGATGCGTAAGATGAAGAAG
ACCACAGGAGAAATCCTTGACATCATCGAGATGCGACAGTACCAGGTGGT
GGGCCGCAAGGCACCTACGGAAAAGGAGCCTAACCCGCCTGTTTACAGGA
TGAAGGTATTTGCGCCAAATGAGGTGACCGGAGCGTCTCAATTCTGGTAC
CTAATGCACCAGATGCGTAAGATGAAGAAGACCACAGGAGAAATCCTTGA
CATCATCGAGCTGACGGAGAAGAATTGCCGCGTGATCAAGAATTACGGCA
TCTGGCTTCGTTACGACTCTCGCTCCGGCACGCACAATATGTACCGCGAG
TACAGGGACCTTACCCTGACCGGTGCTGTTGATCAGATGTCTGACGGAGA
AGAATTGCCGCGTGATCAAGAATTACGGCATCTGGCTTCGTTACGACTCT
CGCTCCGGCACGCACAATATGTACCGCGAGTACAGGGACCTTACCCTGAC
CGGTGCTGTTGATCAGATGTACTCGGAGATGGCTGGTCGGCACAGGTGCC
GCCCGCGATCTATTCAGATCATCCGTACAGGAATTGTTGCCGCCAAGGAC
ACAAAGCGTCCTGATGTTCAGCAGTTTCACACTCGGAGATGGCTGGTCGG
CACAGGTGCCGCCCGCGATCTATTCAGATCATCCGTACAGGAATTGTTGC
CGCCAAGGACACAAAGCGTCCTGATGTTCAGCAGTTTCACGACTCCAAGA
TTAAGTTCCCCCTGACGCACCGTCTGCCGCGCGCACCGAAGAAGAAGTTC
AGGTCCACTTTCAAGGCCTCACGCCCGACCACGTTCTTGGGCTAGGACTC
CAAGATTAAGTTCCCCCTGACGCACCGTCTGCCGCGCGCACCGAAGAAGA
AGTTCAGGTCCACTTTCAAGGCCTCACGCCCGACCACGTTCTTGGGCTAG
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