mRNA_H-paniculata_contig10018.26.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10018.26.1
Unique NamemRNA_H-paniculata_contig10018.26.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: A0A7J7RPJ5_RHIFE (Lysine demethylase 2B n=1 Tax=Rhinolophus ferrumequinum TaxID=59479 RepID=A0A7J7RPJ5_RHIFE)

HSP 1 Score: 57.8 bits (138), Expect = 1.130e-9
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV 111
            RC +C  CL TEC  C FCKDM K+GGPGR++Q+ ++
Sbjct:   52 RCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIM 88
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BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: A0A2D4JJQ3_MICLE (CXXC-type domain-containing protein (Fragment) n=1 Tax=Micrurus lemniscatus lemniscatus TaxID=129467 RepID=A0A2D4JJQ3_MICLE)

HSP 1 Score: 57.8 bits (138), Expect = 1.610e-9
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV 111
            RC +C  CL TEC  C FCKDM K+GGPGR++Q+ ++
Sbjct:   52 RCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIM 88
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BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: A0A455B143_PHYMC (lysine-specific demethylase 2B-like n=1 Tax=Physeter macrocephalus TaxID=9755 RepID=A0A455B143_PHYMC)

HSP 1 Score: 57.8 bits (138), Expect = 2.180e-9
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV 111
            RC +C  CL TEC  C FCKDM K+GGPGR++Q+ ++
Sbjct:   52 RCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIM 88
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BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: A0A5C6NUN2_9TELE (F-box/LRR-repeat protein 19 F-box and leucine-rich repeat protein 19 n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6NUN2_9TELE)

HSP 1 Score: 55.8 bits (133), Expect = 2.220e-9
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV 111
            RC  C  C+ TEC  C FCKDM K+GGPGR++Q+ ++
Sbjct:   21 RCRRCQACMRTECGECHFCKDMKKFGGPGRMKQSCLL 57
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BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: UPI0018D6E920 (lysine-specific demethylase 2B-like isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6E920)

HSP 1 Score: 59.3 bits (142), Expect = 3.080e-9
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV 111
            RC +C  CL+ +CR C FCKDM KYGGPGR++Q+ V 
Sbjct:  636 RCRKCENCLSDDCRDCHFCKDMKKYGGPGRMKQSCVA 672
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BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: A0A090XCE6_CORC0 (Transient receptor potential-like protein (Fragment) n=1 Tax=Corticium candelabrum TaxID=121492 RepID=A0A090XCE6_CORC0)

HSP 1 Score: 59.3 bits (142), Expect = 3.090e-9
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASV 108
            RCGEC GCLA++C  C+FC DM KYGG G++RQA +
Sbjct:  553 RCGECTGCLASDCIDCRFCLDMIKYGGTGKLRQACM 588
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BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: UPI00189BBB2C (lysine-specific demethylase 2B n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189BBB2C)

HSP 1 Score: 57.8 bits (138), Expect = 3.470e-9
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV 111
            RC +C  CL TEC  C FCKDM K+GGPGR++Q+ ++
Sbjct:   52 RCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIM 88
[Close]
BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: A0A6P8S006_GEOSA (lysine-specific demethylase 2B isoform X2 n=6 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8S006_GEOSA)

HSP 1 Score: 58.5 bits (140), Expect = 5.750e-9
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV 111
            RC +C  CL TEC  C FCKDM K+GGPGR++Q+ ++
Sbjct:  575 RCRKCEACLRTECGACHFCKDMKKFGGPGRMKQSCIM 611
[Close]
BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: A0A6P8S2U9_GEOSA (lysine-specific demethylase 2B isoform X3 n=4 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8S2U9_GEOSA)

HSP 1 Score: 58.5 bits (140), Expect = 5.750e-9
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV 111
            RC +C  CL TEC  C FCKDM K+GGPGR++Q+ ++
Sbjct:  575 RCRKCEACLRTECGACHFCKDMKKFGGPGRMKQSCIM 611
[Close]
BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Match: A0A6P8S237_GEOSA (lysine-specific demethylase 2B isoform X5 n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8S237_GEOSA)

HSP 1 Score: 58.5 bits (140), Expect = 5.750e-9
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV 111
            RC +C  CL TEC  C FCKDM K+GGPGR++Q+ ++
Sbjct:  575 RCRKCEACLRTECGACHFCKDMKKFGGPGRMKQSCIM 611
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10018.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J7RPJ5_RHIFE1.130e-956.76Lysine demethylase 2B n=1 Tax=Rhinolophus ferrumeq... [more]
A0A2D4JJQ3_MICLE1.610e-956.76CXXC-type domain-containing protein (Fragment) n=1... [more]
A0A455B143_PHYMC2.180e-956.76lysine-specific demethylase 2B-like n=1 Tax=Physet... [more]
A0A5C6NUN2_9TELE2.220e-954.05F-box/LRR-repeat protein 19 F-box and leucine-rich... [more]
UPI0018D6E9203.080e-959.46lysine-specific demethylase 2B-like isoform X1 n=2... [more]
A0A090XCE6_CORC03.090e-963.89Transient receptor potential-like protein (Fragmen... [more]
UPI00189BBB2C3.470e-956.76lysine-specific demethylase 2B n=1 Tax=Nematolebia... [more]
A0A6P8S006_GEOSA5.750e-956.76lysine-specific demethylase 2B isoform X2 n=6 Tax=... [more]
A0A6P8S2U9_GEOSA5.750e-956.76lysine-specific demethylase 2B isoform X3 n=4 Tax=... [more]
A0A6P8S237_GEOSA5.750e-956.76lysine-specific demethylase 2B isoform X5 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10018contigH-paniculata_contig10018:807..917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928709.5631516-CDS-H-paniculata_contig10018:806..9171622928709.5631516-CDS-H-paniculata_contig10018:806..917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 807..917 -
1691480587.2823524-CDS-H-paniculata_contig10018:806..9171691480587.2823524-CDS-H-paniculata_contig10018:806..917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10018 807..917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10018.26.1prot_H-paniculata_contig10018.26.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10018 807..917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10018.26.1

>prot_H-paniculata_contig10018.26.1 ID=prot_H-paniculata_contig10018.26.1|Name=mRNA_H-paniculata_contig10018.26.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
RCGECPGCLATECRICKFCKDMPKYGGPGRVRQASVV
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mRNA from alignment at H-paniculata_contig10018:807..917-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10018.26.1 ID=mRNA_H-paniculata_contig10018.26.1|Name=mRNA_H-paniculata_contig10018.26.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig10018:807..917- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCGGAGAGTGCCCGGGATGTCTCGCGACGGAGTGCCGTATATGCAA
GTTCTGCAAGGACATGCCTAAGTACGGAGGTCCTGGCCGCGTCCGTCAGG
CAAGCGTTGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig10018:807..917-

>mRNA_H-paniculata_contig10018.26.1 ID=mRNA_H-paniculata_contig10018.26.1|Name=mRNA_H-paniculata_contig10018.26.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig10018:807..917- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCGGAGAGTGCCCGGGATGTCTCGCGACGGAGTGCCGTATATGCAA
GTTCTGCAAGGACATGCCTAAGTACGGAGGTCCTGGCCGCGTCCGTCAGG
CAAGCGTTGTAAGGTGCGGAGAGTGCCCGGGATGTCTCGCGACGGAGTGC
CGTATATGCAAGTTCTGCAAGGACATGCCTAAGTACGGAGGTCCTGGCCG
CGTCCGTCAGGCAAGCGTTGTA
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