mRNA_H-paniculata_contig1001.21.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1001.21.1
Unique NamemRNA_H-paniculata_contig1001.21.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1001.21.1 vs. uniprot
Match: D8LTA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA9_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.410e-44
Identity = 92/175 (52.57%), Postives = 120/175 (68.57%), Query Frame = 3 
Query:   12 RGG*DQRHVKPVPSGLDEK*RAGVKTN*MGTYNSEVVGAVDAVPMGGVYLLSTSFTLVVEYLDHLTAVRSLPCCQAWWRTMSTLPPAAHVNTCMGKSVEWQDLVNQLEMIKSSNPHRSVSRLTLGYKIKIGSLESLVSASGNL-IIHLDLTYSKGAKNLDFKAMAKQLPNLKGLA 533
            R G + R ++   S LD + +A V      T+ SE  G VDAV MGG YL S SF +VVEYLDH TAVRS P  ++WWRT+S LPPA+H++T +GK + W +LV QL+ IK+SNP R+V+R+TLG + K+GS  +L    G + + HLDLT S GAK LDF A+AK LP L+GLA
Sbjct:   17 RNGGELRCMRRGLSLLDSRWKADVDRKRKATFASEDKGMVDAVLMGGFYLPSDSFAMVVEYLDHGTAVRSTPSSKSWWRTISGLPPASHIDTNIGKRLPWGELVTQLKTIKASNPLRAVARVTLGCRTKLGSFHNLGKVVGGVGLTHLDLTRSWGAKKLDFAALAKALPTLRGLA 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1001.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTA9_ECTSI1.410e-4452.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1001contigH-paniculata_contig1001:26312..29021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2143
Cds size1551
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1001.21.1prot_H-paniculata_contig1001.21.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1001 26809..28926 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928709.0191646-UTR-H-paniculata_contig1001:26311..268081622928709.0191646-UTR-H-paniculata_contig1001:26311..26808Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1001 26312..26808 -
1691480586.9587626-UTR-H-paniculata_contig1001:26311..268081691480586.9587626-UTR-H-paniculata_contig1001:26311..26808Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1001 26312..26808 -
1622928709.0869536-UTR-H-paniculata_contig1001:28926..290211622928709.0869536-UTR-H-paniculata_contig1001:28926..29021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1001 28927..29021 -
1691480586.9965572-UTR-H-paniculata_contig1001:28926..290211691480586.9965572-UTR-H-paniculata_contig1001:28926..29021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1001 28927..29021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928709.0386698-CDS-H-paniculata_contig1001:26808..279211622928709.0386698-CDS-H-paniculata_contig1001:26808..27921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1001 26809..27921 -
1691480586.9690197-CDS-H-paniculata_contig1001:26808..279211691480586.9690197-CDS-H-paniculata_contig1001:26808..27921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1001 26809..27921 -
1622928709.0525634-CDS-H-paniculata_contig1001:28180..284611622928709.0525634-CDS-H-paniculata_contig1001:28180..28461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1001 28181..28461 -
1691480586.9780138-CDS-H-paniculata_contig1001:28180..284611691480586.9780138-CDS-H-paniculata_contig1001:28180..28461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1001 28181..28461 -
1622928709.069477-CDS-H-paniculata_contig1001:28769..289261622928709.069477-CDS-H-paniculata_contig1001:28769..28926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1001 28770..28926 -
1691480586.9877067-CDS-H-paniculata_contig1001:28769..289261691480586.9877067-CDS-H-paniculata_contig1001:28769..28926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1001 28770..28926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1001.21.1

>prot_H-paniculata_contig1001.21.1 ID=prot_H-paniculata_contig1001.21.1|Name=mRNA_H-paniculata_contig1001.21.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=517bp
MGTYNSEVVGAVDAVPMGGVYLLSTSFTLVVEYLDHLTAVRSLPCCQAWW
RTMSTLPPAAHVNTCMGKSVEWQDLVNQLEMIKSSNPHRSVSRLTLGYKI
KIGSLESLVSASGNLIIHLDLTYSKGAKNLDFKAMAKQLPNLKGLAVEET
FYQNEFVYSWLHSLANLVREVSLESLRLKVHEYSCWPSADPRSKAKWQSH
DVSKINNSVLEDLANLGSAQAETFFSGPNNILGHMGFFALSDHHHNSPIH
NVPGARGAERKKDEGADSPRPPPSSLRKLWLSAPSQGPTITSGMAALGMG
MPKLEELVVDRLNITNEGWERFASRIAATTATAVEDYPASASANGDKQKM
ALTPTLRSIKMNVACPRFLPSAAARRLLEDVVSEGVTVYVNTRRPAFVAT
GGKASTPVTSSAGGPGSGRVSGQEAERGRAGAGPASGPCGTAAAPCVVLD
CEGRVVEVDVSNGGPRPWMVDMDGKVNARSMLQKSPSKQVGADAIPSKTR
VMFKPWLTSGLNAGDL*
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mRNA from alignment at H-paniculata_contig1001:26312..29021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1001.21.1 ID=mRNA_H-paniculata_contig1001.21.1|Name=mRNA_H-paniculata_contig1001.21.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2710bp|location=Sequence derived from alignment at H-paniculata_contig1001:26312..29021- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTGTATCGAGGCGGATAGGATCAGAGGCATGTGAAGCCAGTGCCG
TCGGGGCTGGATGAAAAGTGAAGGGCAGGTGTCAAGACCAACTAGATGGG
CACTTACAACTCGGAAGTCGTGGGGGCGGTGGACGCGGTGCCAATGGGGG
GTGTCTACTTACTTTCGACTTCGTTCACCTTGGTGGTGGAGTACCTGGAT
CATTTGACAGCTGTGCGTTCGCTTCCTTGCTGCCAAGCTTGGTGGAGAAC
CAGTTGAGCAGTGGGTGGTTTTGAGCGTTCTTTTTTCCTTTCAGCGATGG
TAAAAGGCTTTTTTGTCCGATTCCTTCGTCTATGTGTCAGTATATGGTTT
GCGACAGTATACGATGCATGGCCACAAGTTGCACTACACACACTGAATAG
GATGTTACACATCTGTGTTAAATCTCAAGCAATTCGCAACTTCCGAACAT
GGGGTCTCTCATACATGTTCGCTCTGCTTTTGACGATATTCTTCACCCCC
GTTGCGCACCGTCCTTCGCCCGGTCGCTTGAACAATGGATGGGAAATCTA
TCGACGGCAGTGTCCACGCTCCCTCCTGCCGCTCACGTGAACACGTGCAT
GGGTAAGAGTGTAGAGTGGCAAGATCTGGTCAATCAGCTCGAGATGATCA
AGTCTTCGAACCCCCATCGCTCGGTCAGCCGACTCACTCTGGGGTACAAA
ATCAAGATTGGTAGCCTCGAGAGCTTGGTCTCCGCGTCCGGCAACCTCAT
CATACACCTAGACCTCACGTATTCGAAGGGAGCCAAAAACTTGGATTTCA
AGGCTATGGCCAAGCAACTGCCCAACCTGAAGGGACTTGCGGTGAGCAAT
ATATATATATATATACTTCTTTTGTAGCGGTATTGCTAGTGCCACATGAC
TTCAGTCATGAAACACTCATCCATCAACCTATCTTCTCGCTGGCTTGAAA
TTACCGGCGTACCGACGCATTCTCTTCGAGGAGCTTTGCGGGACAAGCAG
TACGCTGAGTGTTTGTTATGGGATCAATTGTATGTTCTCCTTCACCAATC
GCTCCGTTTTTATTACCTCGCTGCAAAACTTCTGCCGCTTCTTACTTTAG
GTGGAGGAAACCTTTTACCAGAATGAGTTCGTATACAGCTGGTTGCACAG
CCTGGCAAACCTCGTTCGCGAGGTGTCTCTGGAATCTCTTCGCCTCAAAG
TTCATGAATACTCGTGCTGGCCAAGCGCTGATCCCCGCAGCAAGGCTAAG
TGGCAGAGCCACGACGTCTCCAAGATCAACAACAGCGTGCTCGAGGATCT
TGCCAACCTAGGCTCGGCACAAGCAGAGACTTTCTTCAGTGGTCCCAACA
ACATTCTCGGTCACATGGGGTTTTTTGCTCTTTCCGATCACCACCACAAT
AGTCCAATTCACAACGTACCGGGAGCGAGGGGCGCAGAGAGAAAGAAAGA
TGAGGGAGCCGACTCTCCACGCCCCCCGCCGTCCAGCCTGCGCAAGCTTT
GGCTCTCCGCGCCTTCGCAAGGCCCCACGATCACCTCGGGCATGGCGGCA
CTGGGTATGGGCATGCCCAAGCTGGAAGAACTCGTGGTAGACCGACTGAA
CATAACGAATGAAGGATGGGAAAGGTTCGCTTCGCGTATTGCAGCCACCA
CCGCCACGGCTGTAGAAGATTATCCTGCTTCTGCGTCCGCCAATGGTGAT
AAGCAAAAAATGGCTCTCACGCCCACCCTACGCAGTATTAAGATGAATGT
GGCTTGCCCCCGTTTTCTACCCTCCGCGGCCGCTCGCAGACTGCTCGAAG
ACGTGGTGAGCGAGGGCGTTACAGTGTATGTGAACACGCGTAGACCGGCG
TTTGTCGCCACGGGTGGGAAAGCGTCGACGCCGGTTACTTCGAGTGCGGG
GGGACCGGGGAGTGGTCGAGTGTCAGGGCAGGAAGCGGAGAGGGGACGGG
CGGGCGCGGGACCTGCCTCCGGGCCATGTGGAACTGCAGCCGCGCCATGT
GTTGTACTTGATTGCGAGGGGAGGGTGGTTGAGGTAGACGTGAGCAATGG
AGGTCCTAGGCCCTGGATGGTAGATATGGACGGTAAAGTGAACGCGCGCA
GCATGCTTCAGAAAAGCCCATCGAAACAGGTTGGAGCTGATGCCATTCCT
AGCAAAACTCGCGTGATGTTCAAGCCGTGGCTTACCTCCGGTCTCAACGC
CGGGGATCTCTGATTATTTTTTGGGTCGTCGACGATGTCATTCCATATGC
CGCCGTTTTTGTAAAGTTCAGATCATCGCAGATGGAAAAGGTCCAGTTTG
CTACGTTTGGCTGGAAAGTAGTCAATTGAGTCTTGCTCGTTTTGATTTGT
CTTGATATTCATCTTACGGGGGAAATGTGCTCTCTGTATCTTCATCTCCG
GAGGGCGTAGTATTAAAATCAAAGCATTACACAAATGAAGTTAACATATC
ATTTTTCACAATTGCAAGTTCGTTTACCTGAAAGTATTCGTGTAACCGAT
ACTACATATTTTGGGCTGACCTGAATTTTACGCTCACCTGGGCGTACTCG
GTGTGTTGTTTTGAAGATTGATTGGCTGCAGGCACACACATGGATATTTT
AGAAGGGGCCAACCGCCCATTGTTTGCCGCACTCGGGAATCAGGGCATCT
ACGGTAGGCCCCAACTGCCGATTTATCTTACTTGTATTTCACATGGGGGT
GGAGTTTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1001:26312..29021-

>mRNA_H-paniculata_contig1001.21.1 ID=mRNA_H-paniculata_contig1001.21.1|Name=mRNA_H-paniculata_contig1001.21.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3102bp|location=Sequence derived from alignment at H-paniculata_contig1001:26312..29021- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCACTTACAACTCGGAAGTCGTGGGGGCGGTGGACGCGGTGCCAAT
GGGGGGTGTCTACTTACTTTCGACTTCGTTCACCTTGGTGGTGGAGTACC
TGGATCATTTGACAGCTGTGCGTTCGCTTCCTTGCTGCCAAGCTTGGTGG
AGAACCAATGGGCACTTACAACTCGGAAGTCGTGGGGGCGGTGGACGCGG
TGCCAATGGGGGGTGTCTACTTACTTTCGACTTCGTTCACCTTGGTGGTG
GAGTACCTGGATCATTTGACAGCTGTGCGTTCGCTTCCTTGCTGCCAAGC
TTGGTGGAGAACCATGTCCACGCTCCCTCCTGCCGCTCACGTGAACACGT
GCATGGGTAAGAGTGTAGAGTGGCAAGATCTGGTCAATCAGCTCGAGATG
ATCAAGTCTTCGAACCCCCATCGCTCGGTCAGCCGACTCACTCTGGGGTA
CAAAATCAAGATTGGTAGCCTCGAGAGCTTGGTCTCCGCGTCCGGCAACC
TCATCATACACCTAGACCTCACGTATTCGAAGGGAGCCAAAAACTTGGAT
TTCAAGGCTATGGCCAAGCAACTGCCCAACCTGAAGGGACTTGCGTGTCC
ACGCTCCCTCCTGCCGCTCACGTGAACACGTGCATGGGTAAGAGTGTAGA
GTGGCAAGATCTGGTCAATCAGCTCGAGATGATCAAGTCTTCGAACCCCC
ATCGCTCGGTCAGCCGACTCACTCTGGGGTACAAAATCAAGATTGGTAGC
CTCGAGAGCTTGGTCTCCGCGTCCGGCAACCTCATCATACACCTAGACCT
CACGTATTCGAAGGGAGCCAAAAACTTGGATTTCAAGGCTATGGCCAAGC
AACTGCCCAACCTGAAGGGACTTGCGGTGGAGGAAACCTTTTACCAGAAT
GAGTTCGTATACAGCTGGTTGCACAGCCTGGCAAACCTCGTTCGCGAGGT
GTCTCTGGAATCTCTTCGCCTCAAAGTTCATGAATACTCGTGCTGGCCAA
GCGCTGATCCCCGCAGCAAGGCTAAGTGGCAGAGCCACGACGTCTCCAAG
ATCAACAACAGCGTGCTCGAGGATCTTGCCAACCTAGGCTCGGCACAAGC
AGAGACTTTCTTCAGTGGTCCCAACAACATTCTCGGTCACATGGGGTTTT
TTGCTCTTTCCGATCACCACCACAATAGTCCAATTCACAACGTACCGGGA
GCGAGGGGCGCAGAGAGAAAGAAAGATGAGGGAGCCGACTCTCCACGCCC
CCCGCCGTCCAGCCTGCGCAAGCTTTGGCTCTCCGCGCCTTCGCAAGGCC
CCACGATCACCTCGGGCATGGCGGCACTGGGTATGGGCATGCCCAAGCTG
GAAGAACTCGTGGTAGACCGACTGAACATAACGAATGAAGGATGGGAAAG
GTTCGCTTCGCGTATTGCAGCCACCACCGCCACGGCTGTAGAAGATTATC
CTGCTTCTGCGTCCGCCAATGGTGATAAGCAAAAAATGGCTCTCACGCCC
ACCCTACGCAGTATTAAGATGAATGTGGCTTGCCCCCGTTTTCTACCCTC
CGCGGCCGCTCGCAGACTGCTCGAAGACGTGGTGAGCGAGGGCGTTACAG
TGTATGTGAACACGCGTAGACCGGCGTTTGTCGCCACGGGTGGGAAAGCG
TCGACGCCGGTTACTTCGAGTGCGGGGGGACCGGGGAGTGGTCGAGTGTC
AGGGCAGGAAGCGGAGAGGGGACGGGCGGGCGCGGGACCTGCCTCCGGGC
CATGTGGAACTGCAGCCGCGCCATGTGTTGTACTTGATTGCGAGGGGAGG
GTGGTTGAGGTAGACGTGAGCAATGGAGGTCCTAGGCCCTGGATGGTAGA
TATGGACGGTAAAGTGAACGCGCGCAGCATGCTTCAGAAAAGCCCATCGA
AACAGGTTGGAGCTGATGCCATTCCTAGCAAAACTCGCGTGATGTTCAAG
CCGTGGCTTACCTCCGGTCTCAACGCCGGGGATCTCTGAGTGGAGGAAAC
CTTTTACCAGAATGAGTTCGTATACAGCTGGTTGCACAGCCTGGCAAACC
TCGTTCGCGAGGTGTCTCTGGAATCTCTTCGCCTCAAAGTTCATGAATAC
TCGTGCTGGCCAAGCGCTGATCCCCGCAGCAAGGCTAAGTGGCAGAGCCA
CGACGTCTCCAAGATCAACAACAGCGTGCTCGAGGATCTTGCCAACCTAG
GCTCGGCACAAGCAGAGACTTTCTTCAGTGGTCCCAACAACATTCTCGGT
CACATGGGGTTTTTTGCTCTTTCCGATCACCACCACAATAGTCCAATTCA
CAACGTACCGGGAGCGAGGGGCGCAGAGAGAAAGAAAGATGAGGGAGCCG
ACTCTCCACGCCCCCCGCCGTCCAGCCTGCGCAAGCTTTGGCTCTCCGCG
CCTTCGCAAGGCCCCACGATCACCTCGGGCATGGCGGCACTGGGTATGGG
CATGCCCAAGCTGGAAGAACTCGTGGTAGACCGACTGAACATAACGAATG
AAGGATGGGAAAGGTTCGCTTCGCGTATTGCAGCCACCACCGCCACGGCT
GTAGAAGATTATCCTGCTTCTGCGTCCGCCAATGGTGATAAGCAAAAAAT
GGCTCTCACGCCCACCCTACGCAGTATTAAGATGAATGTGGCTTGCCCCC
GTTTTCTACCCTCCGCGGCCGCTCGCAGACTGCTCGAAGACGTGGTGAGC
GAGGGCGTTACAGTGTATGTGAACACGCGTAGACCGGCGTTTGTCGCCAC
GGGTGGGAAAGCGTCGACGCCGGTTACTTCGAGTGCGGGGGGACCGGGGA
GTGGTCGAGTGTCAGGGCAGGAAGCGGAGAGGGGACGGGCGGGCGCGGGA
CCTGCCTCCGGGCCATGTGGAACTGCAGCCGCGCCATGTGTTGTACTTGA
TTGCGAGGGGAGGGTGGTTGAGGTAGACGTGAGCAATGGAGGTCCTAGGC
CCTGGATGGTAGATATGGACGGTAAAGTGAACGCGCGCAGCATGCTTCAG
AAAAGCCCATCGAAACAGGTTGGAGCTGATGCCATTCCTAGCAAAACTCG
CGTGATGTTCAAGCCGTGGCTTACCTCCGGTCTCAACGCCGGGGATCTCT
GA
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