mRNA_H-paniculata_contig10008.18.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig10008.18.1
Unique Name	mRNA_H-paniculata_contig10008.18.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig10008.18.1 vs. uniprot
Match: D7G1H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H8_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.060e-47
Identity = 75/109 (68.81%), Postives = 91/109 (83.49%), Query Frame = 1

Query:   76 MIKGSLWKSTEAYAGGMERRYCVLVGTLMLDFDTVDDFDNGVPPKAEGQVIGASVWRGKGRLRGAHEDGFVYVTRSGHTNYCSASSRKDHDEWMSWMKTALDMALGTEG 402
            M+KG+LWKST  Y G ME+R+CVLVGTL+LDF++ DDF +G PPKAEG+VIG S W+GK   RGAH +GFVYVTR GHTNYC+  S++ HDEWM WM+TALDMALGT+G
Sbjct:    1 MMKGTLWKSTSNYVGSMEKRFCVLVGTLVLDFESEDDFSSGAPPKAEGEVIGVSAWKGKSLQRGAHPEGFVYVTRLGHTNYCAVPSKRHHDEWMLWMRTALDMALGTDG 109

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BLAST of mRNA_H-paniculata_contig10008.18.1 vs. uniprot
Match: A0A6H5KWD1_9PHAE (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD1_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 7.860e-41
Identity = 75/140 (53.57%), Postives = 92/140 (65.71%), Query Frame = 1

Query:   76 MIKGSLWKSTEAYAGGMERRYCVLVGTLMLDFDTVDDFDNGVPPKAEGQVIGASVWRGK-----------------------GRL--------RGAHEDGFVYVTRSGHTNYCSASSRKDHDEWMSWMKTALDMALGTEG 402
            M+KG+LWKST    G ME+++CVLVGTL+LDF++ DDF +G PPKAEG+VIG S W+GK                       GR         RGAH +GFVYVTR GHTNYC+  S++ HDEWM WM+TALDMALGT+G
Sbjct:    1 MMKGTLWKSTSNLMGSMEKKFCVLVGTLVLDFESEDDFSSGAPPKAEGEVIGVSAWKGKHAARDEQPSLGKAGSRNPAAAVAGRANQTGKSLQRGAHPEGFVYVTRLGHTNYCAVPSKRHHDEWMLWMRTALDMALGTDG 140

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BLAST of mRNA_H-paniculata_contig10008.18.1 vs. uniprot
Match: A0A1V9ZA50_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZA50_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-6
Identity = 32/100 (32.00%), Postives = 54/100 (54.00%), Query Frame = 1

Query:   79 IKGSLWKSTEAYAGGMERRYCVLVGTLMLDFDTVDDFDNGVPPKAEGQVIGASVWRGKGRLRGAHEDGFVYVTRSGHTNYCSASSRKDHDEWMSWMKTAL 378
            ++G LWK   A    M RRYCVL G+++  ++T  + + G+ PK    +     W GK RL+  +E  F + T SG    CSA +    ++W++ ++ +L
Sbjct:    1 MQGYLWKRGHAIPT-MNRRYCVLEGSMLACYNTEREHELGLTPKDVYAIREVLPWDGKTRLKN-YEHSFAFSTLSGKIYQCSADTMAAQEQWIAAVQESL 98

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig10008.18.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig10008.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G1H8_ECTSI	1.060e-47	68.81	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KWD1_9PHAE	7.860e-41	53.57	PI3K/PI4K catalytic domain-containing protein n=1 ...	[more]
A0A1V9ZA50_9STRA	1.150e-6	32.00	Uncharacterized protein (Fragment) n=1 Tax=Thraust...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig10008	contig	H-paniculata_contig10008:2439..5653 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	174.9
Seed ortholog evalue	2.8e-41
Seed eggNOG ortholog	2880.D7G1H8
Preferred name	PI4KB
KEGG rclass	RC00002,RC00078
KEGG ko	ko:K19801
KEGG Reaction	R03361
KEGG Pathway	ko00562,ko01100,ko04070,map00562,map01100,map04070
KEGG Module	M00130
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0003674,GO:0003824,GO:0004430,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006464,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006996,GO:0007010,GO:0007017,GO:0007030,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007423,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008610,GO:0008654,GO:0009058,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010259,GO:0010604,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016567,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0019637,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0023052,GO:0030029,GO:0030036,GO:0030258,GO:0030725,GO:0030726,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0033206,GO:0035295,GO:0035556,GO:0036211,GO:0036213,GO:0042176,GO:0042710,GO:0043062,GO:0043063,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043583,GO:0044010,GO:0044011,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045017,GO:0045732,GO:0046474,GO:0046486,GO:0046488,GO:0046834,GO:0046854,GO:0048015,GO:0048017,GO:0048137,GO:0048232,GO:0048285,GO:0048471,GO:0048513,GO:0048518,GO:0048609,GO:0048731,GO:0048839,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051703,GO:0051704,GO:0051716,GO:0052742,GO:0060255,GO:0060872,GO:0061640,GO:0061982,GO:0061983,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0071889,GO:0071944,GO:0080090,GO:0090175,GO:0090407,GO:0090605,GO:0090609,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0140013,GO:1901564,GO:1901576,GO:1903046,GO:1905330,GO:2000026,GO:2000027
EggNOG free text desc.	phosphatidylinositol kinase activity
EggNOG OGs	COG5032@1,KOG0903@2759,KOG1818@1,KOG1818@2759
EC	2.7.1.67
COG Functional cat.	BDLTU
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Exons	2
Model size	433
Cds size	429
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928708.6841905-CDS-H-paniculata_contig10008:2438..2685	1622928708.6841905-CDS-H-paniculata_contig10008:2438..2685	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10008 2439..2685 +
1691480586.7101371-CDS-H-paniculata_contig10008:2438..2685	1691480586.7101371-CDS-H-paniculata_contig10008:2438..2685	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10008 2439..2685 +
1622928708.7007704-CDS-H-paniculata_contig10008:5469..5651	1622928708.7007704-CDS-H-paniculata_contig10008:5469..5651	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10008 5470..5651 +
1691480586.7224026-CDS-H-paniculata_contig10008:5469..5651	1691480586.7224026-CDS-H-paniculata_contig10008:5469..5651	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10008 5470..5651 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig10008.18.1	prot_H-paniculata_contig10008.18.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig10008 2439..5651 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig10008:2439..5653+
coding sequence from alignment at H-paniculata_contig10008:2439..5653+

protein sequence of mRNA_H-paniculata_contig10008.18.1

>prot_H-paniculata_contig10008.18.1 ID=prot_H-paniculata_contig10008.18.1|Name=mRNA_H-paniculata_contig10008.18.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
AAWYRGEAGALYRSEGFILAKTISTMIKGSLWKSTEAYAGGMERRYCVLV
GTLMLDFDTVDDFDNGVPPKAEGQVIGASVWRGKGRLRGAHEDGFVYVTR
SGHTNYCSASSRKDHDEWMSWMKTALDMALGTEGAECVWGGDT

mRNA from alignment at H-paniculata_contig10008:2439..5653+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig10008.18.1 ID=mRNA_H-paniculata_contig10008.18.1|Name=mRNA_H-paniculata_contig10008.18.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3215bp|location=Sequence derived from alignment at H-paniculata_contig10008:2439..5653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCCTGGTACCGTGGGGAGGCTGGCGCTCTGTATCGCTCGGAAGGCTT
TATTTTGGCCAAAACAATATCTACCATGATAAAGGGGTCGTTATGGAAGA
GCACAGAAGCTTACGCCGGCGGCATGGAGCGGCGGTACTGCGTGCTCGTG
GGCACTCTTATGCTCGACTTTGATACAGTTGACGACTTCGATAACGGCGT
GCCGCCAAAGGCTGAGGGGCAGGTCATTGGGGCTTCTGTGTGGCGAGGTA
ATGTAGGTGCCATGCGTTTGAGTCAAGCCCATACTTAAATGTGGTGTTTC
TCTACTCTCTGTTTCTCCGTTTCTCTTCTCTGTGGTGCTTGGTCGTGTGT
GTTACATACAACATGCTGCAGTTTGTCCTGTAGCTTGTTTTCCTGGTTTC
CTTAGCTAGCTGGTCGGCTGCGGCCCATGAGGAAGCTTTGGGCACCCCGC
ACCAGAGCGCAGCAGTCTATCCGTAGACGAGCAGAGGATAGGCAGGGTGA
AGAATCAATTGGTGTGCGGATGGTACCGTGTCTACCCTAGGTAATATCGG
TGACCGTGTCTACCTATTGTTGTCGCATGTCACTCCGGAATTAAGCATGT
TCGCACTTGAAGGACATGCACTGTTTACTAGTTACTTCGTACCTCTTGCT
CTATACATGGAGTAATCTACTGTATTGTCTGTCACGTATATCTCTAGAAT
AGATAGTTGTCGTATAATAGTACTGTAGCATATGCGCTATCTATTGAGTT
CGTTTCTCCAAATGCATCTGCACACGATATTACCTCCACATTTCAGTTGA
GGAGTTATTTCCCAACCCATGCGTCGAGATGCAAAACACTGCATTCTTGA
GAAAGAAAAGGACCACGGTACACTGCAAAGTTAGATTGCACCTCGGCCCG
AGCTAGGCATGAACTTTTGCCGCGTTTTTTGGGCTTTTATTTAATCTCTC
TTTCTCTCTCTCTCTCTCGGTATATATATATATAGTCAGGGTTTGAGGAA
ATGGAGTGTATTTATCGACAACTGTCATCTTTCAAACGACCCAGTTATCG
CTGTTATGAACGTCGTCTTTATTCAGCACCACCTAGCAGCCATCCTTTCG
GGGCGCAAATGTCGAATTTTCATATGTTACAGACGACGACAAACGCAGGC
AGCAGACACCGCTTTGGAAGCGCGGGATTGTTGATTCAGTGCTCCTTTGA
TAGTCCACAAGGAACTTGAGGTCTGTCACACTGATGAGTAAAATATGCTG
GGCGTGCTGCGCTGGGTATATGGTATCTATCAGGAAAGTGTGCAGACCGC
ACCGTTAAGGGTAGGAGGAGACCCAAGTTGGCCATACTCCACGCCCTTAC
TGCAAGTGTTTTTTTTAACGAAGTTGTGTCTCCTATGTTAAAAACCAGCA
TAAATTTGAAATTTGAAATGTTCCACTGACTGCTACGAATGGTAATTTAT
ATCTACTCTTCGAAAATCGAGTGTGCAAACATGCTTTCACCAGCTGCGGT
ATACCGTGTACACCTTCAGTCAAGTCTGTACAGATCAGTGGCCCATTTCT
TGTCAGCAAAGAACAAACCACAATGGAATCTCTGTCTACCAGCGAGGGAG
AGACTAGTATTCGAGCAGAACACTTGGCGTAGCGAAACGTCATATATAAA
GCTCTATAAAAGCACGTATAATATAAGAACGCCGCAGGATCGTATGTCTG
GCTCGTGCAGCGTTGGAAGTTATAACTAACTTGGCAGTGTTGTTGTCAGC
CTCAAGGTCATTTTACAAATTTGATACACGTCACAAGCGCTGTAGCTGCG
TTGTTGCAGAGCGTAGGGCTGTAGTTTGAAGCTTTTCTTGTACCTCTATT
CGTGCGACAAGACTTGTACGTGTCGGCCATTTGTCGGTATGTTTATGGTA
CGGCACAACGTAATAACCATTACTACACACCTCGGATGAAGGTCAGTGAC
GGTCAACAAATATTGTCGCGAATTTTAGAGCTATGACGGCTCGATATTTC
TCGGCACTTTTGGAAAAAAAAGTCTTTATCCAAGGTGTGCATTATTGCAG
GAAATCTGTGCGTGGACTACAATGTTAAGACACTAGAGTCCGCTGCGGTT
TCAGTCGTTTTGAAACCATAGTACGGTGAGTACGAGACATCCATCGCTAC
AAGTACAACACATAAAATAAGTCACTTTGTGTTGTTCAGGTATTGATATA
TACTCTGGAGTCGAAAGTTGTTGGGAGCTCATTACATGTATCAATCTGTT
ACCGGGCCCGGGGTGGTCATGTGCCTCTTGGTCCTATAATTACCTATGTC
TGCTCTGTCCATTACATACGCGAATGATGCTCTGCTATTCTGTGCCGCCT
CACGTTGGTGAATTTCGTAGAATCAGTTACTCAGCAGTTTTGCAAAGTTT
TCTCCGCGTAATTCGAATTTTAATTGACTGCTACTGGCATGTCTTCTGTA
CTGTATTGTAGTTGTACATGTTTCAAATCGTATACCCCCAAGTTATCGTC
GGCGCTGCCCTGTTTTACTTTTTATTTTTAGTTGGGCAAAAGGCATACAT
GCTGTATGTTGTCGCCTGTTCTGGTAGTTGATGTGCAGAGTTTCTGCTTC
TGCTTGATGAAGTTTGCCACTTTGTTCTTGTCTAAACTGCTGCATTTTCT
CGCTATCAGGGATCCTGTAGATTTCGTCTCCAACCCTCCACTCGTTTGTC
CTAAATATGCTGATGAATACATGTAGCACATAATTATTGTAGATTAAACA
ACCTCAGCTTGTAACATATATTCCGACACAAGAAACTGTCTATTGTTGTT
CATGGCAATGATACTTATATATAATCCCTGTTGTGTACAGCCTTTAGTTC
ATGTTGCTGTCCTTGTTTGAAACTACGGAATGACTCCCGGCATCCAGCTG
TCGACTAGGCAAATCGCCGATGGTATCGGTAGAGTGTTATGCTCTAAAAT
ACTTGGATCATGTGGACGACACTATTTCCCCCCCTCCTGTATAGACTTGA
ACCCCCTCCCGCCTCCTCGTCGGTAATTCAGGCAAGGGACGACTGCGCGG
CGCCCACGAAGACGGCTTCGTGTACGTGACGAGATCAGGTCATACTAACT
ACTGCTCCGCCTCGTCTAGGAAAGACCACGATGAGTGGATGAGCTGGATG
AAAACGGCCCTTGACATGGCCCTAGGGACGGAGGGGGCGGAGTGTGTGTG
GGGAGGTGACACAAG

Coding sequence (CDS) from alignment at H-paniculata_contig10008:2439..5653+

>mRNA_H-paniculata_contig10008.18.1 ID=mRNA_H-paniculata_contig10008.18.1|Name=mRNA_H-paniculata_contig10008.18.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig10008:2439..5653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCCTGGTACCGTGGGGAGGCTGGCGCTCTGTATCGCTCGGAAGGCTT
TATTTTGGCCAAAACAATATCTACCATGATAAAGGGGTCGTTATGGAAGA
GCACAGAAGCTTACGCCGGCGGCATGGAGCGGCGGTACTGCGTGCTCGTG
GGCACTCTTATGCTCGACTTTGATACAGTTGACGACTTCGATAACGGCGT
GCCGCCAAAGGCTGAGGGGCAGGTCATTGGGGCTTCTGTGTGGCGAGGCG
GCCTGGTACCGTGGGGAGGCTGGCGCTCTGTATCGCTCGGAAGGCTTTAT
TTTGGCCAAAACAATATCTACCATGATAAAGGGGTCGTTATGGAAGAGCA
CAGAAGCTTACGCCGGCGGCATGGAGCGGCGGTACTGCGTGCTCGTGGGC
ACTCTTATGCTCGACTTTGATACAGTTGACGACTTCGATAACGGCGTGCC
GCCAAAGGCTGAGGGGCAGGTCATTGGGGCTTCTGTGTGGCGAGGCAAGG
GACGACTGCGCGGCGCCCACGAAGACGGCTTCGTGTACGTGACGAGATCA
GGTCATACTAACTACTGCTCCGCCTCGTCTAGGAAAGACCACGATGAGTG
GATGAGCTGGATGAAAACGGCCCTTGACATGGCCCTAGGGACGGAGGGGG
CGGAGTGTGTGTGGGGAGGTGACACAGCAAGGGACGACTGCGCGGCGCCC
ACGAAGACGGCTTCGTGTACGTGACGAGATCAGGTCATACTAACTACTGC
TCCGCCTCGTCTAGGAAAGACCACGATGAGTGGATGAGCTGGATGAAAAC
GGCCCTTGACATGGCCCTAGGGACGGAGGGGGCGGAGTGTGTGTGGGGAG
GTGACACA