mRNA_H-paniculata_contig1.5.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1.5.1
Unique NamemRNA_H-paniculata_contig1.5.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1.5.1 vs. uniprot
Match: D7FNC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNC9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.180e-8
Identity = 24/37 (64.86%), Postives = 35/37 (94.59%), Query Frame = 1 
Query: 2143 QILAVARPVVKWGLMPAVLWMGMRTEPSPGLIDVLYP 2253
            ++LAVA+P+++WG+MPAVL MGMR+EP+P L++VLYP
Sbjct:   20 KVLAVAKPIMRWGIMPAVLLMGMRSEPNPTLLEVLYP 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNC9_ECTSI2.180e-864.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1contigH-paniculata_contig1:58502..64472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial import receptor subunit TOM7
Ec32 orthologEc-22_001240.1
Exons2
Model size3202
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1.5.1prot_H-paniculata_contig1.5.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1 62214..62750 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928704.8233988-UTR-H-paniculata_contig1:58501..594211622928704.8233988-UTR-H-paniculata_contig1:58501..59421Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1 58502..59421 -
1691480583.565884-UTR-H-paniculata_contig1:58501..594211691480583.565884-UTR-H-paniculata_contig1:58501..59421Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1 58502..59421 -
1622928704.8350902-UTR-H-paniculata_contig1:62190..622131622928704.8350902-UTR-H-paniculata_contig1:62190..62213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1 62191..62213 -
1691480583.58133-UTR-H-paniculata_contig1:62190..622131691480583.58133-UTR-H-paniculata_contig1:62190..62213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1 62191..62213 -
1622928704.871598-UTR-H-paniculata_contig1:62750..644721622928704.871598-UTR-H-paniculata_contig1:62750..64472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1 62751..64472 -
1691480583.6225214-UTR-H-paniculata_contig1:62750..644721691480583.6225214-UTR-H-paniculata_contig1:62750..64472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1 62751..64472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928704.8540413-CDS-H-paniculata_contig1:62213..627501622928704.8540413-CDS-H-paniculata_contig1:62213..62750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1 62214..62750 -
1691480583.5950632-CDS-H-paniculata_contig1:62213..627501691480583.5950632-CDS-H-paniculata_contig1:62213..62750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1 62214..62750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1.5.1

>prot_H-paniculata_contig1.5.1 ID=prot_H-paniculata_contig1.5.1|Name=mRNA_H-paniculata_contig1.5.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MKNADPQRSRRDCRTHSHLFPGSTRRQNGDVTVLATKILCRNKTKQSRDS
YFFRKGKPSICSTLAIMNNELHSAASNVRESPSVHMTYTLPFFYCFCITT
YPVDFGREVQPVDPTTDRSIVPYRGLARLFVSYRTLNCFEQILAVARPVV
KWGLMPAVLWMGMRTEPSPGLIDVLYPF*
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mRNA from alignment at H-paniculata_contig1:58502..64472-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1.5.1 ID=mRNA_H-paniculata_contig1.5.1|Name=mRNA_H-paniculata_contig1.5.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5971bp|location=Sequence derived from alignment at H-paniculata_contig1:58502..64472- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGAAACGATTGCCACAAGGCGCCGGCGACGGAAGAAAAGCTCCCCGA
TCCTTCCCAAGGTGACCAACCTCCCCTTGAATTTTTTTCTATTTATCTAT
TTGTTCTCACAATAAAGCAAAACCGAAGTCTTTGGACTGGTGTGGTGCAT
CTTTATCTCTTCTTAACTTCGTGGCTACTGCGGGAACGCAGCTACTTGCA
GCGGTAATACCAAGGAAGCTCTGATGATTTCAACGTTTGTGTACCAGCTT
CGTTTCCACTTCGGGCTCATTGCTGCGATGTGGAAACGTTCAGGCGGAGG
AAGGCAAAAACAGTCTCTGGAGATGCCCTATGGTACTTGGTAAAAAGAGC
TGAGCCTATCCGTAGTCGGCTCGGCTCTATCGAGCATCCCTCCTAACTGG
ACTGTCTGGTTCCGTGCACTAAGACTTTCTTTCGTATTTTCTTTTGTTGG
AGACATTGCGATTGGAGAGAACGCAAGCGTTGGCCACTCGGTACAAATAT
TGAACTGTACCATTGCTCAATCAATGCTGTAGAAGTGGGCTCTTGGAGAA
GGAATAGATATTTCTCGATGCCTGTTGATAAAAGTATTGACTAGAAAAGG
TTCGCCTCCCTATTTTTGGACAGTTTTGGGTGCGGTGGCCGATCATGACT
TCCGCCGGGATTGCAAGGCGTTGAAATGTCAAGTGGGTGCGCACTTCCAT
TGTCGCTCAAGATCAACTCTTACTCCCCACGGCCGTTGAGGTGTCGATTT
CTTCCTACAACTAGTGAGATTGGATATGTTGCGTCGATTCCAAAGTCCAT
CCTTGGGTATGCTGATTCTTTAGTGTCATTAACATTCACGGTTTTTATTC
ACCAAGACCAGGTCAGGTAGAACGCGCTCGCCTGACTGGATTCTGAACTG
TTTGCGAGATTTCGAAGGCGGCAAACGTACCCATGCTAAGTCTTGCCCTG
GTTCCATGGGGACGTCCTACTTTGACTTTTGGGGTGGTGCTGCAGGTCGT
GTTGTATCGATTATCGATTGAGTCAGTGTGCACAAAACCAAGAGCCAAGA
ATACAATTGAACTACAAGAAGTTTTGCTAGGGTGTTCTCGTTTTTTCTTT
CTTCAATTTCGCCTATAAAACGGGCAAACTGTATGCTTGGGAATAATGCC
AAAGGGTAGTCGGTACTCGTATTTTCGGGAATATCACGATGACCTCTTAG
ATTTTGAAATAGAAAGCCGATATTGTTCCCATGTGAGGTATCTTCATCGT
GATACTTTTATCATGCTGCTCTCTCCAATGGTATTCGTTTTATACGCGGT
TTTCAAGAGTAAAAAAAAATAACCCGAAAACACCCCTGAAAAAATCTTGA
CGGTCTGAAGATGACTCTGAAGCTGTAGTGGTGAATACAGTTGGCTAAAG
TTTCGGTAAAAGGCGCTGATCTGCTCTTTTTACCGCTCATCGAGGTATCC
AGATTTATACGAAACGTAATGACCTTCCACCTAGGCCAGATAAATTTGCT
CATCCTTCTTGCTTTATTCTGAGAAATTCTTGTTCGATCATTTATTCAAC
CTCTTTGGTGCAGGTAGAGATGAATAGGGATTAGATTCCGATGGTCGAAC
AACAAAATCAGCTAGAATATAGATAAAAAAATGTTTGTGATGAGCCACAA
CCCATTCCTCAGCTGTAATACTTTGGTCATATTCTAGCACCAAACCGCCG
AAAGAACCTTTCCCGCCCTCTTATGAAAAACGCCGACCCCCAACGTTCGC
GGCGGGACTGTCGGACGCATTCTCACTTGTTCCCGGGCAGCACCAGGCGC
CAAAACGGTGATGTTACGGTGCTCGCCACTAAAATATTGTGCCGAAATAA
AACAAAACAAAGTCGCGATTCGTATTTTTTCAGGAAAGGAAAACCATCGA
TATGTTCGACCCTTGCAATAATGAATAATGAACTGCATTCCGCTGCTAGC
AATGTCAGGGAGTCACCATCCGTGCACATGACTTATACATTGCCTTTTTT
TTACTGTTTCTGTATCACAACCTACCCGGTTGACTTCGGTCGTGAAGTAC
AGCCAGTAGACCCCACAACCGATCGTAGTATTGTTCCTTACCGTGGATTA
GCGCGCCTTTTCGTGTCGTATCGAACTTTGAACTGCTTCGAGCAGATCCT
GGCGGTTGCTAGACCTGTGGTGAAGTGGGGGCTGATGCCGGCCGTGCTCT
GGATGGGAATGCGCACGGAGCCGTCGCCGGGACTAATTGATGTATTGTAC
CCCTTCTGAAGTCCGAGGCTCGTGAACACCAGGTGAGCGCACCTTGTCTT
CTCCTAAGCTCGCCACCTTCGTGCCTCTGTTTAAACGGCATTTGACCGAT
GGTAGCACTGCGAACCACCTATGGTGGCAGTACTTTTTACATCGAAGATG
GAACATCATGCATATGTACTGGCTCTAGAGAGGAAAGCGTAGCTGGGCAC
TTACAATTAAGCGTGGTGGGGGATTTTCGACGTAATTCCCGTTTATTCGG
GAAAGTGATACTCGCGGAATTTTAATTGCCGTAAAAAATTGAGTGGAAAT
GCCAAAATTCTCACACCCCACCTGCCTTTTCACTAGCAATGTATGCAAAT
CGCGCTTAATTTATGGGAATGCCGCGTTGACCACAACTGTAGCGCGTGTT
TTCCCTCTGTGTGAAACTACCTCTGATCCCCACTAGTGCCTCCTTTTCCC
CATGATGGAATAAGCGCATGCGCCATATCATCTACGCACCTCGTAGGCGC
AAGAAGATGAACGCATCATTTGCCATGGAGTTCAGGAACCCTTTTAAGGC
ACAGTGTACCAAAACATGAAGACTGCACGGATTTTGAAACGTTCGTGTGC
CTTCTGGTGAATTCGCCCATTTTGAGGTCGCACCGGCCTGACAATACATG
AGTAAGGGACATAGTGCCTGAACGTGTACCATGCACAGTAGCCCACCTGA
GCAACATGAGTACATATCAAAGATGTGAAGGTGACATATACCGTAAGCCC
CAAGAAAATCATGCCCATGTCATTTGTTGCATTGCTTGTTTCACTATTGT
ACTTGAGTCCAATTTGTCCAGCGTTGACTTGCATGACAAAGCAAGATCTC
AGTAGTTGTAGGGTAGGGTAAAACCCTAACCGTAATCCCTCTACATCGTC
ATTTTACTATTATATTAATCTACAACAAGAAAACCGGATTCAAAGGCATC
GACACAGCTGAGACCTCAGGCAAAAAACAATAGATGTATATCACATAATT
GAGTAGGATACAGTAATTGTATGAGGAAAGAGTCGAGCAATAACAGGTAC
ACAGAATACACAACGCAAAGTTTAGACTAAGGTCATCTCTTATGAGGTCG
AATTTTTCCAGTCAAATTTCTCTACTTGCCGATTTTTCGAAGGGTGCAGA
AATCTGATCTTCAATATCGATTCGCGTGTTACGGGGTCGGACTTCCCGAA
AGTTGTTTTTTATGCAGATTTGCAAGCGTAGTAGTACAAGCGGCATAATT
CAAGATTCAGAAACCTTCCAACGTTGGGTCCTCGAGTACACCATCCAAGA
CCTCACCCTCGTACACGCCACCCTCCAGCACATACTCGCATAACCGTTTA
AAGAGCACATGATCATGAGTGTACCGTCAAATGCGATGCATTTTACGACG
AACTCATGCGTGGAATGGGTGTGGAGTGAGATGAAGGCTCAGGGGATCAA
ATTGGCTGTCAGCAAGGCACAGTGGATGATACTGCAAGATGTACCACTGT
GGTACGCTTGTACTGGTGTGAAGCATAACGGTGGGATCATGCCTAAGGCC
AACAGGAACAAGGCCGCGGTTGAATTGCACAATAAGATCGCGATCCACAG
CATTCTCCGCTGGGTGGAGGAAACCCCCGGGCTAGCAGTCCTACAAGTTC
TATATGACGGGGGTCATACACCTTGGCTTGTCTGTATCCTCGTGATTGCG
CATTGCTAAAGGCTGTGACATTCAAATGTTGCATGATAAACAACATCAAC
GCCCTCATATGGTGGTACTCCGAGAAATTCGATTCGCGAGGGGAACTCTG
ATTTCTGTCCGAAATTGGGGAATGGGACCGGCTGTACCTCCCATCTCGAA
TTTCTCAACTCATCTTTCCTGGAAATCCAACCGCTCAACATGGGAAATCG
AATTTCTTGGAGTCGAAAAAATTGAAAATCTGTCTTCGACTGGAAAAATC
TGACCCAATAAGAGATGGCCTGAGCGCAGCATCTCATTTTGCCCACGCAT
CCGTCTACTAATAATGCCCACGTTGTTGGAGACCAGGCTGGCTGCATTAC
CCCAAATATCAATGTGTGATTTCGACAGTCCCTCCTCAAAAAAGAGGGGG
GCGGTGCTTTTTTGGTACCGGGGGGGCGAATATCGATGGACAGTATCGCT
TTGGCCGGGCTGAGATTTGATCCGTATATCAACAAGGAGTATGACGGAAG
CGACATGTTTTTGCCACCTATAAAAGTTCAGAATATTAGATTTCGATGCA
AGGCGTAGAAGGGTATCTACTTTTTTACATTTTTCACATAGGCCAAAGGT
TACCACAGCAACCAAAGCGCCGTGTGCTTTATTTAGTAGATACATTGGTT
CCATCGAGCGGTGGCAGCCAGCTCGACAGCACAAACAGGATGATAACCGT
TACGTGTGTGACATTCTAATTGATTAAAGGTATCCACAGGCACAGCAGCC
GGCGGTTTACCACAGCCGCCCCACTTTGAGCATGGCACATCACTGATATC
AATCGTAATTGGTGATTAGGCATTGAGGTACCCGAAACAAAGACGGTTCT
CTCCATGTCAAGCTTACTTTTCCCCTGGTGTATGAGGCGTCAAGGCCGGT
CCGGTCCGGCTTGCCGGCCTGCCTCAAGTTGTCTACAAGACTTTTATCGG
CGTCGAAATGGCTACGGACGTTGACGTGAGCGGCTTTAAACGGGTCTGTG
AACTGTATCGTAGTATACAAACAACGCGATGCTTCGATCGAGGGTTAACC
ATTGGTCAACCATACTATTCCCCTCATGCCGCTTCCGTACATTGTTGACA
GGTTCAGAGATATCGCTTCTTGCTCATACCCCACCAGCGGTGCCGGAGGA
GCCACAGTCTCCGCTCAAAACGATAATGTGCAGGAATTGGGCTGAAAGCT
GGAGCAGAAATAGTTTGGACTGAAAATGGCTCGTGCCTCTCACCTGTCCA
GTAGTATATCATGTCACCCCATGCATTGGTCATGATCATTTGGGAGTCGG
CGAGGACTCTCGTAGTCTTTCATTTTTGGCAATTGTCGTGGTTGTGCTCT
GCCTCTTTTATTGTGGTCTGCGAGGGATGTACAAACGAAGCGATTGCACC
CGTGGCTTCGGTGTGATTCAGGTTCGGCAATACCCACGATTGCTGTACGC
AATAGTTTCAAGTTGTCAGGAATTACTATTAACAGTTCATTATGCTGCCT
CAGCTCACTTCTTTGCCAGAAAGTCTGTGGGCGGCCGAGGCTGTCTGTGT
TATACATAACCTCACCCCTTCGCTGCTTGTGGCAACACAGCATTCGAGGA
AAGGTGGTGGCGGCCAAGCGAGTTATTTTTGCTCGCGAAAAAGAACTTCA
TTCAATTTTCGTATTTTCCCCATACGACGTCGTAGTTCACATGAACGCAT
TGATATATCCTTCAAAAGTTCTTCAGCTGACGAGGTGATTGAAGAAGCGA
ATGATGGAGAAGTAATGAACAGTTTAATCATTAGAATACAAAGAACGACC
GTTTCAACCAAGTTTCAACTGCAAATATACGTGGGAAGTCCTAGCATCGA
GTGAACGATAACTCTACTGGAGTACTCGCGAAACTGTTGGGGTAAAGCGA
AACAATCGCTATATTGATGTGCGAAACCATCATGATTGATAGTAACATTC
AGTTTCATGTGGCCGTAACCCCCCTAGAAAAAGACTGGCGCTTTAGGTGC
TGGAGAGGCAGTGCCCCATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1:58502..64472-

>mRNA_H-paniculata_contig1.5.1 ID=mRNA_H-paniculata_contig1.5.1|Name=mRNA_H-paniculata_contig1.5.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig1:58502..64472- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAACGCCGACCCCCAACGTTCGCGGCGGGACTGTCGGACGCATTC
TCACTTGTTCCCGGGCAGCACCAGGCGCCAAAACGGTGATGTTACGGTGC
TCGCCACTAAAATATTGTGCCGAAATAAAACAAAACAAAGTCGCGATTCG
TATTTTTTCAGGAAAGGAAAACCATCGATATGTTCGACCCTTGCAATAAT
GAATAATGAACTGCATTCCGCTGCTAGCAATGTCAGGGAGTCACCATCCG
TGCACATGACTTATACATTGCCTTTTTTTTACTGTTTCTGTATCACAACC
TACCCGGTTGACTTCGGTCGTGAAGTACAGCCAGTAGACCCCACAACCGA
TCGTAGTATTGTTCCTTACCGTGGATTAGCGCGCCTTTTCGTGTCGTATC
GAACTTTGAACTGCTTCGAGCAGATCCTGGCGGTTGCTAGACCTGTGGTG
AAGTGGGGGCTGATGCCGGCCGTGCTCTGGATGGGAATGCGCACGGAGCC
GTCGCCGGGACTAATTGATGTATTGTACCCCTTCTGAATGAAAAACGCCG
ACCCCCAACGTTCGCGGCGGGACTGTCGGACGCATTCTCACTTGTTCCCG
GGCAGCACCAGGCGCCAAAACGGTGATGTTACGGTGCTCGCCACTAAAAT
ATTGTGCCGAAATAAAACAAAACAAAGTCGCGATTCGTATTTTTTCAGGA
AAGGAAAACCATCGATATGTTCGACCCTTGCAATAATGAATAATGAACTG
CATTCCGCTGCTAGCAATGTCAGGGAGTCACCATCCGTGCACATGACTTA
TACATTGCCTTTTTTTTACTGTTTCTGTATCACAACCTACCCGGTTGACT
TCGGTCGTGAAGTACAGCCAGTAGACCCCACAACCGATCGTAGTATTGTT
CCTTACCGTGGATTAGCGCGCCTTTTCGTGTCGTATCGAACTTTGAACTG
CTTCGAGCAGATCCTGGCGGTTGCTAGACCTGTGGTGAAGTGGGGGCTGA
TGCCGGCCGTGCTCTGGATGGGAATGCGCACGGAGCCGTCGCCGGGACTA
ATTGATGTATTGTACCCCTTCTGA
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