Gvermi3259.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3259.t1
Unique NameGvermi3259.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:803190..804540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707954.1
Preferred nameKATNA1
PFAMsAAA,Aminotran_1_2,Vps4_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00006
KEGG koko:K07767,ko:K11358
KEGG ReactionR00355,R00694,R00734,R00896,R02433,R02619,R05052
KEGG Pathwayko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230
GOsGO:0000096,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006521,GO:0006555,GO:0006558,GO:0006568,GO:0006569,GO:0006570,GO:0006576,GO:0006586,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009641,GO:0009698,GO:0009850,GO:0009851,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010252,GO:0010326,GO:0010364,GO:0010366,GO:0010565,GO:0010600,GO:0010817,GO:0016054,GO:0016740,GO:0016769,GO:0017144,GO:0019222,GO:0019439,GO:0019748,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031335,GO:0031336,GO:0032350,GO:0032351,GO:0032353,GO:0033238,GO:0033239,GO:0034641,GO:0042402,GO:0042430,GO:0042436,GO:0042445,GO:0042446,GO:0042592,GO:0042762,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0045763,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046885,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051175,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090354,GO:0090356,GO:0090357,GO:1900908,GO:1900909,GO:1900911,GO:1900912,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901996,GO:1901997,GO:1902221
Evalue2.34e-48
EggNOG OGsCOG0436@1|root,KOG0257@2759|Eukaryota
EC2.6.1.1,3.6.4.3
Descriptiontransferase activity, transferring nitrogenous groups
COG categoryE
BRITEko00000,ko00001,ko01000,ko01007,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3259Gvermi3259Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 803190..804540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3259.t1Gvermi3259.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 803190..804540 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3259.t1.stop1Gvermi3259.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 803190..803192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3259.t1.CDS1Gvermi3259.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 803190..804076 -
Gvermi3259.t1.CDS2Gvermi3259.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 804144..804540 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3259.t1.exon1Gvermi3259.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 803190..804076 -
Gvermi3259.t1.exon2Gvermi3259.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 804144..804540 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3259.t1.intron1Gvermi3259.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 804077..804143 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3259.t1.start1Gvermi3259.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 804538..804540 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3259.t1 ID=Gvermi3259.t1|Name=Gvermi3259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=428bp
MSKRVPSVSGRVLLTGAAIIDEMTQKYASAVDINLCQGAPRVGISQRVQN
KLCQMLQYSQTGMEFSRYGELVGIHRLRTLWGNVLDRGYSSQPELDSNDL
RDLDSIFPSHDFMITAGANQAFVNIILTICDQIVPVPVPVDQKTFLPQIR
DIEARITEKSKAVVPVNPDNPSGVVLPKSLLKEISTLCKNRGIWLILDEA
YREFLFNSESCFLSPVLDDHVIKLYTMSKVYGMAGWRVGAILYPKRIHTE
MNKVQDTIPTHASVTSQIAAYETLKENPLYKKDNYVNELRFVRSCFLEHL
KNVYSTIRNESFAVPNGAFYFFLPYDEMKYIPSKTEIEDRDAVDFLATNY
RILVLPGFSFGMCGYMRVSYDRVSGKQKKKVSIHFGEALRALLQYQKTRR
AKSGARLASKDPRETNSEGKRQLNFMT*
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spliced messenger RNA

>Gvermi3259.t1 ID=Gvermi3259.t1|Name=Gvermi3259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_41:803190..804540- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAAACGAGTACCATCTGTATCCGGTCGTGTACTGCTGACCGGTGC
GGCCATAATCGATGAAATGACCCAAAAGTATGCTTCAGCTGTTGACATTA
ATCTCTGTCAAGGCGCTCCTCGCGTTGGAATATCCCAAAGAGTTCAAAAT
AAACTTTGCCAGATGCTTCAATATTCTCAAACAGGGATGGAGTTCAGTAG
ATACGGAGAGCTTGTCGGCATACACAGACTGCGCACACTTTGGGGAAATG
TGCTGGACCGTGGATACAGTAGTCAACCAGAATTAGATAGTAATGACCTT
CGCGACCTTGATTCCATCTTTCCGTCACATGACTTTATGATTACGGCTGG
CGCAAATCAAGCATTTGTGAACATCATTCTAACCATTTGTGACCAAATTG
TACCCGTCCCCGTTCCCGTGGACCAAAAGACCTTTCTGCCTCAAATACGA
GATATAGAGGCACGAATAACTGAAAAAAGCAAAGCCGTTGTTCCTGTGAA
TCCAGATAATCCGTCAGGTGTTGTATTACCAAAATCGCTCTTAAAAGAAA
TATCTACTTTATGCAAGAACCGTGGAATATGGCTCATTCTTGATGAAGCG
TATCGCGAATTTTTGTTCAATAGCGAATCTTGCTTCCTTTCACCGGTATT
AGATGATCATGTTATCAAGCTCTATACCATGTCTAAGGTTTATGGCATGG
CTGGTTGGCGTGTCGGTGCTATTCTCTACCCCAAGCGAATACATACGGAA
ATGAACAAGGTGCAAGACACAATTCCAACCCATGCCTCCGTCACCAGCCA
GATCGCGGCATACGAAACGCTTAAAGAGAATCCCCTTTATAAGAAAGACA
ATTATGTCAATGAACTACGTTTCGTCAGATCCTGTTTCCTCGAGCATTTA
AAGAATGTTTATAGCACCATAAGAAATGAATCTTTTGCTGTTCCTAATGG
CGCGTTTTACTTCTTCCTTCCTTACGATGAAATGAAGTATATCCCCTCAA
AGACAGAAATTGAAGATAGAGATGCCGTGGATTTCCTCGCTACCAATTAT
CGTATTCTTGTTCTTCCTGGTTTTTCATTTGGAATGTGCGGATATATGCG
GGTTTCATATGATAGAGTCAGTGGAAAGCAAAAAAAGAAAGTCTCCATTC
ATTTTGGTGAAGCTCTTCGAGCCTTGCTACAATATCAGAAAACCCGTCGA
GCGAAATCTGGTGCGCGACTGGCATCAAAGGATCCGCGAGAAACGAATAG
CGAAGGAAAGCGACAGTTGAACTTCATGACATAG
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protein sequence of Gvermi3259.t1

>Gvermi3259.t1 ID=Gvermi3259.t1|Name=Gvermi3259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
MSKRVPSVSGRVLLTGAAIIDEMTQKYASAVDINLCQGAPRVGISQRVQN
KLCQMLQYSQTGMEFSRYGELVGIHRLRTLWGNVLDRGYSSQPELDSNDL
RDLDSIFPSHDFMITAGANQAFVNIILTICDQIVPVPVPVDQKTFLPQIR
DIEARITEKSKAVVPVNPDNPSGVVLPKSLLKEISTLCKNRGIWLILDEA
YREFLFNSESCFLSPVLDDHVIKLYTMSKVYGMAGWRVGAILYPKRIHTE
MNKVQDTIPTHASVTSQIAAYETLKENPLYKKDNYVNELRFVRSCFLEHL
KNVYSTIRNESFAVPNGAFYFFLPYDEMKYIPSKTEIEDRDAVDFLATNY
RILVLPGFSFGMCGYMRVSYDRVSGKQKKKVSIHFGEALRALLQYQKTRR
AKSGARLASKDPRETNSEGKRQLNFMT*
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mRNA from alignment at ScGOVlb_41:803190..804540-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3259.t1 ID=Gvermi3259.t1|Name=Gvermi3259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1351bp|location=Sequence derived from alignment at ScGOVlb_41:803190..804540- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTAAACGAGTACCATCTGTATCCGGTCGTGTACTGCTGACCGGTGC
GGCCATAATCGATGAAATGACCCAAAAGTATGCTTCAGCTGTTGACATTA
ATCTCTGTCAAGGCGCTCCTCGCGTTGGAATATCCCAAAGAGTTCAAAAT
AAACTTTGCCAGATGCTTCAATATTCTCAAACAGGGATGGAGTTCAGTAG
ATACGGAGAGCTTGTCGGCATACACAGACTGCGCACACTTTGGGGAAATG
TGCTGGACCGTGGATACAGTAGTCAACCAGAATTAGATAGTAATGACCTT
CGCGACCTTGATTCCATCTTTCCGTCACATGACTTTATGATTACGGCTGG
CGCAAATCAAGCATTTGTGAACATCATTCTAACCATTTGTGACCAAAGTG
ATCAAGTGATGCTAATTCTTCCTTATTATCTATCCCATTTTTAACGCGCT
TACCATGTCGAGAGTTGTACCCGTCCCCGTTCCCGTGGACCAAAAGACCT
TTCTGCCTCAAATACGAGATATAGAGGCACGAATAACTGAAAAAAGCAAA
GCCGTTGTTCCTGTGAATCCAGATAATCCGTCAGGTGTTGTATTACCAAA
ATCGCTCTTAAAAGAAATATCTACTTTATGCAAGAACCGTGGAATATGGC
TCATTCTTGATGAAGCGTATCGCGAATTTTTGTTCAATAGCGAATCTTGC
TTCCTTTCACCGGTATTAGATGATCATGTTATCAAGCTCTATACCATGTC
TAAGGTTTATGGCATGGCTGGTTGGCGTGTCGGTGCTATTCTCTACCCCA
AGCGAATACATACGGAAATGAACAAGGTGCAAGACACAATTCCAACCCAT
GCCTCCGTCACCAGCCAGATCGCGGCATACGAAACGCTTAAAGAGAATCC
CCTTTATAAGAAAGACAATTATGTCAATGAACTACGTTTCGTCAGATCCT
GTTTCCTCGAGCATTTAAAGAATGTTTATAGCACCATAAGAAATGAATCT
TTTGCTGTTCCTAATGGCGCGTTTTACTTCTTCCTTCCTTACGATGAAAT
GAAGTATATCCCCTCAAAGACAGAAATTGAAGATAGAGATGCCGTGGATT
TCCTCGCTACCAATTATCGTATTCTTGTTCTTCCTGGTTTTTCATTTGGA
ATGTGCGGATATATGCGGGTTTCATATGATAGAGTCAGTGGAAAGCAAAA
AAAGAAAGTCTCCATTCATTTTGGTGAAGCTCTTCGAGCCTTGCTACAAT
ATCAGAAAACCCGTCGAGCGAAATCTGGTGCGCGACTGGCATCAAAGGAT
CCGCGAGAAACGAATAGCGAAGGAAAGCGACAGTTGAACTTCATGACATA
G
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Coding sequence (CDS) from alignment at ScGOVlb_41:803190..804540-

>Gvermi3259.t1 ID=Gvermi3259.t1|Name=Gvermi3259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1284bp|location=Sequence derived from alignment at ScGOVlb_41:803190..804540- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTAAACGAGTACCATCTGTATCCGGTCGTGTACTGCTGACCGGTGC
GGCCATAATCGATGAAATGACCCAAAAGTATGCTTCAGCTGTTGACATTA
ATCTCTGTCAAGGCGCTCCTCGCGTTGGAATATCCCAAAGAGTTCAAAAT
AAACTTTGCCAGATGCTTCAATATTCTCAAACAGGGATGGAGTTCAGTAG
ATACGGAGAGCTTGTCGGCATACACAGACTGCGCACACTTTGGGGAAATG
TGCTGGACCGTGGATACAGTAGTCAACCAGAATTAGATAGTAATGACCTT
CGCGACCTTGATTCCATCTTTCCGTCACATGACTTTATGATTACGGCTGG
CGCAAATCAAGCATTTGTGAACATCATTCTAACCATTTGTGACCAAATTG
TACCCGTCCCCGTTCCCGTGGACCAAAAGACCTTTCTGCCTCAAATACGA
GATATAGAGGCACGAATAACTGAAAAAAGCAAAGCCGTTGTTCCTGTGAA
TCCAGATAATCCGTCAGGTGTTGTATTACCAAAATCGCTCTTAAAAGAAA
TATCTACTTTATGCAAGAACCGTGGAATATGGCTCATTCTTGATGAAGCG
TATCGCGAATTTTTGTTCAATAGCGAATCTTGCTTCCTTTCACCGGTATT
AGATGATCATGTTATCAAGCTCTATACCATGTCTAAGGTTTATGGCATGG
CTGGTTGGCGTGTCGGTGCTATTCTCTACCCCAAGCGAATACATACGGAA
ATGAACAAGGTGCAAGACACAATTCCAACCCATGCCTCCGTCACCAGCCA
GATCGCGGCATACGAAACGCTTAAAGAGAATCCCCTTTATAAGAAAGACA
ATTATGTCAATGAACTACGTTTCGTCAGATCCTGTTTCCTCGAGCATTTA
AAGAATGTTTATAGCACCATAAGAAATGAATCTTTTGCTGTTCCTAATGG
CGCGTTTTACTTCTTCCTTCCTTACGATGAAATGAAGTATATCCCCTCAA
AGACAGAAATTGAAGATAGAGATGCCGTGGATTTCCTCGCTACCAATTAT
CGTATTCTTGTTCTTCCTGGTTTTTCATTTGGAATGTGCGGATATATGCG
GGTTTCATATGATAGAGTCAGTGGAAAGCAAAAAAAGAAAGTCTCCATTC
ATTTTGGTGAAGCTCTTCGAGCCTTGCTACAATATCAGAAAACCCGTCGA
GCGAAATCTGGTGCGCGACTGGCATCAAAGGATCCGCGAGAAACGAATAG
CGAAGGAAAGCGACAGTTGAACTTCATGACATAG
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