Gvermi3174.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3174.t1
Unique NameGvermi3174.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:398422..399142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27923.ML276926a-PA
Preferred nameTMCO1
PFAMsDUF106
Max annot lvl33208|Metazoa
KEGG koko:K21891
KEGG TC1.A.106.1
GOsGO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006983,GO:0006984,GO:0007154,GO:0007165,GO:0008150,GO:0008324,GO:0009607,GO:0009987,GO:0012505,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0019725,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032469,GO:0033554,GO:0034220,GO:0034976,GO:0042175,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071216,GO:0072503,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098827
Evalue2.88e-29
EggNOG OGsKOG3312@1|root,KOG3312@2759|Eukaryota,38HWF@33154|Opisthokonta,3B9XD@33208|Metazoa
Descriptionendoplasmic reticulum calcium ion homeostasis
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3174Gvermi3174Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 398422..399142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3174.t1Gvermi3174.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 398422..399142 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3174.t1.stop1Gvermi3174.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 398422..398424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3174.t1.CDS1Gvermi3174.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 398422..398840 -
Gvermi3174.t1.CDS2Gvermi3174.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 398919..398996 -
Gvermi3174.t1.CDS3Gvermi3174.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 399070..399142 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3174.t1.exon1Gvermi3174.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 398422..398840 -
Gvermi3174.t1.exon2Gvermi3174.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 398919..398996 -
Gvermi3174.t1.exon3Gvermi3174.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 399070..399142 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3174.t1.intron1Gvermi3174.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 398841..398918 -
Gvermi3174.t1.intron2Gvermi3174.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 398997..399069 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3174.t1.start1Gvermi3174.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 399140..399142 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3174.t1 ID=Gvermi3174.t1|Name=Gvermi3174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=190bp
MTLADAYGAFAIVGIVSVSTILAEFFSYLLVYNTEDYIRACVRVRELNKK
LDKEDRKIVSVEKRKSHEKAVDRLEEELKQASQKMDGLKLRSNVLIGVAF
LFLYRMVAAAWTGHVVARLPFLPIKLIQPLSFRGLKGDDYYQCSFGFIYT
LSTMGIKANIPRLLGFNPPKSRMNAARLAARQQRKSNLE*
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spliced messenger RNA

>Gvermi3174.t1 ID=Gvermi3174.t1|Name=Gvermi3174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=570bp|location=Sequence derived from alignment at ScGOVlb_41:398422..399142- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACTTGCAGACGCGTACGGTGCCTTTGCTATAGTGGGAATCGTTTC
CGTTTCCACAATATTAGCTGAATTTTTTTCTTATCTCCTCGTGTACAACA
CAGAAGATTACATTCGTGCATGTGTTAGGGTGCGAGAGTTGAACAAGAAA
CTTGATAAGGAAGATCGAAAGATTGTATCGGTTGAGAAGCGCAAATCCCA
TGAAAAGGCGGTGGATCGATTGGAGGAAGAGCTCAAACAGGCCAGTCAAA
AGATGGACGGGCTGAAACTGCGCAGCAACGTGTTAATCGGCGTTGCATTT
CTATTCCTGTACCGAATGGTGGCCGCTGCGTGGACAGGCCATGTAGTTGC
TCGTCTTCCTTTCCTACCGATCAAGCTAATTCAACCATTGTCATTCCGTG
GTCTGAAAGGAGATGACTATTACCAGTGTTCGTTCGGTTTCATTTACACC
CTTTCAACAATGGGAATAAAAGCTAATATTCCGAGACTGCTTGGTTTCAA
TCCTCCAAAGTCAAGAATGAACGCCGCTAGATTGGCTGCTAGGCAACAAC
GAAAGTCCAACTTGGAGTAG
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protein sequence of Gvermi3174.t1

>Gvermi3174.t1 ID=Gvermi3174.t1|Name=Gvermi3174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=190bp
MTLADAYGAFAIVGIVSVSTILAEFFSYLLVYNTEDYIRACVRVRELNKK
LDKEDRKIVSVEKRKSHEKAVDRLEEELKQASQKMDGLKLRSNVLIGVAF
LFLYRMVAAAWTGHVVARLPFLPIKLIQPLSFRGLKGDDYYQCSFGFIYT
LSTMGIKANIPRLLGFNPPKSRMNAARLAARQQRKSNLE*
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mRNA from alignment at ScGOVlb_41:398422..399142-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3174.t1 ID=Gvermi3174.t1|Name=Gvermi3174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=721bp|location=Sequence derived from alignment at ScGOVlb_41:398422..399142- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACACTTGCAGACGCGTACGGTGCCTTTGCTATAGTGGGAATCGTTTC
CGTTTCCACAATATTAGCTGAATGTATGTTCCTTAACGGTCAGAACGCAA
ATAACAGTCACAAACTTCCGCTGACCACACTTTCCGTGAAAACCAGTTTT
TTCTTATCTCCTCGTGTACAACACAGAAGATTACATTCGTGCATGTGTTA
GGGTGCGAGAGTTGAACAAGAAACGTAAGTGCAAACAGTCCTCTCTATCT
TTCAAATGCACGCAGTGCAGGTTAAGACTAAACGCATTCATATTTTTTAC
AGTTGATAAGGAAGATCGAAAGATTGTATCGGTTGAGAAGCGCAAATCCC
ATGAAAAGGCGGTGGATCGATTGGAGGAAGAGCTCAAACAGGCCAGTCAA
AAGATGGACGGGCTGAAACTGCGCAGCAACGTGTTAATCGGCGTTGCATT
TCTATTCCTGTACCGAATGGTGGCCGCTGCGTGGACAGGCCATGTAGTTG
CTCGTCTTCCTTTCCTACCGATCAAGCTAATTCAACCATTGTCATTCCGT
GGTCTGAAAGGAGATGACTATTACCAGTGTTCGTTCGGTTTCATTTACAC
CCTTTCAACAATGGGAATAAAAGCTAATATTCCGAGACTGCTTGGTTTCA
ATCCTCCAAAGTCAAGAATGAACGCCGCTAGATTGGCTGCTAGGCAACAA
CGAAAGTCCAACTTGGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:398422..399142-

>Gvermi3174.t1 ID=Gvermi3174.t1|Name=Gvermi3174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=570bp|location=Sequence derived from alignment at ScGOVlb_41:398422..399142- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACACTTGCAGACGCGTACGGTGCCTTTGCTATAGTGGGAATCGTTTC
CGTTTCCACAATATTAGCTGAATTTTTTTCTTATCTCCTCGTGTACAACA
CAGAAGATTACATTCGTGCATGTGTTAGGGTGCGAGAGTTGAACAAGAAA
CTTGATAAGGAAGATCGAAAGATTGTATCGGTTGAGAAGCGCAAATCCCA
TGAAAAGGCGGTGGATCGATTGGAGGAAGAGCTCAAACAGGCCAGTCAAA
AGATGGACGGGCTGAAACTGCGCAGCAACGTGTTAATCGGCGTTGCATTT
CTATTCCTGTACCGAATGGTGGCCGCTGCGTGGACAGGCCATGTAGTTGC
TCGTCTTCCTTTCCTACCGATCAAGCTAATTCAACCATTGTCATTCCGTG
GTCTGAAAGGAGATGACTATTACCAGTGTTCGTTCGGTTTCATTTACACC
CTTTCAACAATGGGAATAAAAGCTAATATTCCGAGACTGCTTGGTTTCAA
TCCTCCAAAGTCAAGAATGAACGCCGCTAGATTGGCTGCTAGGCAACAAC
GAAAGTCCAACTTGGAGTAG
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