Gvermi3577.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3577.t1
Unique NameGvermi3577.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length549
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3438617..3440263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121875.KB907554_gene521
PFAMsBeta_helix,CUB,Calx-beta,SdrD_B
Max annot lvl976|Bacteroidetes
Evalue5.35e-16
EggNOG OGsCOG2931@1|root,COG3210@1|root,COG3420@1|root,COG2931@2|Bacteria,COG3210@2|Bacteria,COG3420@2|Bacteria,4PNSZ@976|Bacteroidetes,1IKBE@117743|Flavobacteriia
DescriptionSdrD B-like domain
COG categoryPQU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3577Gvermi3577Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3438617..3440263 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3577.t1.stop1Gvermi3577.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3438617..3438619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3577.t1.CDS1Gvermi3577.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3438617..3440263 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3577.t1.exon1Gvermi3577.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3438617..3440263 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3577.t1.start1Gvermi3577.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3440261..3440263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3577.t1Gvermi3577.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3438617..3440263 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3577.t1 ID=Gvermi3577.t1|Name=Gvermi3577.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=549bp
MASSIKQILLFLSILFVSQATKAPSKQLTSLFAPQHGEIPKKRCINLGTW
YEAVGPFEPELGLIHYKNPSPKFFSRPSIRINGTGFDKAFTTQRRGDLIS
FVLKADTRFRYQVTLGFAEIKQGRCKIGSRILNLNVQGVPKFGVDVFRAA
GCRKPYYVTFKNVKPGRLGYISAFVRGIKNEAQVAVVCVERVGNAPAPSP
LLPSPVSRPSSTPSPVPSPVSVRPSSTPSPVPSPVPVRPSSTPSPVPSPV
PVRPSSTPSPVPSPVPVRPSASPTPAAALKPSVCQQQGCFTFDGPGDYEV
IGNSLSLDEDRENCRIRSSSSARLTIPQGAQVKKAILYWSASGKLEEKAK
ATLNGVTYNADKVFSGGYQRISFYGAWADVTSAVQKNGVYNVAGIWNNNG
NPYCSFNSAYAAWTIVVIYERPDLPNARVNFCANDFTFTYPAGTYTNTVG
CIEGTPTTTAAKTTVVSFESDGYKGENFFINGAFLGDNLFRGTTAPNFDI
RSFDLRNVVRAQVRFISYTIRSYFTKTRFGGATEGLFLPIRVVYYTLD*
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spliced messenger RNA

>Gvermi3577.t1 ID=Gvermi3577.t1|Name=Gvermi3577.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at ScGOVlb_41:3438617..3440263- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCATCAATCAAGCAAATACTTCTCTTTTTATCCATTCTTTTCGT
TTCTCAAGCGACGAAGGCGCCCTCAAAACAGCTGACTTCTCTCTTCGCTC
CTCAGCATGGAGAAATACCTAAAAAGCGTTGCATCAACCTCGGAACATGG
TATGAAGCTGTCGGACCATTTGAACCAGAACTGGGGCTTATCCATTACAA
GAATCCGAGTCCGAAGTTCTTTTCTCGACCATCCATTCGAATTAACGGAA
CCGGATTTGATAAGGCCTTTACCACACAAAGAAGAGGTGACCTCATTTCT
TTTGTCCTGAAAGCTGATACTCGTTTCAGGTATCAGGTTACCCTTGGTTT
TGCTGAAATCAAACAAGGAAGATGCAAAATCGGGTCTAGGATATTGAATC
TCAACGTGCAAGGAGTTCCCAAATTTGGGGTAGATGTATTCAGAGCCGCA
GGGTGTCGTAAGCCATACTACGTCACTTTCAAAAATGTAAAACCGGGCCG
CCTAGGGTATATATCGGCATTCGTTCGTGGAATCAAGAATGAGGCTCAAG
TTGCTGTTGTCTGTGTTGAGAGGGTCGGAAATGCGCCGGCGCCCTCCCCA
TTGCTTCCTTCGCCAGTTTCTCGCCCTTCTTCAACACCCTCTCCGGTACC
ATCTCCAGTTTCAGTTCGTCCTTCTTCGACACCCTCTCCGGTACCATCTC
CAGTTCCCGTTCGCCCCTCCTCAACTCCCTCTCCGGTACCATCTCCAGTT
CCCGTTCGCCCTTCCTCAACTCCCTCTCCGGTACCGTCTCCAGTTCCAGT
TCGTCCTTCTGCTTCTCCGACTCCCGCCGCCGCTTTGAAACCTTCTGTAT
GCCAACAACAAGGTTGTTTTACCTTTGATGGTCCAGGAGACTATGAAGTG
ATTGGTAACTCTCTCAGTCTCGATGAGGATAGGGAAAATTGTAGAATTCG
GTCATCCAGTTCTGCAAGATTGACAATCCCACAAGGCGCACAGGTCAAGA
AGGCCATCTTGTATTGGTCTGCATCTGGGAAACTTGAGGAGAAGGCAAAG
GCTACATTGAATGGTGTGACCTATAATGCGGATAAAGTCTTTTCTGGAGG
TTATCAACGGATTTCATTTTACGGTGCATGGGCAGATGTAACCTCGGCTG
TGCAGAAGAATGGCGTCTACAACGTGGCTGGAATCTGGAACAACAATGGG
AACCCCTACTGTTCGTTCAATTCAGCATATGCAGCTTGGACTATAGTCGT
GATATACGAACGACCCGACCTTCCAAATGCCCGCGTGAATTTCTGCGCAA
ACGATTTCACGTTCACATACCCTGCCGGTACATACACGAATACCGTCGGA
TGCATCGAAGGGACTCCGACAACTACAGCTGCTAAAACAACGGTGGTATC
CTTTGAAAGTGATGGATATAAGGGTGAAAACTTTTTCATCAACGGGGCAT
TCCTTGGTGACAATCTCTTCCGTGGGACTACAGCTCCCAACTTTGATATT
CGCTCTTTCGATTTACGGAATGTCGTTAGGGCGCAGGTTCGTTTCATTTC
GTACACGATTCGTTCATACTTTACGAAGACCCGCTTTGGTGGGGCTACTG
AAGGTTTGTTTTTGCCCATTCGTGTAGTATATTACACACTCGATTGA
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protein sequence of Gvermi3577.t1

>Gvermi3577.t1 ID=Gvermi3577.t1|Name=Gvermi3577.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=549bp
MASSIKQILLFLSILFVSQATKAPSKQLTSLFAPQHGEIPKKRCINLGTW
YEAVGPFEPELGLIHYKNPSPKFFSRPSIRINGTGFDKAFTTQRRGDLIS
FVLKADTRFRYQVTLGFAEIKQGRCKIGSRILNLNVQGVPKFGVDVFRAA
GCRKPYYVTFKNVKPGRLGYISAFVRGIKNEAQVAVVCVERVGNAPAPSP
LLPSPVSRPSSTPSPVPSPVSVRPSSTPSPVPSPVPVRPSSTPSPVPSPV
PVRPSSTPSPVPSPVPVRPSASPTPAAALKPSVCQQQGCFTFDGPGDYEV
IGNSLSLDEDRENCRIRSSSSARLTIPQGAQVKKAILYWSASGKLEEKAK
ATLNGVTYNADKVFSGGYQRISFYGAWADVTSAVQKNGVYNVAGIWNNNG
NPYCSFNSAYAAWTIVVIYERPDLPNARVNFCANDFTFTYPAGTYTNTVG
CIEGTPTTTAAKTTVVSFESDGYKGENFFINGAFLGDNLFRGTTAPNFDI
RSFDLRNVVRAQVRFISYTIRSYFTKTRFGGATEGLFLPIRVVYYTLD*
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mRNA from alignment at ScGOVlb_41:3438617..3440263-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3577.t1 ID=Gvermi3577.t1|Name=Gvermi3577.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at ScGOVlb_41:3438617..3440263- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCATCAATCAAGCAAATACTTCTCTTTTTATCCATTCTTTTCGT
TTCTCAAGCGACGAAGGCGCCCTCAAAACAGCTGACTTCTCTCTTCGCTC
CTCAGCATGGAGAAATACCTAAAAAGCGTTGCATCAACCTCGGAACATGG
TATGAAGCTGTCGGACCATTTGAACCAGAACTGGGGCTTATCCATTACAA
GAATCCGAGTCCGAAGTTCTTTTCTCGACCATCCATTCGAATTAACGGAA
CCGGATTTGATAAGGCCTTTACCACACAAAGAAGAGGTGACCTCATTTCT
TTTGTCCTGAAAGCTGATACTCGTTTCAGGTATCAGGTTACCCTTGGTTT
TGCTGAAATCAAACAAGGAAGATGCAAAATCGGGTCTAGGATATTGAATC
TCAACGTGCAAGGAGTTCCCAAATTTGGGGTAGATGTATTCAGAGCCGCA
GGGTGTCGTAAGCCATACTACGTCACTTTCAAAAATGTAAAACCGGGCCG
CCTAGGGTATATATCGGCATTCGTTCGTGGAATCAAGAATGAGGCTCAAG
TTGCTGTTGTCTGTGTTGAGAGGGTCGGAAATGCGCCGGCGCCCTCCCCA
TTGCTTCCTTCGCCAGTTTCTCGCCCTTCTTCAACACCCTCTCCGGTACC
ATCTCCAGTTTCAGTTCGTCCTTCTTCGACACCCTCTCCGGTACCATCTC
CAGTTCCCGTTCGCCCCTCCTCAACTCCCTCTCCGGTACCATCTCCAGTT
CCCGTTCGCCCTTCCTCAACTCCCTCTCCGGTACCGTCTCCAGTTCCAGT
TCGTCCTTCTGCTTCTCCGACTCCCGCCGCCGCTTTGAAACCTTCTGTAT
GCCAACAACAAGGTTGTTTTACCTTTGATGGTCCAGGAGACTATGAAGTG
ATTGGTAACTCTCTCAGTCTCGATGAGGATAGGGAAAATTGTAGAATTCG
GTCATCCAGTTCTGCAAGATTGACAATCCCACAAGGCGCACAGGTCAAGA
AGGCCATCTTGTATTGGTCTGCATCTGGGAAACTTGAGGAGAAGGCAAAG
GCTACATTGAATGGTGTGACCTATAATGCGGATAAAGTCTTTTCTGGAGG
TTATCAACGGATTTCATTTTACGGTGCATGGGCAGATGTAACCTCGGCTG
TGCAGAAGAATGGCGTCTACAACGTGGCTGGAATCTGGAACAACAATGGG
AACCCCTACTGTTCGTTCAATTCAGCATATGCAGCTTGGACTATAGTCGT
GATATACGAACGACCCGACCTTCCAAATGCCCGCGTGAATTTCTGCGCAA
ACGATTTCACGTTCACATACCCTGCCGGTACATACACGAATACCGTCGGA
TGCATCGAAGGGACTCCGACAACTACAGCTGCTAAAACAACGGTGGTATC
CTTTGAAAGTGATGGATATAAGGGTGAAAACTTTTTCATCAACGGGGCAT
TCCTTGGTGACAATCTCTTCCGTGGGACTACAGCTCCCAACTTTGATATT
CGCTCTTTCGATTTACGGAATGTCGTTAGGGCGCAGGTTCGTTTCATTTC
GTACACGATTCGTTCATACTTTACGAAGACCCGCTTTGGTGGGGCTACTG
AAGGTTTGTTTTTGCCCATTCGTGTAGTATATTACACACTCGATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3438617..3440263-

>Gvermi3577.t1 ID=Gvermi3577.t1|Name=Gvermi3577.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1647bp|location=Sequence derived from alignment at ScGOVlb_41:3438617..3440263- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCATCAATCAAGCAAATACTTCTCTTTTTATCCATTCTTTTCGT
TTCTCAAGCGACGAAGGCGCCCTCAAAACAGCTGACTTCTCTCTTCGCTC
CTCAGCATGGAGAAATACCTAAAAAGCGTTGCATCAACCTCGGAACATGG
TATGAAGCTGTCGGACCATTTGAACCAGAACTGGGGCTTATCCATTACAA
GAATCCGAGTCCGAAGTTCTTTTCTCGACCATCCATTCGAATTAACGGAA
CCGGATTTGATAAGGCCTTTACCACACAAAGAAGAGGTGACCTCATTTCT
TTTGTCCTGAAAGCTGATACTCGTTTCAGGTATCAGGTTACCCTTGGTTT
TGCTGAAATCAAACAAGGAAGATGCAAAATCGGGTCTAGGATATTGAATC
TCAACGTGCAAGGAGTTCCCAAATTTGGGGTAGATGTATTCAGAGCCGCA
GGGTGTCGTAAGCCATACTACGTCACTTTCAAAAATGTAAAACCGGGCCG
CCTAGGGTATATATCGGCATTCGTTCGTGGAATCAAGAATGAGGCTCAAG
TTGCTGTTGTCTGTGTTGAGAGGGTCGGAAATGCGCCGGCGCCCTCCCCA
TTGCTTCCTTCGCCAGTTTCTCGCCCTTCTTCAACACCCTCTCCGGTACC
ATCTCCAGTTTCAGTTCGTCCTTCTTCGACACCCTCTCCGGTACCATCTC
CAGTTCCCGTTCGCCCCTCCTCAACTCCCTCTCCGGTACCATCTCCAGTT
CCCGTTCGCCCTTCCTCAACTCCCTCTCCGGTACCGTCTCCAGTTCCAGT
TCGTCCTTCTGCTTCTCCGACTCCCGCCGCCGCTTTGAAACCTTCTGTAT
GCCAACAACAAGGTTGTTTTACCTTTGATGGTCCAGGAGACTATGAAGTG
ATTGGTAACTCTCTCAGTCTCGATGAGGATAGGGAAAATTGTAGAATTCG
GTCATCCAGTTCTGCAAGATTGACAATCCCACAAGGCGCACAGGTCAAGA
AGGCCATCTTGTATTGGTCTGCATCTGGGAAACTTGAGGAGAAGGCAAAG
GCTACATTGAATGGTGTGACCTATAATGCGGATAAAGTCTTTTCTGGAGG
TTATCAACGGATTTCATTTTACGGTGCATGGGCAGATGTAACCTCGGCTG
TGCAGAAGAATGGCGTCTACAACGTGGCTGGAATCTGGAACAACAATGGG
AACCCCTACTGTTCGTTCAATTCAGCATATGCAGCTTGGACTATAGTCGT
GATATACGAACGACCCGACCTTCCAAATGCCCGCGTGAATTTCTGCGCAA
ACGATTTCACGTTCACATACCCTGCCGGTACATACACGAATACCGTCGGA
TGCATCGAAGGGACTCCGACAACTACAGCTGCTAAAACAACGGTGGTATC
CTTTGAAAGTGATGGATATAAGGGTGAAAACTTTTTCATCAACGGGGCAT
TCCTTGGTGACAATCTCTTCCGTGGGACTACAGCTCCCAACTTTGATATT
CGCTCTTTCGATTTACGGAATGTCGTTAGGGCGCAGGTTCGTTTCATTTC
GTACACGATTCGTTCATACTTTACGAAGACCCGCTTTGGTGGGGCTACTG
AAGGTTTGTTTTTGCCCATTCGTGTAGTATATTACACACTCGATTGA
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