Gvermi3818.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3818.t1
Unique NameGvermi3818.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4523223..4524136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707766.1
PFAMsPEMT
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K00550,ko:K00551
KEGG ReactionR01320,R02056,R03424
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
KEGG ModuleM00091
Evalue2.59e-53
EggNOG OGsKOG4142@1|root,KOG4142@2759|Eukaryota
EC2.1.1.17,2.1.1.71
Descriptionphosphatidyl-N-methylethanolamine N-methyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3818Gvermi3818Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4523223..4524136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3818.t1Gvermi3818.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4523223..4524136 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3818.t1.stop1Gvermi3818.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4523223..4523225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3818.t1.CDS1Gvermi3818.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4523223..4523274 -
Gvermi3818.t1.CDS2Gvermi3818.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4523369..4523443 -
Gvermi3818.t1.CDS3Gvermi3818.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4523550..4524136 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3818.t1.exon1Gvermi3818.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4523223..4523274 -
Gvermi3818.t1.exon2Gvermi3818.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4523369..4523443 -
Gvermi3818.t1.exon3Gvermi3818.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4523550..4524136 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3818.t1.intron1Gvermi3818.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 4523275..4523368 -
Gvermi3818.t1.intron2Gvermi3818.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 4523444..4523549 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3818.t1.start1Gvermi3818.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4524134..4524136 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3818.t1 ID=Gvermi3818.t1|Name=Gvermi3818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=238bp
MDKINEVLEYVDDFIPHVLYVPEPITTAAEYISDFCTSPSFPYRLRHIEI
GDVALWEAAIVIFLQPFIWNCVARFEYYTRILSKLFVKPIIGVYAVALWI
FFSSLYRDALFVAAMQTQQTALLLGNIEYQFFGISCLALGAILVSSSFYQ
LGVTGTYLGDYFGILMSEKVTAFPFNVFEHPMYDGSTLVFLGKAIMARSP
AGIFLTMWVYIVYRIACIFEGSFTEHIYAEKNKEKEQ*
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spliced messenger RNA

>Gvermi3818.t1 ID=Gvermi3818.t1|Name=Gvermi3818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=714bp|location=Sequence derived from alignment at ScGOVlb_41:4523223..4524136- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGATCAACGAGGTCCTCGAGTATGTAGACGACTTCATTCCTCA
CGTCCTTTATGTCCCTGAGCCAATCACTACGGCAGCAGAATACATAAGCG
ACTTTTGCACATCACCCTCATTTCCGTACCGACTGAGGCATATCGAAATT
GGCGACGTCGCCTTATGGGAGGCTGCCATTGTCATATTTCTGCAGCCATT
CATATGGAACTGCGTTGCCAGATTTGAGTACTACACGAGAATACTTTCTA
AGTTGTTCGTCAAACCTATAATTGGTGTGTATGCTGTGGCGCTTTGGATC
TTTTTCTCCAGCCTCTATCGCGATGCCCTTTTTGTAGCAGCTATGCAGAC
GCAACAAACGGCTCTTTTGTTGGGAAATATTGAGTACCAGTTTTTTGGCA
TTTCCTGCCTAGCGTTGGGAGCAATTCTCGTTTCGTCTTCCTTCTATCAA
CTGGGAGTCACAGGGACATATCTTGGTGATTATTTTGGGATACTTATGTC
CGAGAAAGTCACAGCATTTCCGTTTAATGTATTTGAGCACCCGATGTACG
ACGGATCTACATTAGTGTTTCTCGGAAAGGCCATAATGGCGCGAAGCCCA
GCTGGAATATTTCTGACAATGTGGGTGTACATTGTTTATCGTATAGCCTG
CATTTTTGAAGGCTCATTCACGGAACACATCTATGCTGAAAAGAACAAGG
AGAAAGAGCAATAG
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protein sequence of Gvermi3818.t1

>Gvermi3818.t1 ID=Gvermi3818.t1|Name=Gvermi3818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=238bp
MDKINEVLEYVDDFIPHVLYVPEPITTAAEYISDFCTSPSFPYRLRHIEI
GDVALWEAAIVIFLQPFIWNCVARFEYYTRILSKLFVKPIIGVYAVALWI
FFSSLYRDALFVAAMQTQQTALLLGNIEYQFFGISCLALGAILVSSSFYQ
LGVTGTYLGDYFGILMSEKVTAFPFNVFEHPMYDGSTLVFLGKAIMARSP
AGIFLTMWVYIVYRIACIFEGSFTEHIYAEKNKEKEQ*
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mRNA from alignment at ScGOVlb_41:4523223..4524136-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3818.t1 ID=Gvermi3818.t1|Name=Gvermi3818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=914bp|location=Sequence derived from alignment at ScGOVlb_41:4523223..4524136- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAAGATCAACGAGGTCCTCGAGTATGTAGACGACTTCATTCCTCA
CGTCCTTTATGTCCCTGAGCCAATCACTACGGCAGCAGAATACATAAGCG
ACTTTTGCACATCACCCTCATTTCCGTACCGACTGAGGCATATCGAAATT
GGCGACGTCGCCTTATGGGAGGCTGCCATTGTCATATTTCTGCAGCCATT
CATATGGAACTGCGTTGCCAGATTTGAGTACTACACGAGAATACTTTCTA
AGTTGTTCGTCAAACCTATAATTGGTGTGTATGCTGTGGCGCTTTGGATC
TTTTTCTCCAGCCTCTATCGCGATGCCCTTTTTGTAGCAGCTATGCAGAC
GCAACAAACGGCTCTTTTGTTGGGAAATATTGAGTACCAGTTTTTTGGCA
TTTCCTGCCTAGCGTTGGGAGCAATTCTCGTTTCGTCTTCCTTCTATCAA
CTGGGAGTCACAGGGACATATCTTGGTGATTATTTTGGGATACTTATGTC
CGAGAAAGTCACAGCATTTCCGTTTAATGTATTTGAGCACCCGATGTACG
ACGGATCTACATTAGTGTTTCTCGGAAAGGCCATAATGTAAGTCCATATC
GTTTTGGATCCGGTTGAGCTTTTATTGATTCGCTTTCTAACTGCTTTCAT
TTGCTGCTGTTTTTTGCTTACCACCCTTCCAATGACATAACAGGGCGCGA
AGCCCAGCTGGAATATTTCTGACAATGTGGGTGTACATTGTTTATCGTAT
AGCCTGCATTTTTGAAGGGTACGTTGGGCTCTATTTTCAAAATCACAACT
CGCTTCGCTTATCGCAGCTCACACAATTAACACTAACTTTGTTGTCATGT
ATTTTGACGTAGCTCATTCACGGAACACATCTATGCTGAAAAGAACAAGG
AGAAAGAGCAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:4523223..4524136-

>Gvermi3818.t1 ID=Gvermi3818.t1|Name=Gvermi3818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=714bp|location=Sequence derived from alignment at ScGOVlb_41:4523223..4524136- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAAGATCAACGAGGTCCTCGAGTATGTAGACGACTTCATTCCTCA
CGTCCTTTATGTCCCTGAGCCAATCACTACGGCAGCAGAATACATAAGCG
ACTTTTGCACATCACCCTCATTTCCGTACCGACTGAGGCATATCGAAATT
GGCGACGTCGCCTTATGGGAGGCTGCCATTGTCATATTTCTGCAGCCATT
CATATGGAACTGCGTTGCCAGATTTGAGTACTACACGAGAATACTTTCTA
AGTTGTTCGTCAAACCTATAATTGGTGTGTATGCTGTGGCGCTTTGGATC
TTTTTCTCCAGCCTCTATCGCGATGCCCTTTTTGTAGCAGCTATGCAGAC
GCAACAAACGGCTCTTTTGTTGGGAAATATTGAGTACCAGTTTTTTGGCA
TTTCCTGCCTAGCGTTGGGAGCAATTCTCGTTTCGTCTTCCTTCTATCAA
CTGGGAGTCACAGGGACATATCTTGGTGATTATTTTGGGATACTTATGTC
CGAGAAAGTCACAGCATTTCCGTTTAATGTATTTGAGCACCCGATGTACG
ACGGATCTACATTAGTGTTTCTCGGAAAGGCCATAATGGCGCGAAGCCCA
GCTGGAATATTTCTGACAATGTGGGTGTACATTGTTTATCGTATAGCCTG
CATTTTTGAAGGCTCATTCACGGAACACATCTATGCTGAAAAGAACAAGG
AGAAAGAGCAATAG
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