Gvermi3535.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3535.t1
Unique NameGvermi3535.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3111140..3111628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118166.JH976537_gene4187
Preferred namepdhA
PFAMsE1_dh
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Evalue1.34e-71
EggNOG OGsCOG1071@1|root,COG1071@2|Bacteria,1G00Z@1117|Cyanobacteria,1H7WM@1150|Oscillatoriales
EC1.2.4.1
DescriptionThe pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3535Gvermi3535Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3111140..3111628 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3535.t1.start1Gvermi3535.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3111140..3111142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3535.t1.CDS1Gvermi3535.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3111140..3111628 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3535.t1.exon1Gvermi3535.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3111140..3111628 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3535.t1.stop1Gvermi3535.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3111626..3111628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3535.t1Gvermi3535.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3111140..3111628 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3535.t1 ID=Gvermi3535.t1|Name=Gvermi3535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=163bp
MAVLWKLPIIFVVENNQWAIGMAHHRSTSLPEIHKKAEAFGLPGIEVDGM
DVLAIREIALAAINRARFGHGPTLIEALTYRFRGHSLADPDELRSINEKE
AWLARDPIKRLKNYILDHALFSEQEIEDVNLAVKTEINKAVEFAISSPEP
NVKDLKKYLFAD*
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spliced messenger RNA

>Gvermi3535.t1 ID=Gvermi3535.t1|Name=Gvermi3535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=489bp|location=Sequence derived from alignment at ScGOVlb_41:3111140..3111628+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTTCTGTGGAAATTACCTATTATTTTTGTGGTAGAAAATAACCA
ATGGGCAATTGGGATGGCTCATCATAGATCAACTTCATTACCTGAGATAC
ATAAAAAAGCAGAAGCATTTGGGTTGCCTGGTATAGAAGTAGACGGAATG
GATGTTTTGGCCATTCGCGAAATTGCTTTAGCCGCTATTAATAGAGCAAG
ATTTGGTCATGGTCCTACATTAATAGAAGCCCTGACTTATCGTTTTCGTG
GGCATTCTTTAGCAGATCCAGATGAATTAAGATCTATTAATGAAAAAGAA
GCATGGTTAGCTCGTGACCCTATTAAGCGTTTAAAAAACTATATTTTAGA
TCATGCTTTATTCTCAGAGCAAGAAATTGAAGATGTAAATTTAGCAGTAA
AGACAGAAATAAATAAAGCTGTTGAATTTGCTATATCTAGTCCTGAACCA
AATGTCAAAGACTTAAAAAAATATTTGTTTGCAGATTAA
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protein sequence of Gvermi3535.t1

>Gvermi3535.t1 ID=Gvermi3535.t1|Name=Gvermi3535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=163bp
MAVLWKLPIIFVVENNQWAIGMAHHRSTSLPEIHKKAEAFGLPGIEVDGM
DVLAIREIALAAINRARFGHGPTLIEALTYRFRGHSLADPDELRSINEKE
AWLARDPIKRLKNYILDHALFSEQEIEDVNLAVKTEINKAVEFAISSPEP
NVKDLKKYLFAD*
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mRNA from alignment at ScGOVlb_41:3111140..3111628+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3535.t1 ID=Gvermi3535.t1|Name=Gvermi3535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=489bp|location=Sequence derived from alignment at ScGOVlb_41:3111140..3111628+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGTTCTGTGGAAATTACCTATTATTTTTGTGGTAGAAAATAACCA
ATGGGCAATTGGGATGGCTCATCATAGATCAACTTCATTACCTGAGATAC
ATAAAAAAGCAGAAGCATTTGGGTTGCCTGGTATAGAAGTAGACGGAATG
GATGTTTTGGCCATTCGCGAAATTGCTTTAGCCGCTATTAATAGAGCAAG
ATTTGGTCATGGTCCTACATTAATAGAAGCCCTGACTTATCGTTTTCGTG
GGCATTCTTTAGCAGATCCAGATGAATTAAGATCTATTAATGAAAAAGAA
GCATGGTTAGCTCGTGACCCTATTAAGCGTTTAAAAAACTATATTTTAGA
TCATGCTTTATTCTCAGAGCAAGAAATTGAAGATGTAAATTTAGCAGTAA
AGACAGAAATAAATAAAGCTGTTGAATTTGCTATATCTAGTCCTGAACCA
AATGTCAAAGACTTAAAAAAATATTTGTTTGCAGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3111140..3111628+

>Gvermi3535.t1 ID=Gvermi3535.t1|Name=Gvermi3535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=489bp|location=Sequence derived from alignment at ScGOVlb_41:3111140..3111628+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGTTCTGTGGAAATTACCTATTATTTTTGTGGTAGAAAATAACCA
ATGGGCAATTGGGATGGCTCATCATAGATCAACTTCATTACCTGAGATAC
ATAAAAAAGCAGAAGCATTTGGGTTGCCTGGTATAGAAGTAGACGGAATG
GATGTTTTGGCCATTCGCGAAATTGCTTTAGCCGCTATTAATAGAGCAAG
ATTTGGTCATGGTCCTACATTAATAGAAGCCCTGACTTATCGTTTTCGTG
GGCATTCTTTAGCAGATCCAGATGAATTAAGATCTATTAATGAAAAAGAA
GCATGGTTAGCTCGTGACCCTATTAAGCGTTTAAAAAACTATATTTTAGA
TCATGCTTTATTCTCAGAGCAAGAAATTGAAGATGTAAATTTAGCAGTAA
AGACAGAAATAAATAAAGCTGTTGAATTTGCTATATCTAGTCCTGAACCA
AATGTCAAAGACTTAAAAAAATATTTGTTTGCAGATTAA
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