Gvermi3731.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3731.t1
Unique Name	Gvermi3731.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	627

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4107402..4109282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706681.1
PFAMs	Aa_trans,SAPS
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15501
Evalue	2.84e-21
EggNOG OGs	KOG2073@1\|root,KOG2073@2759\|Eukaryota
Description	protein phosphatase binding
COG category	S
BRITE	ko00000,ko01009,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3731	Gvermi3731	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4107402..4109282 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3731.t1.start1	Gvermi3731.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4107402..4107404 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3731.t1.CDS1	Gvermi3731.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4107402..4109282 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3731.t1.exon1	Gvermi3731.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4107402..4109282 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3731.t1.stop1	Gvermi3731.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4109280..4109282 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3731.t1	Gvermi3731.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4107402..4109282 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4107402..4109282+
coding sequence from alignment at ScGOVlb_41:4107402..4109282+

mRNA sequence

>Gvermi3731.t1 ID=Gvermi3731.t1|Name=Gvermi3731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp
MSGALGEGDSDSVKRLNRAFRVRPGMDGSMNLPSLAPTTAVPRSPLHGAV
AFRTVVEGTVAGRIPFDSLLDAMFRLEEKLHPDVKEMLIKFLSKQDNMHA
LIDRLTVVLPPAADDDDDDDGVLQSPAAERERYRYSYVACMLLSNGPIQL
RRSLFLNPKHLDRLVRVLGHGQPSDAVVVRYVCRVLHSVLRDSPEDTVRA
MGRRHGFIDALLSHIAVTGCPEVCLAMLSTVRCQAELKFGPSNKPVVGMM
ADSRLVHTLCDKLQAAAQRAPLDGTASCTIENCSRVIVGIALRALVIPRY
DVSDDDDDHANYMLKFNRDLASLDVFHDPTPMLRLLDAGLAALRAHDERG
YVLSTALTAARYLLKTALNGQDSSLSTIRLQLMAVNTAAYEAGVRERIAA
LADVLRHARSDAVVRTMWDTVHRPLGVVRLKILELLFVLLQHCGEATVRA
MIEAHIPRILMELFVRLRLNSLLQHFVSAIVEQAFAGRFCSLRRAFVLDV
RLLDTVMELWDVSTANSRSPAETPVTYVGELLRMCCAVHDFFKHDSPEAR
ELRAALGDHKWARFERLCNGPVADKLRENGPLCSAAELPARPGDALEFDG
YSGALGGSHGSLFTKPRAGGGAMVRS*

spliced messenger RNA

>Gvermi3731.t1 ID=Gvermi3731.t1|Name=Gvermi3731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at ScGOVlb_41:4107402..4109282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCGCGCTGGGCGAGGGCGACTCGGACAGCGTCAAGCGCCTCAA
CCGCGCCTTCCGCGTGCGCCCCGGCATGGACGGCTCCATGAACCTgccgt
cgctcgcgcccaccaccgccgtgccgcgctcgccgctgcacggcgccgtc
gccttccgcaccgtcgtcgagggcaccgtggccggccgcATCCCCTTCGA
CTCGCTGCTGGACGCCATGTTCCGCCTGGAGGAGAAGCTGCACCCGGACG
TCAAGGAGATGCTCATCAAGTTTTTGTCCAAGCAGGACAACATGCACGCG
CTCATCGACCGCCTCACCGTCGTgctgccgcccgccgccgacgacgacga
cgacgacgacggcgtcctgcagtcgcccgccgccgAGCGCGAGCGCTACC
GTTACTCGTACGTGGCGTGCATGCTGCTCAGCAACGGGCCCATTCAGCTG
CGGCGCTCGCTGTTCCTCAACCCCAAGCACCTCGACCGGCTGGTGCGCGT
GCTGGGGCACGGCCAGCCGTCCGACGCCGTCGTCGTGCGCTACGTGTGCC
GCGTGCTGCACAGCGTGCTGCGCGACTCGCCCGAGGACACGGTGCGCGCC
ATGGGCAGGCGCCACGGCTTCATCGACGCGCTGCTGTCGCACATTGCCGT
CACGGGCTGCCCCGAGGTGTGCCTGGCCATGCTGAGCACGGTGCGCTGCC
AGGCGGAGCTCAAGTTTGGGCCGTCCAACAAGCCGGTGGTGGGCATGATG
GCCGACTCGCGGCTGGTGCACACGCTGTGCGACAAGCTGCAGGCGGCGGC
GCAGCGCGCGCCGCTGGACGGCACGGCGTCGTGCACCATCGAGAACTGCT
CGCGCGTGATTGTGGGCATTGCGCTGCGCGCGCTGGTGATCCCGCGCTac
gacgtgagcgacgacgacgacgaccacgccaactacATGCTCAAGTTCAA
CCGCGACCTGGCGTCGCTGGACGTGTTCCACGACCCGACGCCCATGCTGC
GGCTGCTGGACGCGGGGCTGGCGGCGCTGCGCGCGCACGACGAGCGCGGC
TACGTGCTGTCGACGGCGCTGACGGCGGCGCGCTACCTGCTCAAGACGGC
GCTCAACGGGCAGGACTCGAGCCTGAGCACGATCCGGCTGCAGCTCATGG
CGGTGAACACGGCGGCGTACGAGGCGGGGGTGCGCGAGCGCATCGCGGCG
CTGGCCGACGTGCTGCGGCACGCCAGGAGCGACGCCGTGGTGCGCACGAT
GTGGGACACGGTGCACAGGCCGCTGGGGGTGGTGCGGCTCAAGATTTTGG
AGCTGCTGTTCGTGCTGCTGCAGCACTGCGGCGAGGCGACGGTGCGCGCC
ATGATCGAGGCGCACATCCCGCGCATCCTCATGGAGCTGTTCGTGCGGCT
GCGGCTCAACAGCCTGCTGCAGCACTTTGTGTCGGCCATCGTGGAGCAGG
CGTTCGCGGGGCGCTTCTGCTCGCTGCGGCGCGCGTTCGTGCTGGACGTG
CGGCTGCTGGACACCGTGATGGAGCTGTGGGACGTGTCGACGGCCAACAG
CCGCAGCCCCGCCGAGACGCCCGTCACGTACGTGGGCGAGCTGCTGCGCA
TGTGCTGCGCGGTGCACGACTTTTTCAAGCACGACTCGCCCGAGGCGCGC
GAGCTGCGCGCGGCGCTGGGCGACCACAAGTGGGCGCGCTTCGAGCGGCT
GTGCAACGGGCCGGTGGCCGACAAGCTGCGCGAGAACGGGCCGCTGTGCA
GCGCGGCGGAGCTGCCGGCGCGCCCGGGCGACGCGCTGGAGTTTGACGGC
TACTCGGGCGCGCTGGGCGGCAGCCACGGCTCGCTGTTCACCAAGCCGCG
CGCGGGCGGCGGCGCCATGGTGCGCTCGTGA

protein sequence of Gvermi3731.t1

>Gvermi3731.t1 ID=Gvermi3731.t1|Name=Gvermi3731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=627bp
MSGALGEGDSDSVKRLNRAFRVRPGMDGSMNLPSLAPTTAVPRSPLHGAV
AFRTVVEGTVAGRIPFDSLLDAMFRLEEKLHPDVKEMLIKFLSKQDNMHA
LIDRLTVVLPPAADDDDDDDGVLQSPAAERERYRYSYVACMLLSNGPIQL
RRSLFLNPKHLDRLVRVLGHGQPSDAVVVRYVCRVLHSVLRDSPEDTVRA
MGRRHGFIDALLSHIAVTGCPEVCLAMLSTVRCQAELKFGPSNKPVVGMM
ADSRLVHTLCDKLQAAAQRAPLDGTASCTIENCSRVIVGIALRALVIPRY
DVSDDDDDHANYMLKFNRDLASLDVFHDPTPMLRLLDAGLAALRAHDERG
YVLSTALTAARYLLKTALNGQDSSLSTIRLQLMAVNTAAYEAGVRERIAA
LADVLRHARSDAVVRTMWDTVHRPLGVVRLKILELLFVLLQHCGEATVRA
MIEAHIPRILMELFVRLRLNSLLQHFVSAIVEQAFAGRFCSLRRAFVLDV
RLLDTVMELWDVSTANSRSPAETPVTYVGELLRMCCAVHDFFKHDSPEAR
ELRAALGDHKWARFERLCNGPVADKLRENGPLCSAAELPARPGDALEFDG
YSGALGGSHGSLFTKPRAGGGAMVRS*

mRNA from alignment at ScGOVlb_41:4107402..4109282+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3731.t1 ID=Gvermi3731.t1|Name=Gvermi3731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at ScGOVlb_41:4107402..4109282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGCGCGCTGGGCGAGGGCGACTCGGACAGCGTCAAGCGCCTCAA
CCGCGCCTTCCGCGTGCGCCCCGGCATGGACGGCTCCATGAACCTgccgt
cgctcgcgcccaccaccgccgtgccgcgctcgccgctgcacggcgccgtc
gccttccgcaccgtcgtcgagggcaccgtggccggccgcATCCCCTTCGA
CTCGCTGCTGGACGCCATGTTCCGCCTGGAGGAGAAGCTGCACCCGGACG
TCAAGGAGATGCTCATCAAGTTTTTGTCCAAGCAGGACAACATGCACGCG
CTCATCGACCGCCTCACCGTCGTgctgccgcccgccgccgacgacgacga
cgacgacgacggcgtcctgcagtcgcccgccgccgAGCGCGAGCGCTACC
GTTACTCGTACGTGGCGTGCATGCTGCTCAGCAACGGGCCCATTCAGCTG
CGGCGCTCGCTGTTCCTCAACCCCAAGCACCTCGACCGGCTGGTGCGCGT
GCTGGGGCACGGCCAGCCGTCCGACGCCGTCGTCGTGCGCTACGTGTGCC
GCGTGCTGCACAGCGTGCTGCGCGACTCGCCCGAGGACACGGTGCGCGCC
ATGGGCAGGCGCCACGGCTTCATCGACGCGCTGCTGTCGCACATTGCCGT
CACGGGCTGCCCCGAGGTGTGCCTGGCCATGCTGAGCACGGTGCGCTGCC
AGGCGGAGCTCAAGTTTGGGCCGTCCAACAAGCCGGTGGTGGGCATGATG
GCCGACTCGCGGCTGGTGCACACGCTGTGCGACAAGCTGCAGGCGGCGGC
GCAGCGCGCGCCGCTGGACGGCACGGCGTCGTGCACCATCGAGAACTGCT
CGCGCGTGATTGTGGGCATTGCGCTGCGCGCGCTGGTGATCCCGCGCTac
gacgtgagcgacgacgacgacgaccacgccaactacATGCTCAAGTTCAA
CCGCGACCTGGCGTCGCTGGACGTGTTCCACGACCCGACGCCCATGCTGC
GGCTGCTGGACGCGGGGCTGGCGGCGCTGCGCGCGCACGACGAGCGCGGC
TACGTGCTGTCGACGGCGCTGACGGCGGCGCGCTACCTGCTCAAGACGGC
GCTCAACGGGCAGGACTCGAGCCTGAGCACGATCCGGCTGCAGCTCATGG
CGGTGAACACGGCGGCGTACGAGGCGGGGGTGCGCGAGCGCATCGCGGCG
CTGGCCGACGTGCTGCGGCACGCCAGGAGCGACGCCGTGGTGCGCACGAT
GTGGGACACGGTGCACAGGCCGCTGGGGGTGGTGCGGCTCAAGATTTTGG
AGCTGCTGTTCGTGCTGCTGCAGCACTGCGGCGAGGCGACGGTGCGCGCC
ATGATCGAGGCGCACATCCCGCGCATCCTCATGGAGCTGTTCGTGCGGCT
GCGGCTCAACAGCCTGCTGCAGCACTTTGTGTCGGCCATCGTGGAGCAGG
CGTTCGCGGGGCGCTTCTGCTCGCTGCGGCGCGCGTTCGTGCTGGACGTG
CGGCTGCTGGACACCGTGATGGAGCTGTGGGACGTGTCGACGGCCAACAG
CCGCAGCCCCGCCGAGACGCCCGTCACGTACGTGGGCGAGCTGCTGCGCA
TGTGCTGCGCGGTGCACGACTTTTTCAAGCACGACTCGCCCGAGGCGCGC
GAGCTGCGCGCGGCGCTGGGCGACCACAAGTGGGCGCGCTTCGAGCGGCT
GTGCAACGGGCCGGTGGCCGACAAGCTGCGCGAGAACGGGCCGCTGTGCA
GCGCGGCGGAGCTGCCGGCGCGCCCGGGCGACGCGCTGGAGTTTGACGGC
TACTCGGGCGCGCTGGGCGGCAGCCACGGCTCGCTGTTCACCAAGCCGCG
CGCGGGCGGCGGCGCCATGGTGCGCTCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:4107402..4109282+

>Gvermi3731.t1 ID=Gvermi3731.t1|Name=Gvermi3731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1881bp|location=Sequence derived from alignment at ScGOVlb_41:4107402..4109282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGCGCGCTGGGCGAGGGCGACTCGGACAGCGTCAAGCGCCTCAA
CCGCGCCTTCCGCGTGCGCCCCGGCATGGACGGCTCCATGAACCTgccgt
cgctcgcgcccaccaccgccgtgccgcgctcgccgctgcacggcgccgtc
gccttccgcaccgtcgtcgagggcaccgtggccggccgcATCCCCTTCGA
CTCGCTGCTGGACGCCATGTTCCGCCTGGAGGAGAAGCTGCACCCGGACG
TCAAGGAGATGCTCATCAAGTTTTTGTCCAAGCAGGACAACATGCACGCG
CTCATCGACCGCCTCACCGTCGTgctgccgcccgccgccgacgacgacga
cgacgacgacggcgtcctgcagtcgcccgccgccgAGCGCGAGCGCTACC
GTTACTCGTACGTGGCGTGCATGCTGCTCAGCAACGGGCCCATTCAGCTG
CGGCGCTCGCTGTTCCTCAACCCCAAGCACCTCGACCGGCTGGTGCGCGT
GCTGGGGCACGGCCAGCCGTCCGACGCCGTCGTCGTGCGCTACGTGTGCC
GCGTGCTGCACAGCGTGCTGCGCGACTCGCCCGAGGACACGGTGCGCGCC
ATGGGCAGGCGCCACGGCTTCATCGACGCGCTGCTGTCGCACATTGCCGT
CACGGGCTGCCCCGAGGTGTGCCTGGCCATGCTGAGCACGGTGCGCTGCC
AGGCGGAGCTCAAGTTTGGGCCGTCCAACAAGCCGGTGGTGGGCATGATG
GCCGACTCGCGGCTGGTGCACACGCTGTGCGACAAGCTGCAGGCGGCGGC
GCAGCGCGCGCCGCTGGACGGCACGGCGTCGTGCACCATCGAGAACTGCT
CGCGCGTGATTGTGGGCATTGCGCTGCGCGCGCTGGTGATCCCGCGCTac
gacgtgagcgacgacgacgacgaccacgccaactacATGCTCAAGTTCAA
CCGCGACCTGGCGTCGCTGGACGTGTTCCACGACCCGACGCCCATGCTGC
GGCTGCTGGACGCGGGGCTGGCGGCGCTGCGCGCGCACGACGAGCGCGGC
TACGTGCTGTCGACGGCGCTGACGGCGGCGCGCTACCTGCTCAAGACGGC
GCTCAACGGGCAGGACTCGAGCCTGAGCACGATCCGGCTGCAGCTCATGG
CGGTGAACACGGCGGCGTACGAGGCGGGGGTGCGCGAGCGCATCGCGGCG
CTGGCCGACGTGCTGCGGCACGCCAGGAGCGACGCCGTGGTGCGCACGAT
GTGGGACACGGTGCACAGGCCGCTGGGGGTGGTGCGGCTCAAGATTTTGG
AGCTGCTGTTCGTGCTGCTGCAGCACTGCGGCGAGGCGACGGTGCGCGCC
ATGATCGAGGCGCACATCCCGCGCATCCTCATGGAGCTGTTCGTGCGGCT
GCGGCTCAACAGCCTGCTGCAGCACTTTGTGTCGGCCATCGTGGAGCAGG
CGTTCGCGGGGCGCTTCTGCTCGCTGCGGCGCGCGTTCGTGCTGGACGTG
CGGCTGCTGGACACCGTGATGGAGCTGTGGGACGTGTCGACGGCCAACAG
CCGCAGCCCCGCCGAGACGCCCGTCACGTACGTGGGCGAGCTGCTGCGCA
TGTGCTGCGCGGTGCACGACTTTTTCAAGCACGACTCGCCCGAGGCGCGC
GAGCTGCGCGCGGCGCTGGGCGACCACAAGTGGGCGCGCTTCGAGCGGCT
GTGCAACGGGCCGGTGGCCGACAAGCTGCGCGAGAACGGGCCGCTGTGCA
GCGCGGCGGAGCTGCCGGCGCGCCCGGGCGACGCGCTGGAGTTTGACGGC
TACTCGGGCGCGCTGGGCGGCAGCCACGGCTCGCTGTTCACCAAGCCGCG
CGCGGGCGGCGGCGCCATGGTGCGCTCGTGA