Gvermi3218.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3218.t1
Unique NameGvermi3218.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length563
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:654088..655776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122611.KB903969_gene2379
PFAMsAn_peroxidase
Max annot lvl201174|Actinobacteria
KEGG rclassRC00559,RC00982
KEGG koko:K11987
KEGG ReactionR00073,R01590
KEGG Pathwayko00590,ko01100,ko04064,ko04370,ko04657,ko04668,ko04723,ko04726,ko04913,ko04921,ko04923,ko05140,ko05165,ko05167,ko05200,ko05204,ko05206,ko05222,map00590,map01100,map04064,map04370,map04657,map04668,map04723,map04726,map04913,map04921,map04923,map05140,map05165,map05167,map05200,map05204,map05206,map05222
Evalue2.25e-42
EggNOG OGsCOG2124@1|root,COG2124@2|Bacteria,2I4RR@201174|Actinobacteria,4EG01@85012|Streptosporangiales
EC1.14.99.1
DescriptionAnimal haem peroxidase
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3218Gvermi3218Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 654088..655776 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3218.t1.stop1Gvermi3218.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 654088..654090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3218.t1.CDS1Gvermi3218.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 654088..655776 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3218.t1.exon1Gvermi3218.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 654088..655776 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3218.t1.start1Gvermi3218.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 655774..655776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3218.t1Gvermi3218.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 654088..655776 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3218.t1 ID=Gvermi3218.t1|Name=Gvermi3218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=563bp
MVFNNFRNLITRCGGLGNTFSMWLRANFKPFWAALQNIPVIKDVLNQFYL
SALLKKFIKSVPRLPNHNLRNDFPSLYTVYDESRTTYSRLLPRQPEYTEG
LPDLDLASSCFLRENFVPETNRNLSLLIGFYAQWFSHQFFNTNPEDHTKV
NQPVGINLGQLYGSTAERMKSLRSGKLGLLKSSVRNGLEFPPIIPIPKDE
SGQNKIPIPGDEMFDIPFPMANSIPCFAAVHVIFFRRHQYVCRELAKWAS
ANGKTMSDEEMYQKAKIIVAINVLRLTMHDYVAEGLQSSHVKIKFDHKVK
KSLIWKFFGPGTYHPSNAIQTEFNFLYRWHQFIPEEIKVVKDLPVSNNQD
MKALVPDIDKYDNDSLTFPDPDSWFGEDWNAVKWLTEKENGLERLIFSAA
SQRAGKLTLLNTNKWLVKNVIKPGMKKCREYELASYNDYREHFGFRRVKK
FEQITTDAAILAKLKQVYKDVDQVEYYPGIFAENKDFGGVHGPFLAAIGV
GMTYCGIFASRLFETDIFNEKTLTSKGVELANEINYIRDVTRMHTNLGEA
KVHFTVPKNNPV*
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spliced messenger RNA

>Gvermi3218.t1 ID=Gvermi3218.t1|Name=Gvermi3218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at ScGOVlb_41:654088..655776- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCAACAACTTCCGCAATTTGATAACGCGCTGTGGCGGCCTTGG
AAATACGTTTTCAATGTGGCTTCGTGCCAACTTCAAGCCCTTTTGGGCTG
CGCTCCAGAACATTCCTGTGATCAAGGATGTTTTGAACCAATTCTACTTG
TCAGCCTTACTGAAGAAGTTCATCAAGAGCGTACCACGCCTTCCAAACCA
TAATTTGAGGAATGATTTCCCCTCATTGTACACTGTTTATGACGAGTCGC
GTACGACTTATTCTCGCTTACTTCCTCGTCAACCCGAGTACACCGAAGGT
CTTCCTGACCTAGATCTTGCTTCTTCCTGTTTTCTGCGGGAAAACTTTGT
TCCCGAAACCAACCGTAACCTCTCTCTTTTGATCGGATTTTATGCTCAGT
GGTTCTCTCACCAGTTCTTCAACACCAACCCCGAAGACCACACAAAGGTG
AATCAGCCCGTCGGAATCAATCTCGGTCAGTTGTATGGATCCACGGCCGA
GCGAATGAAATCCCTTCGCTCCGGTAAACTTGGTCTGCTCAAGTCATCAG
TAAGAAACGGATTAGAGTTCCCACCCATCATACCTATTCCCAAGGACGAG
AGTGGCCAGAATAAGATACCAATTCCAGGCGATGAGATGTTTGATATTCC
CTTCCCCATGGCTAACTCAATCCCATGTTTTGCCGCTGTGCATGTCATCT
TTTTCAGGAGACATCAATACGTTTGCCGTGAACTTGCCAAGTGGGCCAGC
GCAAATGGCAAGACTATGAGCGATGAAGAGATGTATCAGAAGGCCAAGAT
CATTGTGGCTATCAATGTCCTTCGTCTTACCATGCACGATTATGTTGCCG
AAGGTTTGCAGTCTAGTCATGTGAAGATTAAGTTTGACCATAAAGTAAAG
AAGTCGTTGATATGGAAATTCTTCGGGCCGGGCACCTATCACCCGTCCAA
TGCAATTCAAACAGAATTCAATTTCTTGTACCGCTGGCATCAATTTATCC
CGGAAGAGATCAAGGTCGTAAAGGATTTGCCAGTCTCGAATAACCAGGAC
ATGAAGGCCTTAGTTCCTGATATTGACAAGTACGACAACGACTCTCTCAC
CTTCCCGGACCCCGACTCGTGGTTCGGCGAGGACTGGAATGCCGTTAAAT
GGCTAACTGAAAAGGAGAACGGGTTGGAGAGGCTCATATTTTCAGCTGCA
TCGCAAAGAGCAGGTAAATTGACACTTCTTAACACAAACAAGTGGCTTGT
CAAGAATGTCATCAAGCCAGGAATGAAGAAGTGCAGGGAGTACGAATTAG
CATCATACAATGACTACCGCGAGCACTTTGGCTTTCGTCGAGTCAAAAAA
TTCGAACAAATAACGACCGATGCGGCAATCTTGGCCAAGTTGAAGCAAGT
TTACAAAGATGTGGATCAAGTCGAGTACTATCCTGGCATATTTGCCGAAA
ACAAGGACTTTGGAGGTGTTCATGGACCTTTCTTGGCAGCAATTGGCGTT
GGTATGACTTACTGTGGTATCTTCGCGAGCCGTCTGTTTGAAACTGATAT
TTTCAATGAAAAGACTTTAACGTCCAAAGGAGTAGAATTGGCAAACGAGA
TCAACTATATACGAGATGTGACTCGCATGCATACCAATCTCGGTGAAGCC
AAAGTGCATTTCACCGTTCCGAAGAATAACCCTGTGTAG
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protein sequence of Gvermi3218.t1

>Gvermi3218.t1 ID=Gvermi3218.t1|Name=Gvermi3218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=563bp
MVFNNFRNLITRCGGLGNTFSMWLRANFKPFWAALQNIPVIKDVLNQFYL
SALLKKFIKSVPRLPNHNLRNDFPSLYTVYDESRTTYSRLLPRQPEYTEG
LPDLDLASSCFLRENFVPETNRNLSLLIGFYAQWFSHQFFNTNPEDHTKV
NQPVGINLGQLYGSTAERMKSLRSGKLGLLKSSVRNGLEFPPIIPIPKDE
SGQNKIPIPGDEMFDIPFPMANSIPCFAAVHVIFFRRHQYVCRELAKWAS
ANGKTMSDEEMYQKAKIIVAINVLRLTMHDYVAEGLQSSHVKIKFDHKVK
KSLIWKFFGPGTYHPSNAIQTEFNFLYRWHQFIPEEIKVVKDLPVSNNQD
MKALVPDIDKYDNDSLTFPDPDSWFGEDWNAVKWLTEKENGLERLIFSAA
SQRAGKLTLLNTNKWLVKNVIKPGMKKCREYELASYNDYREHFGFRRVKK
FEQITTDAAILAKLKQVYKDVDQVEYYPGIFAENKDFGGVHGPFLAAIGV
GMTYCGIFASRLFETDIFNEKTLTSKGVELANEINYIRDVTRMHTNLGEA
KVHFTVPKNNPV*
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mRNA from alignment at ScGOVlb_41:654088..655776-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3218.t1 ID=Gvermi3218.t1|Name=Gvermi3218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at ScGOVlb_41:654088..655776- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTTCAACAACTTCCGCAATTTGATAACGCGCTGTGGCGGCCTTGG
AAATACGTTTTCAATGTGGCTTCGTGCCAACTTCAAGCCCTTTTGGGCTG
CGCTCCAGAACATTCCTGTGATCAAGGATGTTTTGAACCAATTCTACTTG
TCAGCCTTACTGAAGAAGTTCATCAAGAGCGTACCACGCCTTCCAAACCA
TAATTTGAGGAATGATTTCCCCTCATTGTACACTGTTTATGACGAGTCGC
GTACGACTTATTCTCGCTTACTTCCTCGTCAACCCGAGTACACCGAAGGT
CTTCCTGACCTAGATCTTGCTTCTTCCTGTTTTCTGCGGGAAAACTTTGT
TCCCGAAACCAACCGTAACCTCTCTCTTTTGATCGGATTTTATGCTCAGT
GGTTCTCTCACCAGTTCTTCAACACCAACCCCGAAGACCACACAAAGGTG
AATCAGCCCGTCGGAATCAATCTCGGTCAGTTGTATGGATCCACGGCCGA
GCGAATGAAATCCCTTCGCTCCGGTAAACTTGGTCTGCTCAAGTCATCAG
TAAGAAACGGATTAGAGTTCCCACCCATCATACCTATTCCCAAGGACGAG
AGTGGCCAGAATAAGATACCAATTCCAGGCGATGAGATGTTTGATATTCC
CTTCCCCATGGCTAACTCAATCCCATGTTTTGCCGCTGTGCATGTCATCT
TTTTCAGGAGACATCAATACGTTTGCCGTGAACTTGCCAAGTGGGCCAGC
GCAAATGGCAAGACTATGAGCGATGAAGAGATGTATCAGAAGGCCAAGAT
CATTGTGGCTATCAATGTCCTTCGTCTTACCATGCACGATTATGTTGCCG
AAGGTTTGCAGTCTAGTCATGTGAAGATTAAGTTTGACCATAAAGTAAAG
AAGTCGTTGATATGGAAATTCTTCGGGCCGGGCACCTATCACCCGTCCAA
TGCAATTCAAACAGAATTCAATTTCTTGTACCGCTGGCATCAATTTATCC
CGGAAGAGATCAAGGTCGTAAAGGATTTGCCAGTCTCGAATAACCAGGAC
ATGAAGGCCTTAGTTCCTGATATTGACAAGTACGACAACGACTCTCTCAC
CTTCCCGGACCCCGACTCGTGGTTCGGCGAGGACTGGAATGCCGTTAAAT
GGCTAACTGAAAAGGAGAACGGGTTGGAGAGGCTCATATTTTCAGCTGCA
TCGCAAAGAGCAGGTAAATTGACACTTCTTAACACAAACAAGTGGCTTGT
CAAGAATGTCATCAAGCCAGGAATGAAGAAGTGCAGGGAGTACGAATTAG
CATCATACAATGACTACCGCGAGCACTTTGGCTTTCGTCGAGTCAAAAAA
TTCGAACAAATAACGACCGATGCGGCAATCTTGGCCAAGTTGAAGCAAGT
TTACAAAGATGTGGATCAAGTCGAGTACTATCCTGGCATATTTGCCGAAA
ACAAGGACTTTGGAGGTGTTCATGGACCTTTCTTGGCAGCAATTGGCGTT
GGTATGACTTACTGTGGTATCTTCGCGAGCCGTCTGTTTGAAACTGATAT
TTTCAATGAAAAGACTTTAACGTCCAAAGGAGTAGAATTGGCAAACGAGA
TCAACTATATACGAGATGTGACTCGCATGCATACCAATCTCGGTGAAGCC
AAAGTGCATTTCACCGTTCCGAAGAATAACCCTGTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:654088..655776-

>Gvermi3218.t1 ID=Gvermi3218.t1|Name=Gvermi3218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1689bp|location=Sequence derived from alignment at ScGOVlb_41:654088..655776- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTTCAACAACTTCCGCAATTTGATAACGCGCTGTGGCGGCCTTGG
AAATACGTTTTCAATGTGGCTTCGTGCCAACTTCAAGCCCTTTTGGGCTG
CGCTCCAGAACATTCCTGTGATCAAGGATGTTTTGAACCAATTCTACTTG
TCAGCCTTACTGAAGAAGTTCATCAAGAGCGTACCACGCCTTCCAAACCA
TAATTTGAGGAATGATTTCCCCTCATTGTACACTGTTTATGACGAGTCGC
GTACGACTTATTCTCGCTTACTTCCTCGTCAACCCGAGTACACCGAAGGT
CTTCCTGACCTAGATCTTGCTTCTTCCTGTTTTCTGCGGGAAAACTTTGT
TCCCGAAACCAACCGTAACCTCTCTCTTTTGATCGGATTTTATGCTCAGT
GGTTCTCTCACCAGTTCTTCAACACCAACCCCGAAGACCACACAAAGGTG
AATCAGCCCGTCGGAATCAATCTCGGTCAGTTGTATGGATCCACGGCCGA
GCGAATGAAATCCCTTCGCTCCGGTAAACTTGGTCTGCTCAAGTCATCAG
TAAGAAACGGATTAGAGTTCCCACCCATCATACCTATTCCCAAGGACGAG
AGTGGCCAGAATAAGATACCAATTCCAGGCGATGAGATGTTTGATATTCC
CTTCCCCATGGCTAACTCAATCCCATGTTTTGCCGCTGTGCATGTCATCT
TTTTCAGGAGACATCAATACGTTTGCCGTGAACTTGCCAAGTGGGCCAGC
GCAAATGGCAAGACTATGAGCGATGAAGAGATGTATCAGAAGGCCAAGAT
CATTGTGGCTATCAATGTCCTTCGTCTTACCATGCACGATTATGTTGCCG
AAGGTTTGCAGTCTAGTCATGTGAAGATTAAGTTTGACCATAAAGTAAAG
AAGTCGTTGATATGGAAATTCTTCGGGCCGGGCACCTATCACCCGTCCAA
TGCAATTCAAACAGAATTCAATTTCTTGTACCGCTGGCATCAATTTATCC
CGGAAGAGATCAAGGTCGTAAAGGATTTGCCAGTCTCGAATAACCAGGAC
ATGAAGGCCTTAGTTCCTGATATTGACAAGTACGACAACGACTCTCTCAC
CTTCCCGGACCCCGACTCGTGGTTCGGCGAGGACTGGAATGCCGTTAAAT
GGCTAACTGAAAAGGAGAACGGGTTGGAGAGGCTCATATTTTCAGCTGCA
TCGCAAAGAGCAGGTAAATTGACACTTCTTAACACAAACAAGTGGCTTGT
CAAGAATGTCATCAAGCCAGGAATGAAGAAGTGCAGGGAGTACGAATTAG
CATCATACAATGACTACCGCGAGCACTTTGGCTTTCGTCGAGTCAAAAAA
TTCGAACAAATAACGACCGATGCGGCAATCTTGGCCAAGTTGAAGCAAGT
TTACAAAGATGTGGATCAAGTCGAGTACTATCCTGGCATATTTGCCGAAA
ACAAGGACTTTGGAGGTGTTCATGGACCTTTCTTGGCAGCAATTGGCGTT
GGTATGACTTACTGTGGTATCTTCGCGAGCCGTCTGTTTGAAACTGATAT
TTTCAATGAAAAGACTTTAACGTCCAAAGGAGTAGAATTGGCAAACGAGA
TCAACTATATACGAGATGTGACTCGCATGCATACCAATCTCGGTGAAGCC
AAAGTGCATTTCACCGTTCCGAAGAATAACCCTGTGTAG
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