Gvermi3700.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3700.t1
Unique NameGvermi3700.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4036595..4037045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5145.XP_001910620.1
Preferred nameRPC10
PFAMsDNA_RNApol_7kD
Max annot lvl4751|Fungi
KEGG rclassRC02795
KEGG koko:K03009
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000428,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0006139,GO:0006351,GO:0006360,GO:0006366,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue1.06e-09
EggNOG OGsCOG1996@1|root,KOG3507@2759|Eukaryota,3A8HD@33154|Opisthokonta,3P6TW@4751|Fungi,3QYX1@4890|Ascomycota,21BXQ@147550|Sordariomycetes,3U9XS@5139|Sordariales
DescriptionDNA directed RNA polymerase, 7 kDa subunit
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3700Gvermi3700Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4036595..4037045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3700.t1Gvermi3700.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4036595..4037045 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3700.t1.start1Gvermi3700.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4036595..4036597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3700.t1.CDS1Gvermi3700.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4036595..4036849 +
Gvermi3700.t1.CDS2Gvermi3700.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4036929..4037045 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3700.t1.exon1Gvermi3700.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4036595..4036849 +
Gvermi3700.t1.exon2Gvermi3700.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4036929..4037045 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3700.t1.intron1Gvermi3700.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 4036850..4036928 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3700.t1.stop1Gvermi3700.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4037043..4037045 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3700.t1 ID=Gvermi3700.t1|Name=Gvermi3700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=124bp
MSPRRSFRTGYKVASYAYRNSPFATQTCCLHALRKLLCCVKYCTFKSRSD
SSGSESRLPVSYQSLDCLLQVKQLSSSNEMQYRCGGCGQIIDLAAGAQVK
CNSCGSRILWKLRTKKVVQYEAR*
back to top

spliced messenger RNA

>Gvermi3700.t1 ID=Gvermi3700.t1|Name=Gvermi3700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp|location=Sequence derived from alignment at ScGOVlb_41:4036595..4037045+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCCACGCCGTTCATTTCGCACAGGCTACAAGGTTGCGTCTTATGC
GTACCGAAATTCGCCTTTTGCCACCCAGACTTGCTGTCTCCATGCCTTGC
GAAAACTTTTGTGTTGCGTCAAATATTGTACCTTCAAGTCGCGAAGCGAT
TCATCGGGGTCCGAATCTCGTCTCCCTGTTTCCTATCAATCTCTTGATTG
TTTACTACAAGTGAAACAACTTAGCTCATCGAACGAAATGCAGTATCGCT
GTGGGGGATGTGGACAAATCATTGATCTTGCGGCAGGCGCCCAAGTCAAA
TGCAACTCGTGCGGAAGCCGCATTCTTTGGAAGTTACGCACGAAAAAGGT
CGTTCAGTACGAAGCACGCTGA
back to top

protein sequence of Gvermi3700.t1

>Gvermi3700.t1 ID=Gvermi3700.t1|Name=Gvermi3700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=124bp
MSPRRSFRTGYKVASYAYRNSPFATQTCCLHALRKLLCCVKYCTFKSRSD
SSGSESRLPVSYQSLDCLLQVKQLSSSNEMQYRCGGCGQIIDLAAGAQVK
CNSCGSRILWKLRTKKVVQYEAR*
back to top

mRNA from alignment at ScGOVlb_41:4036595..4037045+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3700.t1 ID=Gvermi3700.t1|Name=Gvermi3700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=451bp|location=Sequence derived from alignment at ScGOVlb_41:4036595..4037045+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCCACGCCGTTCATTTCGCACAGGCTACAAGGTTGCGTCTTATGC
GTACCGAAATTCGCCTTTTGCCACCCAGACTTGCTGTCTCCATGCCTTGC
GAAAACTTTTGTGTTGCGTCAAATATTGTACCTTCAAGTCGCGAAGCGAT
TCATCGGGGTCCGAATCTCGTCTCCCTGTTTCCTATCAATCTCTTGATTG
TTTACTACAAGTGAAACAACTTAGCTCATCGAACGAAATGCAGTATCGCT
GTGGGGTAGGTATTCAAGAATGATTGGGAGTTGGATATCTTTTCGTGTCA
ATTACTAACTTGTCATGTGTTGAATTTGTAACAGGGATGTGGACAAATCA
TTGATCTTGCGGCAGGCGCCCAAGTCAAATGCAACTCGTGCGGAAGCCGC
ATTCTTTGGAAGTTACGCACGAAAAAGGTCGTTCAGTACGAAGCACGCTG
A
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:4036595..4037045+

>Gvermi3700.t1 ID=Gvermi3700.t1|Name=Gvermi3700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=372bp|location=Sequence derived from alignment at ScGOVlb_41:4036595..4037045+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCCACGCCGTTCATTTCGCACAGGCTACAAGGTTGCGTCTTATGC
GTACCGAAATTCGCCTTTTGCCACCCAGACTTGCTGTCTCCATGCCTTGC
GAAAACTTTTGTGTTGCGTCAAATATTGTACCTTCAAGTCGCGAAGCGAT
TCATCGGGGTCCGAATCTCGTCTCCCTGTTTCCTATCAATCTCTTGATTG
TTTACTACAAGTGAAACAACTTAGCTCATCGAACGAAATGCAGTATCGCT
GTGGGGGATGTGGACAAATCATTGATCTTGCGGCAGGCGCCCAAGTCAAA
TGCAACTCGTGCGGAAGCCGCATTCTTTGGAAGTTACGCACGAAAAAGGT
CGTTCAGTACGAAGCACGCTGA
back to top