Gvermi3457.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3457.t1
Unique NameGvermi3457.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length525
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1715266..1716840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121921.KB898707_gene779
PFAMsBig_2,UnbV_ASPIC,VCBS
Max annot lvl1236|Gammaproteobacteria
Evalue5.44e-48
EggNOG OGsCOG2931@1|root,COG5492@1|root,COG2931@2|Bacteria,COG5492@2|Bacteria,1R7ZV@1224|Proteobacteria,1RPUG@1236|Gammaproteobacteria
DescriptionASPIC and UnbV
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3457Gvermi3457Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1715266..1716840 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3457.t1.stop1Gvermi3457.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1715266..1715268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3457.t1.CDS1Gvermi3457.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1715266..1716840 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3457.t1.exon1Gvermi3457.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1715266..1716840 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3457.t1.start1Gvermi3457.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1716838..1716840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3457.t1Gvermi3457.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1715266..1716840 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3457.t1 ID=Gvermi3457.t1|Name=Gvermi3457.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=525bp
MSPRVSAACDVSPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD
VTKQVGIDLRSGKVKKYGAPSVVDLDRDGLPDLLFCHHDSTFTELYYNNG
DGTFSKQQWGVFNDLHGFSSFPVSPWRKAMRFSLSVGGNYGRNPANPLMF
EVNPFNRSVIEVTQQAGITQRGGRGRTAVYLDLSMGARPFWPDVIYTNAW
ANKGIHQFAYENVGQQQFALRTLKGGFEWTRNPLAVVTDIDNDGVMEVLS
YYLFTVWKLTAPFNMVDISGRVLPPGMAREGVVAVAEIDFDGDGDFDLYL
ARDRIGFWMPDTVYHDILLENRDGKYFDVSEQAGIPRATKSRGVTTGDFN
NDGLIDLHVSQYQGEDIVLLNNGNGTFRRVNGLTSHAADTRGDMSVAVDY
DMDGKVDLVMSEGDHDNTAIGGHYRVFNNVMQNSGNYVHVRVGNPSDRSC
TPLNAVVTVKSGELSMTRRVGSPGTSVSHSYMETLHFGLGGRSTVDSITV
RYTNGKVERAENVRAGSMVLVGVL*
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spliced messenger RNA

>Gvermi3457.t1 ID=Gvermi3457.t1|Name=Gvermi3457.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1575bp|location=Sequence derived from alignment at ScGOVlb_41:1715266..1716840- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGCGGGTGTCTGCCGCGTGCGACGTGAGCCCGTTCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTGAC
GTCACCAAGCAGGTAGGAATCGATCTTCGCTCCGGGAAAGTGAAGAAATA
CGGCGCCCCGTCCGTCGTCGACCTCGACCGCGACGGGCTCCCTGATCTCC
TCTTTTGTCACCATGACTCCACCTTCACCGAGCTCTACTACAACAACGGA
GACGGCACCTTTTCCAAGCAGCAGTGGGGTGTGTTTAACGACCTGCACGG
GTTTTCCTCCTTCCCCGTCTCCCCATGGCGAAAAGCCATGCGCTTCTCGC
TCTCGGTCGGCGGCAACTATGGGCGCAACCCGGCGAACCCGCTCATGTTC
GAGGTCAACCCGTTCAACCGCTCCGTCATAGAGGTCACTCAGCAAGCGGG
CATCACCCAACGTGGCGGCCGCGGCCGCACCGCCGTGTACCTCGACCTCT
CCATGGGCGCGCGTCCTTTCTGGCCCGACGTCATCTACACCAACGCCTGG
GCGAACAAAGGCATCCATCAGTTTGCGTATGAGAACGTCGGGCAGCAGCA
ATTCGCGCTCCGCACATTGAAGGGCGGCTTTGAGTGGACCCGAAACCCGC
TTGCCGTTGTCACTGACATCGACAACGACGGCGTCATGGAGGTGCTGAGC
TACTACCTGTTCACCGTGTGGAAGCTCACGGCCCCGTTCAACATGGTCGA
CATTTCTGGCCGCGTGCTGCCGCCGGGCATGGCGCGCGAGGGCGTCGTGG
CGGTGGCGGAGATCGACTTTGACGGCGACGGCGACTTTGACCTGTACCTC
GCCAGAGACAGGATTGGCTTCTGGATGCCCGACACCGTGTACCACGACAT
CCTGCTGGAGAACCGCGACGGCAAATACTTTGACGTCAGTGAGCAGGCTG
GCATTCCTCGCGCAACCAAGTCTCGCGGTGTCACCACCGGCGACTTCAAC
AACGACGGCCTCATTGACCTTCACGTGTCGCAGTACCAGGGCGAGGACAT
TGTTCTGCTCAACAACGGCAACGGGACGTTCAGGCGTGTGAACGGGCTCA
CGTCGCACGCGGCAGACACCCGCGGCGACATGTCGGTGGCCGTCGACTAC
GACATGGACGGGAAGGTGGACCTGGTCATGAGCGAGGGCGACCACGACAA
CACGGCCATCGGCGGGCACTACCGCGTGTTCAACAACGTGATGCAAAACA
GTGGCAACTACGTGCACGTACGCGTTGGAAACCCGTCCGACAGAAGCTGT
ACGCCGCTGAACGCGGTTGTTACGGTTAAATCGGGTGAACTGAGCATGAC
GCGGCGCGTGGGATCGCCCGGCACGTCGGTGTCGCACTCGTACATGGAGA
CGTTGCACTTTGGGCTCGGCGGCCGGTCCACGGTGGATTCCATCACGGTG
CGGTATACAAACGGGAAGGTTGAGAGAGCTGAGAACGTGCGGGCCGGCAG
CATGGTGTTGGTGGGCGTGTTGTAG
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protein sequence of Gvermi3457.t1

>Gvermi3457.t1 ID=Gvermi3457.t1|Name=Gvermi3457.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=525bp
MSPRVSAACDVSPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD
VTKQVGIDLRSGKVKKYGAPSVVDLDRDGLPDLLFCHHDSTFTELYYNNG
DGTFSKQQWGVFNDLHGFSSFPVSPWRKAMRFSLSVGGNYGRNPANPLMF
EVNPFNRSVIEVTQQAGITQRGGRGRTAVYLDLSMGARPFWPDVIYTNAW
ANKGIHQFAYENVGQQQFALRTLKGGFEWTRNPLAVVTDIDNDGVMEVLS
YYLFTVWKLTAPFNMVDISGRVLPPGMAREGVVAVAEIDFDGDGDFDLYL
ARDRIGFWMPDTVYHDILLENRDGKYFDVSEQAGIPRATKSRGVTTGDFN
NDGLIDLHVSQYQGEDIVLLNNGNGTFRRVNGLTSHAADTRGDMSVAVDY
DMDGKVDLVMSEGDHDNTAIGGHYRVFNNVMQNSGNYVHVRVGNPSDRSC
TPLNAVVTVKSGELSMTRRVGSPGTSVSHSYMETLHFGLGGRSTVDSITV
RYTNGKVERAENVRAGSMVLVGVL*
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mRNA from alignment at ScGOVlb_41:1715266..1716840-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3457.t1 ID=Gvermi3457.t1|Name=Gvermi3457.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1575bp|location=Sequence derived from alignment at ScGOVlb_41:1715266..1716840- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCGCGGGTGTCTGCCGCGTGCGACGTGAGCCCGTTCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTGAC
GTCACCAAGCAGGTAGGAATCGATCTTCGCTCCGGGAAAGTGAAGAAATA
CGGCGCCCCGTCCGTCGTCGACCTCGACCGCGACGGGCTCCCTGATCTCC
TCTTTTGTCACCATGACTCCACCTTCACCGAGCTCTACTACAACAACGGA
GACGGCACCTTTTCCAAGCAGCAGTGGGGTGTGTTTAACGACCTGCACGG
GTTTTCCTCCTTCCCCGTCTCCCCATGGCGAAAAGCCATGCGCTTCTCGC
TCTCGGTCGGCGGCAACTATGGGCGCAACCCGGCGAACCCGCTCATGTTC
GAGGTCAACCCGTTCAACCGCTCCGTCATAGAGGTCACTCAGCAAGCGGG
CATCACCCAACGTGGCGGCCGCGGCCGCACCGCCGTGTACCTCGACCTCT
CCATGGGCGCGCGTCCTTTCTGGCCCGACGTCATCTACACCAACGCCTGG
GCGAACAAAGGCATCCATCAGTTTGCGTATGAGAACGTCGGGCAGCAGCA
ATTCGCGCTCCGCACATTGAAGGGCGGCTTTGAGTGGACCCGAAACCCGC
TTGCCGTTGTCACTGACATCGACAACGACGGCGTCATGGAGGTGCTGAGC
TACTACCTGTTCACCGTGTGGAAGCTCACGGCCCCGTTCAACATGGTCGA
CATTTCTGGCCGCGTGCTGCCGCCGGGCATGGCGCGCGAGGGCGTCGTGG
CGGTGGCGGAGATCGACTTTGACGGCGACGGCGACTTTGACCTGTACCTC
GCCAGAGACAGGATTGGCTTCTGGATGCCCGACACCGTGTACCACGACAT
CCTGCTGGAGAACCGCGACGGCAAATACTTTGACGTCAGTGAGCAGGCTG
GCATTCCTCGCGCAACCAAGTCTCGCGGTGTCACCACCGGCGACTTCAAC
AACGACGGCCTCATTGACCTTCACGTGTCGCAGTACCAGGGCGAGGACAT
TGTTCTGCTCAACAACGGCAACGGGACGTTCAGGCGTGTGAACGGGCTCA
CGTCGCACGCGGCAGACACCCGCGGCGACATGTCGGTGGCCGTCGACTAC
GACATGGACGGGAAGGTGGACCTGGTCATGAGCGAGGGCGACCACGACAA
CACGGCCATCGGCGGGCACTACCGCGTGTTCAACAACGTGATGCAAAACA
GTGGCAACTACGTGCACGTACGCGTTGGAAACCCGTCCGACAGAAGCTGT
ACGCCGCTGAACGCGGTTGTTACGGTTAAATCGGGTGAACTGAGCATGAC
GCGGCGCGTGGGATCGCCCGGCACGTCGGTGTCGCACTCGTACATGGAGA
CGTTGCACTTTGGGCTCGGCGGCCGGTCCACGGTGGATTCCATCACGGTG
CGGTATACAAACGGGAAGGTTGAGAGAGCTGAGAACGTGCGGGCCGGCAG
CATGGTGTTGGTGGGCGTGTTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:1715266..1716840-

>Gvermi3457.t1 ID=Gvermi3457.t1|Name=Gvermi3457.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1575bp|location=Sequence derived from alignment at ScGOVlb_41:1715266..1716840- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCGCGGGTGTCTGCCGCGTGCGACGTGAGCCCGTTCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTGAC
GTCACCAAGCAGGTAGGAATCGATCTTCGCTCCGGGAAAGTGAAGAAATA
CGGCGCCCCGTCCGTCGTCGACCTCGACCGCGACGGGCTCCCTGATCTCC
TCTTTTGTCACCATGACTCCACCTTCACCGAGCTCTACTACAACAACGGA
GACGGCACCTTTTCCAAGCAGCAGTGGGGTGTGTTTAACGACCTGCACGG
GTTTTCCTCCTTCCCCGTCTCCCCATGGCGAAAAGCCATGCGCTTCTCGC
TCTCGGTCGGCGGCAACTATGGGCGCAACCCGGCGAACCCGCTCATGTTC
GAGGTCAACCCGTTCAACCGCTCCGTCATAGAGGTCACTCAGCAAGCGGG
CATCACCCAACGTGGCGGCCGCGGCCGCACCGCCGTGTACCTCGACCTCT
CCATGGGCGCGCGTCCTTTCTGGCCCGACGTCATCTACACCAACGCCTGG
GCGAACAAAGGCATCCATCAGTTTGCGTATGAGAACGTCGGGCAGCAGCA
ATTCGCGCTCCGCACATTGAAGGGCGGCTTTGAGTGGACCCGAAACCCGC
TTGCCGTTGTCACTGACATCGACAACGACGGCGTCATGGAGGTGCTGAGC
TACTACCTGTTCACCGTGTGGAAGCTCACGGCCCCGTTCAACATGGTCGA
CATTTCTGGCCGCGTGCTGCCGCCGGGCATGGCGCGCGAGGGCGTCGTGG
CGGTGGCGGAGATCGACTTTGACGGCGACGGCGACTTTGACCTGTACCTC
GCCAGAGACAGGATTGGCTTCTGGATGCCCGACACCGTGTACCACGACAT
CCTGCTGGAGAACCGCGACGGCAAATACTTTGACGTCAGTGAGCAGGCTG
GCATTCCTCGCGCAACCAAGTCTCGCGGTGTCACCACCGGCGACTTCAAC
AACGACGGCCTCATTGACCTTCACGTGTCGCAGTACCAGGGCGAGGACAT
TGTTCTGCTCAACAACGGCAACGGGACGTTCAGGCGTGTGAACGGGCTCA
CGTCGCACGCGGCAGACACCCGCGGCGACATGTCGGTGGCCGTCGACTAC
GACATGGACGGGAAGGTGGACCTGGTCATGAGCGAGGGCGACCACGACAA
CACGGCCATCGGCGGGCACTACCGCGTGTTCAACAACGTGATGCAAAACA
GTGGCAACTACGTGCACGTACGCGTTGGAAACCCGTCCGACAGAAGCTGT
ACGCCGCTGAACGCGGTTGTTACGGTTAAATCGGGTGAACTGAGCATGAC
GCGGCGCGTGGGATCGCCCGGCACGTCGGTGTCGCACTCGTACATGGAGA
CGTTGCACTTTGGGCTCGGCGGCCGGTCCACGGTGGATTCCATCACGGTG
CGGTATACAAACGGGAAGGTTGAGAGAGCTGAGAACGTGCGGGCCGGCAG
CATGGTGTTGGTGGGCGTGTTGTAG
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