Gvermi1276.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi1276.t1
Unique Name	Gvermi1276.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	407

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3844	contig	ScGOVlb_3844:2..1221 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122138.AQUZ01000008_gene3682
PFAMs	DUF11
Max annot lvl	201174\|Actinobacteria
Evalue	4.95e-38
EggNOG OGs	COG1361@1\|root,COG1361@2\|Bacteria,2I8F1@201174\|Actinobacteria,4DVAH@85009\|Propionibacteriales
Description	Domain of unknown function DUF11
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi1276	Gvermi1276	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3844 2..1221 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1276.t1.CDS1	Gvermi1276.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3844 2..1221 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1276.t1.exon1	Gvermi1276.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3844 2..1221 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1276.t1	Gvermi1276.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3844 2..1221 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3844:2..1221+
coding sequence from alignment at ScGOVlb_3844:2..1221+

mRNA sequence

>Gvermi1276.t1 ID=Gvermi1276.t1|Name=Gvermi1276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=407bp
XSSLLTCRKTIDDEDCVVAGSNAQRTYTLTVTNLGPSVARDVVVTERFPF
DLNLVPSGVPAVCQPVQVPGSTNYTCSIGDLGRGDVRTLLFTFTVDASHP
PGIVENYARVDSPTPDPDLCNNEAKLCSLICVESDLSVSKTDGVVEVTAG
DGVTYTYTVSGFNAGPSDAPTVEFSDVWPEGFTRGDINAPGMSCETNSVG
FVCRKADGLARGQGAVFNVTYTVPACLDACEACNTVTISSPDSPDPNSAN
NVATDCNRVRTEADVEICKTDGVDHVTPGDGITHEYSIVVTNNGPSCAQK
VRVVDHFPDAAQRIGDAVPSQGACTDADGASSGDFTCHVLTVEPGETVTI
RANYTVPASARTCSITNTATVSTVTFDPRLCNNDAKDINALVENSLMSII
KTDGIET

spliced messenger RNA

>Gvermi1276.t1 ID=Gvermi1276.t1|Name=Gvermi1276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1220bp|location=Sequence derived from alignment at ScGOVlb_3844:2..1221+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TCTCGTCTCTTCTCACATGCCGCAAGACCATTGACGACGAGGACTGCGTC
GTGGCCGGCTCCAACGCGCAGCGCACCTACACGCTGACCGTGACCAACCT
GGGTCCCTCTGTGGCGCGCGACGTGGTCGTCACCGAGCGCTTCCCCTTTG
ACCTCAACCTGGTCCCCAGCGGCGTGCCCGCTGTGTGCCAGCCCGTGCAG
GTGCCCGGATCCACCAACTACACGTGCTCCATCGGCGACCTGGGCCGCGG
CGACGTGCGCACGCTCCTGTTCACCTTCACCGTGGACGCCTCGCACCCGC
CGGGCATCGTGGAGAACTACGCGCGCGTCGACAGCCCCACGCCCGACCCC
GACCTGTGCAACAACGAGGCCAAGCTGTGCTCGCTCATCTGCGTGGAGAG
CGACCTGTCCGTGTCCAAGACGGACGGCGTGGTGGAGGTGACGGCCGGCG
ACGGCGTCACCTACACTTACACCGTGAGCGGCTTCAACGCGGGTCCCAGC
GACGCGCCCACCGTGGAGTTCTCGGACGTGTGGCCCGAGGGCTTCACTCG
CGGCGACATCAACGCCCCCGGCATGTCGTGCGAGACCAACTCGGTCGGCT
TTGTGTGCCGCAAGGCTGACGGCCTGGCCCGCGGCCAGGGTGCCGTGTTC
AACGTGACCTACACCGTGCCCGCGTGCCTGGACGCCTGCGAGGCCTGCAA
CACCGTGACCATCTCGAGCCCCGACTCGCCCGATCCCAACAGCGCCAACA
ACGTGGCCACGGACTGCAACCGCGTGCGCACCGAGGCCGATGTGGAGATC
TGCAAGACGGACGGCGTGGATCACGTGACCCCCGGCGACGGCATCACCCA
CGAGTACTCCATTGTGGTCACCAACAACGGCCCCAGCTGCGCCCAGAAGG
TGCGCGTCGTGGACCACTTCCCCGACGCTGCCCAGCGCATCGGCGACGCC
GTGCCCTCGCAGGGCGCCTGCACTGACGCCGATGGTGCCTCCAGCGGCGA
CTTTACGTGCCACGTGCTGACGGTGGAGCCCGGAGAGACGGTCACCATCC
GCGCCAACTACACTGTGCCCGCGTCCGCGCGCACGTGCTCCATCACCAAC
ACGGCCACCGTGTCCACCGTCACCTTTGACCCGCGCCTGTGCAACAACGA
CGCCAAGGACATCAACGCCCTGGTGGAGAACAGCCTCATGTCCATCATCA
AGACGGACGGCATCGAGACC

protein sequence of Gvermi1276.t1

>Gvermi1276.t1 ID=Gvermi1276.t1|Name=Gvermi1276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
XSSLLTCRKTIDDEDCVVAGSNAQRTYTLTVTNLGPSVARDVVVTERFPF
DLNLVPSGVPAVCQPVQVPGSTNYTCSIGDLGRGDVRTLLFTFTVDASHP
PGIVENYARVDSPTPDPDLCNNEAKLCSLICVESDLSVSKTDGVVEVTAG
DGVTYTYTVSGFNAGPSDAPTVEFSDVWPEGFTRGDINAPGMSCETNSVG
FVCRKADGLARGQGAVFNVTYTVPACLDACEACNTVTISSPDSPDPNSAN
NVATDCNRVRTEADVEICKTDGVDHVTPGDGITHEYSIVVTNNGPSCAQK
VRVVDHFPDAAQRIGDAVPSQGACTDADGASSGDFTCHVLTVEPGETVTI
RANYTVPASARTCSITNTATVSTVTFDPRLCNNDAKDINALVENSLMSII
KTDGIET

mRNA from alignment at ScGOVlb_3844:2..1221+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi1276.t1 ID=Gvermi1276.t1|Name=Gvermi1276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1220bp|location=Sequence derived from alignment at ScGOVlb_3844:2..1221+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TCTCGTCTCTTCTCACATGCCGCAAGACCATTGACGACGAGGACTGCGTC
GTGGCCGGCTCCAACGCGCAGCGCACCTACACGCTGACCGTGACCAACCT
GGGTCCCTCTGTGGCGCGCGACGTGGTCGTCACCGAGCGCTTCCCCTTTG
ACCTCAACCTGGTCCCCAGCGGCGTGCCCGCTGTGTGCCAGCCCGTGCAG
GTGCCCGGATCCACCAACTACACGTGCTCCATCGGCGACCTGGGCCGCGG
CGACGTGCGCACGCTCCTGTTCACCTTCACCGTGGACGCCTCGCACCCGC
CGGGCATCGTGGAGAACTACGCGCGCGTCGACAGCCCCACGCCCGACCCC
GACCTGTGCAACAACGAGGCCAAGCTGTGCTCGCTCATCTGCGTGGAGAG
CGACCTGTCCGTGTCCAAGACGGACGGCGTGGTGGAGGTGACGGCCGGCG
ACGGCGTCACCTACACTTACACCGTGAGCGGCTTCAACGCGGGTCCCAGC
GACGCGCCCACCGTGGAGTTCTCGGACGTGTGGCCCGAGGGCTTCACTCG
CGGCGACATCAACGCCCCCGGCATGTCGTGCGAGACCAACTCGGTCGGCT
TTGTGTGCCGCAAGGCTGACGGCCTGGCCCGCGGCCAGGGTGCCGTGTTC
AACGTGACCTACACCGTGCCCGCGTGCCTGGACGCCTGCGAGGCCTGCAA
CACCGTGACCATCTCGAGCCCCGACTCGCCCGATCCCAACAGCGCCAACA
ACGTGGCCACGGACTGCAACCGCGTGCGCACCGAGGCCGATGTGGAGATC
TGCAAGACGGACGGCGTGGATCACGTGACCCCCGGCGACGGCATCACCCA
CGAGTACTCCATTGTGGTCACCAACAACGGCCCCAGCTGCGCCCAGAAGG
TGCGCGTCGTGGACCACTTCCCCGACGCTGCCCAGCGCATCGGCGACGCC
GTGCCCTCGCAGGGCGCCTGCACTGACGCCGATGGTGCCTCCAGCGGCGA
CTTTACGTGCCACGTGCTGACGGTGGAGCCCGGAGAGACGGTCACCATCC
GCGCCAACTACACTGTGCCCGCGTCCGCGCGCACGTGCTCCATCACCAAC
ACGGCCACCGTGTCCACCGTCACCTTTGACCCGCGCCTGTGCAACAACGA
CGCCAAGGACATCAACGCCCTGGTGGAGAACAGCCTCATGTCCATCATCA
AGACGGACGGCATCGAGACC

Coding sequence (CDS) from alignment at ScGOVlb_3844:2..1221+

>Gvermi1276.t1 ID=Gvermi1276.t1|Name=Gvermi1276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1220bp|location=Sequence derived from alignment at ScGOVlb_3844:2..1221+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TCTCGTCTCTTCTCACATGCCGCAAGACCATTGACGACGAGGACTGCGTC
GTGGCCGGCTCCAACGCGCAGCGCACCTACACGCTGACCGTGACCAACCT
GGGTCCCTCTGTGGCGCGCGACGTGGTCGTCACCGAGCGCTTCCCCTTTG
ACCTCAACCTGGTCCCCAGCGGCGTGCCCGCTGTGTGCCAGCCCGTGCAG
GTGCCCGGATCCACCAACTACACGTGCTCCATCGGCGACCTGGGCCGCGG
CGACGTGCGCACGCTCCTGTTCACCTTCACCGTGGACGCCTCGCACCCGC
CGGGCATCGTGGAGAACTACGCGCGCGTCGACAGCCCCACGCCCGACCCC
GACCTGTGCAACAACGAGGCCAAGCTGTGCTCGCTCATCTGCGTGGAGAG
CGACCTGTCCGTGTCCAAGACGGACGGCGTGGTGGAGGTGACGGCCGGCG
ACGGCGTCACCTACACTTACACCGTGAGCGGCTTCAACGCGGGTCCCAGC
GACGCGCCCACCGTGGAGTTCTCGGACGTGTGGCCCGAGGGCTTCACTCG
CGGCGACATCAACGCCCCCGGCATGTCGTGCGAGACCAACTCGGTCGGCT
TTGTGTGCCGCAAGGCTGACGGCCTGGCCCGCGGCCAGGGTGCCGTGTTC
AACGTGACCTACACCGTGCCCGCGTGCCTGGACGCCTGCGAGGCCTGCAA
CACCGTGACCATCTCGAGCCCCGACTCGCCCGATCCCAACAGCGCCAACA
ACGTGGCCACGGACTGCAACCGCGTGCGCACCGAGGCCGATGTGGAGATC
TGCAAGACGGACGGCGTGGATCACGTGACCCCCGGCGACGGCATCACCCA
CGAGTACTCCATTGTGGTCACCAACAACGGCCCCAGCTGCGCCCAGAAGG
TGCGCGTCGTGGACCACTTCCCCGACGCTGCCCAGCGCATCGGCGACGCC
GTGCCCTCGCAGGGCGCCTGCACTGACGCCGATGGTGCCTCCAGCGGCGA
CTTTACGTGCCACGTGCTGACGGTGGAGCCCGGAGAGACGGTCACCATCC
GCGCCAACTACACTGTGCCCGCGTCCGCGCGCACGTGCTCCATCACCAAC
ACGGCCACCGTGTCCACCGTCACCTTTGACCCGCGCCTGTGCAACAACGA
CGCCAAGGACATCAACGCCCTGGTGGAGAACAGCCTCATGTCCATCATCA
AGACGGACGGCATCGAGACC