Gvermi14164.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi14164.t1
Unique Name	Gvermi14164.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	597

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_359	contig	ScGOVlb_359:801..2591 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi14164	Gvermi14164	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_359 801..2591 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi14164.t1.start1	Gvermi14164.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_359 801..803 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi14164.t1.CDS1	Gvermi14164.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_359 801..2591 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi14164.t1.exon1	Gvermi14164.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_359 801..2591 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi14164.t1.stop1	Gvermi14164.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_359 2589..2591 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi14164.t1	Gvermi14164.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_359 801..2591 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_359:801..2591+
coding sequence from alignment at ScGOVlb_359:801..2591+

mRNA sequence

>Gvermi14164.t1 ID=Gvermi14164.t1|Name=Gvermi14164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp
MAQGRDLEYRQMVLRYLESTPLPDVPGVLDVEETEEQRRIRRTVRGQNAI
EYKEKLEKKDEAIKAASALRAKIVFALLQRNSPFKKQERAAFLTWFVYTA
FERVKQDRVALMEELGKVRRPPTKEEQQYRRGKLRRELDDFIAKKRTLER
EQIAIERSSEFQRALKQERKMRDSLEAAKRAVKLYKRRNDPATTAEYEEG
LLWLEEQQENASQALRESKLQQRRMIDQVSKRLAQVAEKVLQAEGRLIDY
ETRMKDASRPSDNESIVLGNIKEYIANQMRVDGNKAEKLDWIMTQFDLYV
RERNVQLLNDKIEAELEKMQSERKGRTLQTFERQKRQRSEQSARQREVLR
KRQALEREQERLLQKDNGEDEFGVFFGETKGGLDDDNEDKYSPYRKIIAW
YETWRTNVAFRTLFDALQIDLRDPTATVKDEELMKILASFVASLKRIQNR
GQTKERNLERDDFDLGHPYDPKGNYFQKLIRIYRKLEDNDAFKRFLQQNE
LESLRPKYTPPVLSNSLTDALRDAGVKIVQWNSKQQYTGNTSYFEVVADF
EERVLEPLNGGPLGSEVDSLAFEVVDVDETGAVSIKVSRKXXXXIR*

spliced messenger RNA

>Gvermi14164.t1 ID=Gvermi14164.t1|Name=Gvermi14164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_359:801..2591+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACAAGGACGCGATTTGGAGTACCGCCAGATGGTGTTGCGTTACTT
GGAGTCTACGCCACTGCCAGATGTACCCGGTGTATTGGATGTGGAAGAAA
CCGAAGAACAGCGTCGTATCCGTCGAACAGTCAGGGGCCAAAACGCAATT
GAGTACAAGGAGAAGTTGGAGAAGAAGGATGAGGCAATCAAAGCAGCAAG
TGCGCTCAGGGCCAAAATTGTGTTTGCATTGTTGCAACGCAATTCTCCTT
TTAAGAAACAGGAGCGTGCTGCATTCTTAACCTGGTTTGTTTACACTGCT
TTCGAAAGAGTTAAGCAAGATCGAGTGGCGTTGATGGAAGAATTGGGCAA
GGTACGACGCCCTCCCACAAAGGAAGAACAACAATACCGACGCGGAAAAT
TGCGCCGTGAATTGGACGACTTTATTGCTAAAAAACGCACTCTGGAACGT
GAACAGATTGCCATCGAACGTTCTAGTGAGTTTCAACGCGCATTGAAACA
AGAGAGAAAGATGCGTGACTCTCTGGAAGCCGCAAAGAGAGCGGTTAAAT
TGTACAAGAGACGAAACGATCCTGCCACTACAGCAGAGTACGAAGAAGGG
TTGCTGTGGTTGGAGGAGCAACAAGAGAATGCTTCCCAAGCATTGCGTGA
AAGCAAACTGCAGCAACGACGCATGATTGATCAGGTGTCAAAACGACTAG
CGCAAGTCGCTGAAAAGGTACTCCAGGCAGAGGGTCGTTTGATTGATTAT
GAAACCCGCATGAAAGATGCGTCGCGCCCATCTGACAACGAGTCTATTGT
GTTGGGTAACATTAAGGAGTACATTGCAAATCAAATGCGTGTCGATGGAA
ACAAGGCTGAGAAATTGGACTGGATCATGACGCAATTTGATTTGTATGTC
CGAGAACGAAACGTACAACTTTTGAACGATAAGATTGAAGCCGAACTGGA
GAAGATGCAATCCGAGAGGAAGGGGCGGACGTTGCAGACTTTTGAACGTC
AGAAGAGACAACGATCAGAGCAATCCGCTCGTCAAAGAGAGGTTCTTCGG
AAACGGCAAGCTCTTGAAAGAGAACAAGAGAGATTGTTGCAAAAAGACAA
TGGTGAAGACGAATTTGGAGTGTTCTTTGGTGAAACCAAAGGGGGGTTGG
ACGACGATAACGAAGATAAGTATTCACCATATCGAAAGATTATTGCTTGG
TATGAAACGTGGCGTACAAACGTTGCCTTTAGAACACTATTTGACGCATT
GCAAATTGACCTACGTGACCCAACTGCCACGGTAAAGGACGAGGAATTGA
TGAAGATTTTGGCTTCGTTTGTGGCCAGCCTTAAACGTATTCAGAATCGA
GGACAGACCAAGGAGCGTAACCTGGAGCGCGATGATTTTGACTTGGGCCA
TCCGTACGACCCAAAGGGAAATTATTTCCAAAAGTTAATTCGCATCTACA
GAAAGCTTGAGGATAACGATGCGTTTAAGCGTTTTCTTCAACAAAACGAA
TTGGAAAGTTTAAGACCAAAGTACACACCTCCTGTGCTAAGCAATAGTTT
GACGGATGCATTACGAGATGCCGGAGTGAAGATTGTGCAGTGGAATTCCA
AACAACAGTACACTGGAAACACTAGTTATTTTGAAGTGGTAGCAGACTTT
GAAGAGCGAGTGCTTGAGCCTCTGAATGGTGGACCACTTGGGTCTGAGGT
GGATTCGCTTGCATTTGAAGTGGTGGATGTTGACGAAACAGGTGCTGTCA
GCATCAAGGTATCCCGAAAAAGNNNNNNNNNNATACGCTGA

protein sequence of Gvermi14164.t1

>Gvermi14164.t1 ID=Gvermi14164.t1|Name=Gvermi14164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=597bp
MAQGRDLEYRQMVLRYLESTPLPDVPGVLDVEETEEQRRIRRTVRGQNAI
EYKEKLEKKDEAIKAASALRAKIVFALLQRNSPFKKQERAAFLTWFVYTA
FERVKQDRVALMEELGKVRRPPTKEEQQYRRGKLRRELDDFIAKKRTLER
EQIAIERSSEFQRALKQERKMRDSLEAAKRAVKLYKRRNDPATTAEYEEG
LLWLEEQQENASQALRESKLQQRRMIDQVSKRLAQVAEKVLQAEGRLIDY
ETRMKDASRPSDNESIVLGNIKEYIANQMRVDGNKAEKLDWIMTQFDLYV
RERNVQLLNDKIEAELEKMQSERKGRTLQTFERQKRQRSEQSARQREVLR
KRQALEREQERLLQKDNGEDEFGVFFGETKGGLDDDNEDKYSPYRKIIAW
YETWRTNVAFRTLFDALQIDLRDPTATVKDEELMKILASFVASLKRIQNR
GQTKERNLERDDFDLGHPYDPKGNYFQKLIRIYRKLEDNDAFKRFLQQNE
LESLRPKYTPPVLSNSLTDALRDAGVKIVQWNSKQQYTGNTSYFEVVADF
EERVLEPLNGGPLGSEVDSLAFEVVDVDETGAVSIKVSRKXXXXIR*

mRNA from alignment at ScGOVlb_359:801..2591+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi14164.t1 ID=Gvermi14164.t1|Name=Gvermi14164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_359:801..2591+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACAAGGACGCGATTTGGAGTACCGCCAGATGGTGTTGCGTTACTT
GGAGTCTACGCCACTGCCAGATGTACCCGGTGTATTGGATGTGGAAGAAA
CCGAAGAACAGCGTCGTATCCGTCGAACAGTCAGGGGCCAAAACGCAATT
GAGTACAAGGAGAAGTTGGAGAAGAAGGATGAGGCAATCAAAGCAGCAAG
TGCGCTCAGGGCCAAAATTGTGTTTGCATTGTTGCAACGCAATTCTCCTT
TTAAGAAACAGGAGCGTGCTGCATTCTTAACCTGGTTTGTTTACACTGCT
TTCGAAAGAGTTAAGCAAGATCGAGTGGCGTTGATGGAAGAATTGGGCAA
GGTACGACGCCCTCCCACAAAGGAAGAACAACAATACCGACGCGGAAAAT
TGCGCCGTGAATTGGACGACTTTATTGCTAAAAAACGCACTCTGGAACGT
GAACAGATTGCCATCGAACGTTCTAGTGAGTTTCAACGCGCATTGAAACA
AGAGAGAAAGATGCGTGACTCTCTGGAAGCCGCAAAGAGAGCGGTTAAAT
TGTACAAGAGACGAAACGATCCTGCCACTACAGCAGAGTACGAAGAAGGG
TTGCTGTGGTTGGAGGAGCAACAAGAGAATGCTTCCCAAGCATTGCGTGA
AAGCAAACTGCAGCAACGACGCATGATTGATCAGGTGTCAAAACGACTAG
CGCAAGTCGCTGAAAAGGTACTCCAGGCAGAGGGTCGTTTGATTGATTAT
GAAACCCGCATGAAAGATGCGTCGCGCCCATCTGACAACGAGTCTATTGT
GTTGGGTAACATTAAGGAGTACATTGCAAATCAAATGCGTGTCGATGGAA
ACAAGGCTGAGAAATTGGACTGGATCATGACGCAATTTGATTTGTATGTC
CGAGAACGAAACGTACAACTTTTGAACGATAAGATTGAAGCCGAACTGGA
GAAGATGCAATCCGAGAGGAAGGGGCGGACGTTGCAGACTTTTGAACGTC
AGAAGAGACAACGATCAGAGCAATCCGCTCGTCAAAGAGAGGTTCTTCGG
AAACGGCAAGCTCTTGAAAGAGAACAAGAGAGATTGTTGCAAAAAGACAA
TGGTGAAGACGAATTTGGAGTGTTCTTTGGTGAAACCAAAGGGGGGTTGG
ACGACGATAACGAAGATAAGTATTCACCATATCGAAAGATTATTGCTTGG
TATGAAACGTGGCGTACAAACGTTGCCTTTAGAACACTATTTGACGCATT
GCAAATTGACCTACGTGACCCAACTGCCACGGTAAAGGACGAGGAATTGA
TGAAGATTTTGGCTTCGTTTGTGGCCAGCCTTAAACGTATTCAGAATCGA
GGACAGACCAAGGAGCGTAACCTGGAGCGCGATGATTTTGACTTGGGCCA
TCCGTACGACCCAAAGGGAAATTATTTCCAAAAGTTAATTCGCATCTACA
GAAAGCTTGAGGATAACGATGCGTTTAAGCGTTTTCTTCAACAAAACGAA
TTGGAAAGTTTAAGACCAAAGTACACACCTCCTGTGCTAAGCAATAGTTT
GACGGATGCATTACGAGATGCCGGAGTGAAGATTGTGCAGTGGAATTCCA
AACAACAGTACACTGGAAACACTAGTTATTTTGAAGTGGTAGCAGACTTT
GAAGAGCGAGTGCTTGAGCCTCTGAATGGTGGACCACTTGGGTCTGAGGT
GGATTCGCTTGCATTTGAAGTGGTGGATGTTGACGAAACAGGTGCTGTCA
GCATCAAGGTATCCCGAAAAAGNNNNNNNNNNATACGCTGA

Coding sequence (CDS) from alignment at ScGOVlb_359:801..2591+

>Gvermi14164.t1 ID=Gvermi14164.t1|Name=Gvermi14164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1791bp|location=Sequence derived from alignment at ScGOVlb_359:801..2591+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACAAGGACGCGATTTGGAGTACCGCCAGATGGTGTTGCGTTACTT
GGAGTCTACGCCACTGCCAGATGTACCCGGTGTATTGGATGTGGAAGAAA
CCGAAGAACAGCGTCGTATCCGTCGAACAGTCAGGGGCCAAAACGCAATT
GAGTACAAGGAGAAGTTGGAGAAGAAGGATGAGGCAATCAAAGCAGCAAG
TGCGCTCAGGGCCAAAATTGTGTTTGCATTGTTGCAACGCAATTCTCCTT
TTAAGAAACAGGAGCGTGCTGCATTCTTAACCTGGTTTGTTTACACTGCT
TTCGAAAGAGTTAAGCAAGATCGAGTGGCGTTGATGGAAGAATTGGGCAA
GGTACGACGCCCTCCCACAAAGGAAGAACAACAATACCGACGCGGAAAAT
TGCGCCGTGAATTGGACGACTTTATTGCTAAAAAACGCACTCTGGAACGT
GAACAGATTGCCATCGAACGTTCTAGTGAGTTTCAACGCGCATTGAAACA
AGAGAGAAAGATGCGTGACTCTCTGGAAGCCGCAAAGAGAGCGGTTAAAT
TGTACAAGAGACGAAACGATCCTGCCACTACAGCAGAGTACGAAGAAGGG
TTGCTGTGGTTGGAGGAGCAACAAGAGAATGCTTCCCAAGCATTGCGTGA
AAGCAAACTGCAGCAACGACGCATGATTGATCAGGTGTCAAAACGACTAG
CGCAAGTCGCTGAAAAGGTACTCCAGGCAGAGGGTCGTTTGATTGATTAT
GAAACCCGCATGAAAGATGCGTCGCGCCCATCTGACAACGAGTCTATTGT
GTTGGGTAACATTAAGGAGTACATTGCAAATCAAATGCGTGTCGATGGAA
ACAAGGCTGAGAAATTGGACTGGATCATGACGCAATTTGATTTGTATGTC
CGAGAACGAAACGTACAACTTTTGAACGATAAGATTGAAGCCGAACTGGA
GAAGATGCAATCCGAGAGGAAGGGGCGGACGTTGCAGACTTTTGAACGTC
AGAAGAGACAACGATCAGAGCAATCCGCTCGTCAAAGAGAGGTTCTTCGG
AAACGGCAAGCTCTTGAAAGAGAACAAGAGAGATTGTTGCAAAAAGACAA
TGGTGAAGACGAATTTGGAGTGTTCTTTGGTGAAACCAAAGGGGGGTTGG
ACGACGATAACGAAGATAAGTATTCACCATATCGAAAGATTATTGCTTGG
TATGAAACGTGGCGTACAAACGTTGCCTTTAGAACACTATTTGACGCATT
GCAAATTGACCTACGTGACCCAACTGCCACGGTAAAGGACGAGGAATTGA
TGAAGATTTTGGCTTCGTTTGTGGCCAGCCTTAAACGTATTCAGAATCGA
GGACAGACCAAGGAGCGTAACCTGGAGCGCGATGATTTTGACTTGGGCCA
TCCGTACGACCCAAAGGGAAATTATTTCCAAAAGTTAATTCGCATCTACA
GAAAGCTTGAGGATAACGATGCGTTTAAGCGTTTTCTTCAACAAAACGAA
TTGGAAAGTTTAAGACCAAAGTACACACCTCCTGTGCTAAGCAATAGTTT
GACGGATGCATTACGAGATGCCGGAGTGAAGATTGTGCAGTGGAATTCCA
AACAACAGTACACTGGAAACACTAGTTATTTTGAAGTGGTAGCAGACTTT
GAAGAGCGAGTGCTTGAGCCTCTGAATGGTGGACCACTTGGGTCTGAGGT
GGATTCGCTTGCATTTGAAGTGGTGGATGTTGACGAAACAGGTGCTGTCA
GCATCAAGGTATCCCGAAAAAGNNNNNNNNNNATACGCTGA