Gvermi12148.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12148.t1
Unique Name	Gvermi12148.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	701

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3574475..3576577 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12148	Gvermi12148	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3574475..3576577 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12148.t1.start1	Gvermi12148.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3574475..3574477 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12148.t1.CDS1	Gvermi12148.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3574475..3576577 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12148.t1.exon1	Gvermi12148.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3574475..3576577 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12148.t1.stop1	Gvermi12148.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3576575..3576577 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12148.t1	Gvermi12148.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3574475..3576577 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3574475..3576577+
coding sequence from alignment at ScGOVlb_3404:3574475..3576577+

mRNA sequence

>Gvermi12148.t1 ID=Gvermi12148.t1|Name=Gvermi12148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=701bp
MLRSSSFDFEAQFHHAQEGYSDSSLHIDSHATMDRRLQRKIVGCQKRFHR
YRSRTPPSPPTPLHHSHAARKTFIANIPHAFKTFITRSPSARSHSHIPHR
LNRLHGADNSRMSVLTPSLRKEFRRISYHTPQSSRVLVNLDSPTVSDSPL
KHTSRGHIAHEQHQPPPDSQTHIHPLPRSKAEPHHIPKSQSHLEPKSDSH
LRLESKPISSCQPRHSIEQNQPMELPGLAPQNSVHQRSTPILSSGEIPSA
PLIQKERAPLKLQDSPSKPSEFENEPLIPINPPVEQITPHLHSHHPPKPS
EQLLDVSTLINKYDKDNCSSECPTHAGKRPSLIPEAQHKFATMRALFESR
PTEHHRPTSLKSPPRSHTAPFLTSKPHHVFSSPSAEQTSMSSLSRTTSPK
SAMRADPEQFSKRNGTRYVKPAVSPRSPLHRRSIRTEGSITSSVTKSPDD
DTLLGDTDLECEHVGSSPLFQNADKRDVPERMNLKDLFDSLELSPDKEQK
SSSRSPRPGKVREASSTVAKLIARYGGTGEVSDQKNVLGQESEPSATREE
KPRVERNVYSVVLEEDEIEKVYQTTTKEDKKKGDSAVQLSERKGGVEAIP
WEARIKSVNVEVPEAASMAHIRKVKSHDGDNHRFKSFSLYSGTDQDSKFR
TRSEGSGRRWRKRNARAQNKSWLSRKAHEQMHKVRKHVVTVKNIMSADDY
*

spliced messenger RNA

>Gvermi12148.t1 ID=Gvermi12148.t1|Name=Gvermi12148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at ScGOVlb_3404:3574475..3576577+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGCTCCTCGTCGTTCGACTTTGAAGCGCAGTTCCACCACGCCCA
GGAGGGCTACTCCGACAGCAGCCTGCACATCGACTCTCATGCAACCATGG
ACCGCCGCCTGCAGCGCAAGATTGTCGGCTGTCAGAAGCGATTCCATCGC
TACCGCTCCAGGACGCCGCCGTCGCCGCCCACCCCCTTGCACCATTCGCA
TGCCGCGCGGAAGACCTTTATCGCCAATATCCCGCACGCCTTCAAGACTT
TTATCACTCGCTCCCCTTCTGCCCGCTCGCACAGCCATATTCCTCATCGC
CTCAACCGCTTGCATGGAGCTGACAACAGCCGCATGTCTGTCCTAACACC
TTCTCTTCGAAAGGAGTTTCGCAGGATAAGCTACCACACCCCACAGTCTT
CTCGAGTCCTTGTCAACTTGGACTCACCCACTGTTTCGGACTCACCGCTT
AAACACACGAGTCGCGGCCATATCGCTCACGAACAACATCAGCCGCCACC
AGACTCCCAGACTCATATTCACCCCCTGCCGCGTTCAAAGGCCGAGCCGC
ACCACATCCCCAAATCCCAGTCCCATCTTGAGCCCAAGTCGGATTCTCAC
CTGAGGCTAGAATCAAAGCCAATATCAAGTTGTCAACCTCGGCATAGCAT
CGAGCAGAACCAACCGATGGAGCTTCCTGGCTTAGCACCTCAGAATTCAG
TCCACCAACGGTCTACTCCTATCTTGTCTTCTGGCGAAATTCCTTCAGCC
CCTTTGATCCAAAAGGAGCGGGCGCCATTGAAACTCCAAGATTCGCCTTC
CAAGCCATCTGAGTTTGAAAACGAGCCGCTTATCCCTATTAATCCACCGG
TCGAACAAATCACCCCCCACCTGCATTCACATCATCCCCCCAAACCTTCA
GAGCAGCTCCTTGACGTATCCACCCTGATCAACAAGTATGACAAAGATAA
TTGTTCCTCAGAGTGCCCCACCCATGCGGGCAAGCGGCCCTCACTCATTC
CCGAGGCCCAGCACAAGTTTGCTACTATGAGAGCTTTATTTGAGAGTCGC
CCGACGGAGCACCATCGTCCGACATCTCTAAAGAGCCCTCCACGGAGCCA
TACTGCCCCGTTTCTAACATCAAAACCGCACCATGTTTTCTCTTCACCAA
GTGCGGAGCAAACGTCGATGTCTTCACTCAGCAGGACCACCTCACCCAAA
AGCGCGATGCGGGCTGACCCTGAACAGTTCTCCAAGAGAAATGGAACGCG
CTATGTCAAACCTGCTGTCAGCCCACGGTCTCCTCTTCACCGCAGAAGCA
TCAGAACAGAAGGTTCCATAACTTCCTCCGTTACCAAGAGTCCAGACGAC
GACACGCTCCTTGGCGACACCGATTTGGAGTGTGAACACGTTGGTTCAAG
CCCGTTGTTTCAAAATGCCGACAAGCGAGATGTGCCTGAAAGAATGAACT
TGAAAGATCTGTTTGACTCTCTCGAACTGTCTCCGGATAAGGAGCAGAAA
TCCAGTTCGAGAAGTCCCAGGCCTGGCAAAGTCAGAGAAGCGTCGTCAAC
CGTGGCGAAGCTCATTGCCAGATATGGGGGAACGGGAGAAGTGTCAGACC
AGAAAAATGTTCTTGGACAAGAATCGGAGCCTAGCGCTACACGAGAAGAA
AAGCCGAGAGTCGAGAGGAACGTGTATTCAGTCGTTTTGGAAGAAGATGA
GATTGAGAAAGTATATCAGACCACAACCAAAGAAGATAAAAAAAAGGGAG
ACTCAGCCGTGCAATTGTCAGAGCGCAAAGGCGGAGTTGAAGCCATTCCT
TGGGAAGCGCGCATCAAATCCGTCAATGTGGAGGTACCAGAGGCCGCTAG
TATGGCACACATCAGAAAGGTCAAGTCTCATGATGGAGATAACCATCGTT
TCAAATCTTTTAGTCTCTACAGCGGTACGGACCAAGACTCGAAGTTCAGA
ACAAGAAGTGAGGGAAGCGGTCGTAGGTGGCGCAAACGTAACGCGAGAGC
TCAAAACAAATCTTGGTTATCAAGGAAGGCCCATGAACAAATGCATAAAG
TCAGGAAGCACGTTGTCACTGTGAAGAACATCATGTCCGCTGACGACTAC
TAA

protein sequence of Gvermi12148.t1

>Gvermi12148.t1 ID=Gvermi12148.t1|Name=Gvermi12148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=701bp
MLRSSSFDFEAQFHHAQEGYSDSSLHIDSHATMDRRLQRKIVGCQKRFHR
YRSRTPPSPPTPLHHSHAARKTFIANIPHAFKTFITRSPSARSHSHIPHR
LNRLHGADNSRMSVLTPSLRKEFRRISYHTPQSSRVLVNLDSPTVSDSPL
KHTSRGHIAHEQHQPPPDSQTHIHPLPRSKAEPHHIPKSQSHLEPKSDSH
LRLESKPISSCQPRHSIEQNQPMELPGLAPQNSVHQRSTPILSSGEIPSA
PLIQKERAPLKLQDSPSKPSEFENEPLIPINPPVEQITPHLHSHHPPKPS
EQLLDVSTLINKYDKDNCSSECPTHAGKRPSLIPEAQHKFATMRALFESR
PTEHHRPTSLKSPPRSHTAPFLTSKPHHVFSSPSAEQTSMSSLSRTTSPK
SAMRADPEQFSKRNGTRYVKPAVSPRSPLHRRSIRTEGSITSSVTKSPDD
DTLLGDTDLECEHVGSSPLFQNADKRDVPERMNLKDLFDSLELSPDKEQK
SSSRSPRPGKVREASSTVAKLIARYGGTGEVSDQKNVLGQESEPSATREE
KPRVERNVYSVVLEEDEIEKVYQTTTKEDKKKGDSAVQLSERKGGVEAIP
WEARIKSVNVEVPEAASMAHIRKVKSHDGDNHRFKSFSLYSGTDQDSKFR
TRSEGSGRRWRKRNARAQNKSWLSRKAHEQMHKVRKHVVTVKNIMSADDY
*

mRNA from alignment at ScGOVlb_3404:3574475..3576577+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12148.t1 ID=Gvermi12148.t1|Name=Gvermi12148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at ScGOVlb_3404:3574475..3576577+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCGCTCCTCGTCGTTCGACTTTGAAGCGCAGTTCCACCACGCCCA
GGAGGGCTACTCCGACAGCAGCCTGCACATCGACTCTCATGCAACCATGG
ACCGCCGCCTGCAGCGCAAGATTGTCGGCTGTCAGAAGCGATTCCATCGC
TACCGCTCCAGGACGCCGCCGTCGCCGCCCACCCCCTTGCACCATTCGCA
TGCCGCGCGGAAGACCTTTATCGCCAATATCCCGCACGCCTTCAAGACTT
TTATCACTCGCTCCCCTTCTGCCCGCTCGCACAGCCATATTCCTCATCGC
CTCAACCGCTTGCATGGAGCTGACAACAGCCGCATGTCTGTCCTAACACC
TTCTCTTCGAAAGGAGTTTCGCAGGATAAGCTACCACACCCCACAGTCTT
CTCGAGTCCTTGTCAACTTGGACTCACCCACTGTTTCGGACTCACCGCTT
AAACACACGAGTCGCGGCCATATCGCTCACGAACAACATCAGCCGCCACC
AGACTCCCAGACTCATATTCACCCCCTGCCGCGTTCAAAGGCCGAGCCGC
ACCACATCCCCAAATCCCAGTCCCATCTTGAGCCCAAGTCGGATTCTCAC
CTGAGGCTAGAATCAAAGCCAATATCAAGTTGTCAACCTCGGCATAGCAT
CGAGCAGAACCAACCGATGGAGCTTCCTGGCTTAGCACCTCAGAATTCAG
TCCACCAACGGTCTACTCCTATCTTGTCTTCTGGCGAAATTCCTTCAGCC
CCTTTGATCCAAAAGGAGCGGGCGCCATTGAAACTCCAAGATTCGCCTTC
CAAGCCATCTGAGTTTGAAAACGAGCCGCTTATCCCTATTAATCCACCGG
TCGAACAAATCACCCCCCACCTGCATTCACATCATCCCCCCAAACCTTCA
GAGCAGCTCCTTGACGTATCCACCCTGATCAACAAGTATGACAAAGATAA
TTGTTCCTCAGAGTGCCCCACCCATGCGGGCAAGCGGCCCTCACTCATTC
CCGAGGCCCAGCACAAGTTTGCTACTATGAGAGCTTTATTTGAGAGTCGC
CCGACGGAGCACCATCGTCCGACATCTCTAAAGAGCCCTCCACGGAGCCA
TACTGCCCCGTTTCTAACATCAAAACCGCACCATGTTTTCTCTTCACCAA
GTGCGGAGCAAACGTCGATGTCTTCACTCAGCAGGACCACCTCACCCAAA
AGCGCGATGCGGGCTGACCCTGAACAGTTCTCCAAGAGAAATGGAACGCG
CTATGTCAAACCTGCTGTCAGCCCACGGTCTCCTCTTCACCGCAGAAGCA
TCAGAACAGAAGGTTCCATAACTTCCTCCGTTACCAAGAGTCCAGACGAC
GACACGCTCCTTGGCGACACCGATTTGGAGTGTGAACACGTTGGTTCAAG
CCCGTTGTTTCAAAATGCCGACAAGCGAGATGTGCCTGAAAGAATGAACT
TGAAAGATCTGTTTGACTCTCTCGAACTGTCTCCGGATAAGGAGCAGAAA
TCCAGTTCGAGAAGTCCCAGGCCTGGCAAAGTCAGAGAAGCGTCGTCAAC
CGTGGCGAAGCTCATTGCCAGATATGGGGGAACGGGAGAAGTGTCAGACC
AGAAAAATGTTCTTGGACAAGAATCGGAGCCTAGCGCTACACGAGAAGAA
AAGCCGAGAGTCGAGAGGAACGTGTATTCAGTCGTTTTGGAAGAAGATGA
GATTGAGAAAGTATATCAGACCACAACCAAAGAAGATAAAAAAAAGGGAG
ACTCAGCCGTGCAATTGTCAGAGCGCAAAGGCGGAGTTGAAGCCATTCCT
TGGGAAGCGCGCATCAAATCCGTCAATGTGGAGGTACCAGAGGCCGCTAG
TATGGCACACATCAGAAAGGTCAAGTCTCATGATGGAGATAACCATCGTT
TCAAATCTTTTAGTCTCTACAGCGGTACGGACCAAGACTCGAAGTTCAGA
ACAAGAAGTGAGGGAAGCGGTCGTAGGTGGCGCAAACGTAACGCGAGAGC
TCAAAACAAATCTTGGTTATCAAGGAAGGCCCATGAACAAATGCATAAAG
TCAGGAAGCACGTTGTCACTGTGAAGAACATCATGTCCGCTGACGACTAC
TAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3574475..3576577+

>Gvermi12148.t1 ID=Gvermi12148.t1|Name=Gvermi12148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2103bp|location=Sequence derived from alignment at ScGOVlb_3404:3574475..3576577+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCGCTCCTCGTCGTTCGACTTTGAAGCGCAGTTCCACCACGCCCA
GGAGGGCTACTCCGACAGCAGCCTGCACATCGACTCTCATGCAACCATGG
ACCGCCGCCTGCAGCGCAAGATTGTCGGCTGTCAGAAGCGATTCCATCGC
TACCGCTCCAGGACGCCGCCGTCGCCGCCCACCCCCTTGCACCATTCGCA
TGCCGCGCGGAAGACCTTTATCGCCAATATCCCGCACGCCTTCAAGACTT
TTATCACTCGCTCCCCTTCTGCCCGCTCGCACAGCCATATTCCTCATCGC
CTCAACCGCTTGCATGGAGCTGACAACAGCCGCATGTCTGTCCTAACACC
TTCTCTTCGAAAGGAGTTTCGCAGGATAAGCTACCACACCCCACAGTCTT
CTCGAGTCCTTGTCAACTTGGACTCACCCACTGTTTCGGACTCACCGCTT
AAACACACGAGTCGCGGCCATATCGCTCACGAACAACATCAGCCGCCACC
AGACTCCCAGACTCATATTCACCCCCTGCCGCGTTCAAAGGCCGAGCCGC
ACCACATCCCCAAATCCCAGTCCCATCTTGAGCCCAAGTCGGATTCTCAC
CTGAGGCTAGAATCAAAGCCAATATCAAGTTGTCAACCTCGGCATAGCAT
CGAGCAGAACCAACCGATGGAGCTTCCTGGCTTAGCACCTCAGAATTCAG
TCCACCAACGGTCTACTCCTATCTTGTCTTCTGGCGAAATTCCTTCAGCC
CCTTTGATCCAAAAGGAGCGGGCGCCATTGAAACTCCAAGATTCGCCTTC
CAAGCCATCTGAGTTTGAAAACGAGCCGCTTATCCCTATTAATCCACCGG
TCGAACAAATCACCCCCCACCTGCATTCACATCATCCCCCCAAACCTTCA
GAGCAGCTCCTTGACGTATCCACCCTGATCAACAAGTATGACAAAGATAA
TTGTTCCTCAGAGTGCCCCACCCATGCGGGCAAGCGGCCCTCACTCATTC
CCGAGGCCCAGCACAAGTTTGCTACTATGAGAGCTTTATTTGAGAGTCGC
CCGACGGAGCACCATCGTCCGACATCTCTAAAGAGCCCTCCACGGAGCCA
TACTGCCCCGTTTCTAACATCAAAACCGCACCATGTTTTCTCTTCACCAA
GTGCGGAGCAAACGTCGATGTCTTCACTCAGCAGGACCACCTCACCCAAA
AGCGCGATGCGGGCTGACCCTGAACAGTTCTCCAAGAGAAATGGAACGCG
CTATGTCAAACCTGCTGTCAGCCCACGGTCTCCTCTTCACCGCAGAAGCA
TCAGAACAGAAGGTTCCATAACTTCCTCCGTTACCAAGAGTCCAGACGAC
GACACGCTCCTTGGCGACACCGATTTGGAGTGTGAACACGTTGGTTCAAG
CCCGTTGTTTCAAAATGCCGACAAGCGAGATGTGCCTGAAAGAATGAACT
TGAAAGATCTGTTTGACTCTCTCGAACTGTCTCCGGATAAGGAGCAGAAA
TCCAGTTCGAGAAGTCCCAGGCCTGGCAAAGTCAGAGAAGCGTCGTCAAC
CGTGGCGAAGCTCATTGCCAGATATGGGGGAACGGGAGAAGTGTCAGACC
AGAAAAATGTTCTTGGACAAGAATCGGAGCCTAGCGCTACACGAGAAGAA
AAGCCGAGAGTCGAGAGGAACGTGTATTCAGTCGTTTTGGAAGAAGATGA
GATTGAGAAAGTATATCAGACCACAACCAAAGAAGATAAAAAAAAGGGAG
ACTCAGCCGTGCAATTGTCAGAGCGCAAAGGCGGAGTTGAAGCCATTCCT
TGGGAAGCGCGCATCAAATCCGTCAATGTGGAGGTACCAGAGGCCGCTAG
TATGGCACACATCAGAAAGGTCAAGTCTCATGATGGAGATAACCATCGTT
TCAAATCTTTTAGTCTCTACAGCGGTACGGACCAAGACTCGAAGTTCAGA
ACAAGAAGTGAGGGAAGCGGTCGTAGGTGGCGCAAACGTAACGCGAGAGC
TCAAAACAAATCTTGGTTATCAAGGAAGGCCCATGAACAAATGCATAAAG
TCAGGAAGCACGTTGTCACTGTGAAGAACATCATGTCCGCTGACGACTAC
TAA