Gvermi12327.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12327.t1
Unique Name	Gvermi12327.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	610

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4230834..4232663 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	244581.IM40_04385
Preferred name	atm1
PFAMs	ABC_membrane,ABC_tran
Max annot lvl	766\|Rickettsiales
KEGG ko	ko:K06147
KEGG TC	3.A.1.106,3.A.1.109,3.A.1.21
Evalue	1.15e-132
EggNOG OGs	COG5265@1\|root,COG5265@2\|Bacteria,1NSKS@1224\|Proteobacteria,2UQAG@28211\|Alphaproteobacteria,47EV9@766\|Rickettsiales
Description	ABC transporter transmembrane region
COG category	V
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12327	Gvermi12327	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4230834..4232663 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12327.t1.start1	Gvermi12327.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4230834..4230836 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12327.t1.CDS1	Gvermi12327.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4230834..4232663 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12327.t1.exon1	Gvermi12327.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4230834..4232663 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12327.t1.stop1	Gvermi12327.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4232661..4232663 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12327.t1	Gvermi12327.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4230834..4232663 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4230834..4232663+
coding sequence from alignment at ScGOVlb_3404:4230834..4232663+

mRNA sequence

>Gvermi12327.t1 ID=Gvermi12327.t1|Name=Gvermi12327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=610bp
MRFCLPFIVPNTFRLKLYSLLCVLCITGYKACLLVPGLSMKIVVDALASN
DPDVKAHRPILGLLLFLGGRALGGVLGQGQELAQEYCGSYLSKVFAVRSF
SHIQSLSLSYHTTKNTGETTSILGRGIGSINSLLRLVVFNLGPTIIEAIF
VSGIFFRLGSPLIALVTLITVVGYVVFTGYMTQWRVRCGRELREAQNKAW
SCATETIVNFGTVKSFGMEKAEVSRYASLWEIAQQIAVRSTGILTGFKFG
QTFIVHLGTFFGLVIAAVQASKNVITIGDFTMIQAYIGQLFGPLLWFGNS
YGQMVSALTNLEQVMELFEKESEVQDAPNAEELTIDVENGESKGGEIVFD
NVSFAYTGGVEELDPGAKHGGQVVNISFRVPAGKMVALVGPSGAGKSTMV
KLLLRLYDTQEGHVLIDGKDVKSLKQDSLRHAIGLVAQETTLFNDTLEKN
IKFGRPDATDDELWNAIRLASLEEFILKQPLGLKTGVGDQGLRLSGGERQ
RVGIARAVLKNPAIMLLDEATSALSTIDERRIQKNLQQLCQGRTTVAVAH
RLSTVMMADEILVVNKGRIVERGSHDELVLKNGLYAHMWAIQAGIANEGG
SEDGIEQVY*

spliced messenger RNA

>Gvermi12327.t1 ID=Gvermi12327.t1|Name=Gvermi12327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1830bp|location=Sequence derived from alignment at ScGOVlb_3404:4230834..4232663+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTTTTGCCTCCCCTTCATCGTCCCAAATACGTTCCGCCTCAAGCT
TTATTCGCTTCTGTGCGTTCTCTGCATAACGGGATACAAAGCATGCTTGC
TCGTACCAGGCTTGTCCATGAAGATAGTTGTTGATGCCTTAGCGAGCAAT
GATCCGGATGTTAAGGCTCATCGCCCAATACTTGGGTTGTTATTATTTCT
GGGTGGTCGCGCACTTGGGGGAGTTCTCGGTCAAGGACAAGAACTTGCCC
AGGAATACTGCGGTTCTTACCTTTCCAAGGTATTTGCAGTCCGATCATTC
AGTCATATCCAATCTCTTTCATTGTCGTACCATACTACCAAGAATACTGG
TGAGACGACTTCCATTCTTGGGCGCGGGATTGGATCTATAAACAGCCTTT
TACGGTTGGTCGTATTCAATCTCGGACCCACGATTATTGAGGCCATTTTT
GTGTCTGGTATATTCTTTCGGCTCGGCTCGCCGCTTATAGCATTGGTAAC
ACTGATAACAGTGGTCGGATATGTCGTCTTTACTGGCTACATGACGCAGT
GGAGAGTTCGATGTGGGCGTGAACTTCGTGAAGCGCAGAACAAGGCCTGG
TCGTGCGCAACGGAGACGATAGTAAACTTCGGTACCGTCAAGTCTTTTGG
GATGGAAAAAGCCGAAGTATCAAGATATGCTTCCTTGTGGGAAATCGCGC
AGCAAATCGCCGTAAGATCCACTGGGATCCTCACGGGATTCAAGTTCGGA
CAAACTTTCATCGTACACCTTGGTACTTTCTTTGGACTCGTAATTGCCGC
AGTTCAGGCCTCAAAGAACGTTATTACCATTGGTGATTTTACGATGATTC
AGGCGTATATTGGTCAACTGTTTGGACCGTTGCTGTGGTTTGGAAACTCA
TACGGGCAGATGGTGTCGGCTTTGACGAATCTGGAGCAAGTCATGGAGCT
TTTCGAGAAGGAAAGCGAAGTACAAGACGCACCAAATGCTGAGGAACTAA
CCATCGACGTGGAGAACGGAGAGTCAAAGGGAGGAGAAATCGTATTTGAC
AACGTTTCTTTCGCATACACTGGCGGTGTGGAAGAACTCGACCCTGGTGC
TAAGCATGGGGGGCAAGTGGTGAATATAAGCTTCCGTGTTCCTGCCGGTA
AAATGGTTGCATTAGTGGGTCCGTCAGGTGCTGGAAAGTCCACGATGGTG
AAGTTACTTCTTCGCCTCTACGATACACAAGAAGGGCATGTCCTGATTGA
CGGAAAGGATGTGAAGTCTCTCAAGCAAGACTCTCTACGTCACGCGATCG
GACTCGTCGCTCAGGAAACCACTCTCTTCAACGACACGTTGGAAAAGAAT
ATTAAGTTTGGAAGACCAGATGCAACAGATGACGAACTTTGGAACGCAAT
TCGCTTAGCTTCTCTGGAAGAATTCATTCTGAAGCAACCGCTCGGATTGA
AGACCGGAGTCGGAGATCAAGGACTTCGACTCTCTGGCGGGGAGAGGCAG
CGGGTGGGCATTGCACGCGCAGTTTTGAAAAATCCAGCCATCATGCTCTT
GGATGAGGCTACGTCGGCATTGTCAACAATTGATGAACGCCGTATTCAAA
AAAACCTTCAGCAGCTCTGCCAAGGTCGTACAACTGTAGCCGTAGCACAT
CGTTTATCAACTGTCATGATGGCAGATGAAATATTAGTGGTCAACAAAGG
AAGAATTGTTGAACGTGGTTCACATGACGAGTTAGTGCTGAAAAATGGAC
TATATGCACACATGTGGGCCATCCAGGCTGGAATAGCCAACGAGGGTGGC
TCTGAAGACGGTATAGAACAGGTGTATTGA

protein sequence of Gvermi12327.t1

>Gvermi12327.t1 ID=Gvermi12327.t1|Name=Gvermi12327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=610bp
MRFCLPFIVPNTFRLKLYSLLCVLCITGYKACLLVPGLSMKIVVDALASN
DPDVKAHRPILGLLLFLGGRALGGVLGQGQELAQEYCGSYLSKVFAVRSF
SHIQSLSLSYHTTKNTGETTSILGRGIGSINSLLRLVVFNLGPTIIEAIF
VSGIFFRLGSPLIALVTLITVVGYVVFTGYMTQWRVRCGRELREAQNKAW
SCATETIVNFGTVKSFGMEKAEVSRYASLWEIAQQIAVRSTGILTGFKFG
QTFIVHLGTFFGLVIAAVQASKNVITIGDFTMIQAYIGQLFGPLLWFGNS
YGQMVSALTNLEQVMELFEKESEVQDAPNAEELTIDVENGESKGGEIVFD
NVSFAYTGGVEELDPGAKHGGQVVNISFRVPAGKMVALVGPSGAGKSTMV
KLLLRLYDTQEGHVLIDGKDVKSLKQDSLRHAIGLVAQETTLFNDTLEKN
IKFGRPDATDDELWNAIRLASLEEFILKQPLGLKTGVGDQGLRLSGGERQ
RVGIARAVLKNPAIMLLDEATSALSTIDERRIQKNLQQLCQGRTTVAVAH
RLSTVMMADEILVVNKGRIVERGSHDELVLKNGLYAHMWAIQAGIANEGG
SEDGIEQVY*

mRNA from alignment at ScGOVlb_3404:4230834..4232663+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12327.t1 ID=Gvermi12327.t1|Name=Gvermi12327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1830bp|location=Sequence derived from alignment at ScGOVlb_3404:4230834..4232663+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGTTTTGCCTCCCCTTCATCGTCCCAAATACGTTCCGCCTCAAGCT
TTATTCGCTTCTGTGCGTTCTCTGCATAACGGGATACAAAGCATGCTTGC
TCGTACCAGGCTTGTCCATGAAGATAGTTGTTGATGCCTTAGCGAGCAAT
GATCCGGATGTTAAGGCTCATCGCCCAATACTTGGGTTGTTATTATTTCT
GGGTGGTCGCGCACTTGGGGGAGTTCTCGGTCAAGGACAAGAACTTGCCC
AGGAATACTGCGGTTCTTACCTTTCCAAGGTATTTGCAGTCCGATCATTC
AGTCATATCCAATCTCTTTCATTGTCGTACCATACTACCAAGAATACTGG
TGAGACGACTTCCATTCTTGGGCGCGGGATTGGATCTATAAACAGCCTTT
TACGGTTGGTCGTATTCAATCTCGGACCCACGATTATTGAGGCCATTTTT
GTGTCTGGTATATTCTTTCGGCTCGGCTCGCCGCTTATAGCATTGGTAAC
ACTGATAACAGTGGTCGGATATGTCGTCTTTACTGGCTACATGACGCAGT
GGAGAGTTCGATGTGGGCGTGAACTTCGTGAAGCGCAGAACAAGGCCTGG
TCGTGCGCAACGGAGACGATAGTAAACTTCGGTACCGTCAAGTCTTTTGG
GATGGAAAAAGCCGAAGTATCAAGATATGCTTCCTTGTGGGAAATCGCGC
AGCAAATCGCCGTAAGATCCACTGGGATCCTCACGGGATTCAAGTTCGGA
CAAACTTTCATCGTACACCTTGGTACTTTCTTTGGACTCGTAATTGCCGC
AGTTCAGGCCTCAAAGAACGTTATTACCATTGGTGATTTTACGATGATTC
AGGCGTATATTGGTCAACTGTTTGGACCGTTGCTGTGGTTTGGAAACTCA
TACGGGCAGATGGTGTCGGCTTTGACGAATCTGGAGCAAGTCATGGAGCT
TTTCGAGAAGGAAAGCGAAGTACAAGACGCACCAAATGCTGAGGAACTAA
CCATCGACGTGGAGAACGGAGAGTCAAAGGGAGGAGAAATCGTATTTGAC
AACGTTTCTTTCGCATACACTGGCGGTGTGGAAGAACTCGACCCTGGTGC
TAAGCATGGGGGGCAAGTGGTGAATATAAGCTTCCGTGTTCCTGCCGGTA
AAATGGTTGCATTAGTGGGTCCGTCAGGTGCTGGAAAGTCCACGATGGTG
AAGTTACTTCTTCGCCTCTACGATACACAAGAAGGGCATGTCCTGATTGA
CGGAAAGGATGTGAAGTCTCTCAAGCAAGACTCTCTACGTCACGCGATCG
GACTCGTCGCTCAGGAAACCACTCTCTTCAACGACACGTTGGAAAAGAAT
ATTAAGTTTGGAAGACCAGATGCAACAGATGACGAACTTTGGAACGCAAT
TCGCTTAGCTTCTCTGGAAGAATTCATTCTGAAGCAACCGCTCGGATTGA
AGACCGGAGTCGGAGATCAAGGACTTCGACTCTCTGGCGGGGAGAGGCAG
CGGGTGGGCATTGCACGCGCAGTTTTGAAAAATCCAGCCATCATGCTCTT
GGATGAGGCTACGTCGGCATTGTCAACAATTGATGAACGCCGTATTCAAA
AAAACCTTCAGCAGCTCTGCCAAGGTCGTACAACTGTAGCCGTAGCACAT
CGTTTATCAACTGTCATGATGGCAGATGAAATATTAGTGGTCAACAAAGG
AAGAATTGTTGAACGTGGTTCACATGACGAGTTAGTGCTGAAAAATGGAC
TATATGCACACATGTGGGCCATCCAGGCTGGAATAGCCAACGAGGGTGGC
TCTGAAGACGGTATAGAACAGGTGTATTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4230834..4232663+

>Gvermi12327.t1 ID=Gvermi12327.t1|Name=Gvermi12327.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1830bp|location=Sequence derived from alignment at ScGOVlb_3404:4230834..4232663+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGTTTTGCCTCCCCTTCATCGTCCCAAATACGTTCCGCCTCAAGCT
TTATTCGCTTCTGTGCGTTCTCTGCATAACGGGATACAAAGCATGCTTGC
TCGTACCAGGCTTGTCCATGAAGATAGTTGTTGATGCCTTAGCGAGCAAT
GATCCGGATGTTAAGGCTCATCGCCCAATACTTGGGTTGTTATTATTTCT
GGGTGGTCGCGCACTTGGGGGAGTTCTCGGTCAAGGACAAGAACTTGCCC
AGGAATACTGCGGTTCTTACCTTTCCAAGGTATTTGCAGTCCGATCATTC
AGTCATATCCAATCTCTTTCATTGTCGTACCATACTACCAAGAATACTGG
TGAGACGACTTCCATTCTTGGGCGCGGGATTGGATCTATAAACAGCCTTT
TACGGTTGGTCGTATTCAATCTCGGACCCACGATTATTGAGGCCATTTTT
GTGTCTGGTATATTCTTTCGGCTCGGCTCGCCGCTTATAGCATTGGTAAC
ACTGATAACAGTGGTCGGATATGTCGTCTTTACTGGCTACATGACGCAGT
GGAGAGTTCGATGTGGGCGTGAACTTCGTGAAGCGCAGAACAAGGCCTGG
TCGTGCGCAACGGAGACGATAGTAAACTTCGGTACCGTCAAGTCTTTTGG
GATGGAAAAAGCCGAAGTATCAAGATATGCTTCCTTGTGGGAAATCGCGC
AGCAAATCGCCGTAAGATCCACTGGGATCCTCACGGGATTCAAGTTCGGA
CAAACTTTCATCGTACACCTTGGTACTTTCTTTGGACTCGTAATTGCCGC
AGTTCAGGCCTCAAAGAACGTTATTACCATTGGTGATTTTACGATGATTC
AGGCGTATATTGGTCAACTGTTTGGACCGTTGCTGTGGTTTGGAAACTCA
TACGGGCAGATGGTGTCGGCTTTGACGAATCTGGAGCAAGTCATGGAGCT
TTTCGAGAAGGAAAGCGAAGTACAAGACGCACCAAATGCTGAGGAACTAA
CCATCGACGTGGAGAACGGAGAGTCAAAGGGAGGAGAAATCGTATTTGAC
AACGTTTCTTTCGCATACACTGGCGGTGTGGAAGAACTCGACCCTGGTGC
TAAGCATGGGGGGCAAGTGGTGAATATAAGCTTCCGTGTTCCTGCCGGTA
AAATGGTTGCATTAGTGGGTCCGTCAGGTGCTGGAAAGTCCACGATGGTG
AAGTTACTTCTTCGCCTCTACGATACACAAGAAGGGCATGTCCTGATTGA
CGGAAAGGATGTGAAGTCTCTCAAGCAAGACTCTCTACGTCACGCGATCG
GACTCGTCGCTCAGGAAACCACTCTCTTCAACGACACGTTGGAAAAGAAT
ATTAAGTTTGGAAGACCAGATGCAACAGATGACGAACTTTGGAACGCAAT
TCGCTTAGCTTCTCTGGAAGAATTCATTCTGAAGCAACCGCTCGGATTGA
AGACCGGAGTCGGAGATCAAGGACTTCGACTCTCTGGCGGGGAGAGGCAG
CGGGTGGGCATTGCACGCGCAGTTTTGAAAAATCCAGCCATCATGCTCTT
GGATGAGGCTACGTCGGCATTGTCAACAATTGATGAACGCCGTATTCAAA
AAAACCTTCAGCAGCTCTGCCAAGGTCGTACAACTGTAGCCGTAGCACAT
CGTTTATCAACTGTCATGATGGCAGATGAAATATTAGTGGTCAACAAAGG
AAGAATTGTTGAACGTGGTTCACATGACGAGTTAGTGCTGAAAAATGGAC
TATATGCACACATGTGGGCCATCCAGGCTGGAATAGCCAACGAGGGTGGC
TCTGAAGACGGTATAGAACAGGTGTATTGA