Gvermi12479.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12479.t1
Unique NameGvermi12479.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length425
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5172472..5173746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926554.KI912677_gene2479
PFAMsCollagen_bind_2,DUF5060,Kelch_1,NPCBM
Max annot lvl2|Bacteria
Evalue8.51e-35
EggNOG OGsCOG3055@1|root,COG3055@2|Bacteria
DescriptionConverts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12479Gvermi12479Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5172472..5173746 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12479.t1.start1Gvermi12479.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5172472..5172474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12479.t1.CDS1Gvermi12479.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5172472..5173746 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12479.t1.exon1Gvermi12479.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5172472..5173746 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12479.t1.stop1Gvermi12479.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5173744..5173746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12479.t1Gvermi12479.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5172472..5173746 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12479.t1 ID=Gvermi12479.t1|Name=Gvermi12479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=425bp
MALLVQLCFSLLVFFTLSVSAQESDAVADVTPLLMEVDFTPTPLPQAEAT
PAVVSTTPEPVSWTPEPVTHTPEPVAVTPEPVKESAQPDAASAQDGSTDA
SEKGSDVHFAMNEWRPKPKYPLAVLESAGGVLRTADGAKLLMVAGGYIDN
SALLTTSKAYVLNLNEADAVWERVADMPLHLTHCAQAFVGDRLYVCGGFL
SKAPGRSIGQCYVYSYGKNEWDDLPKLPLAVGGGGMVYISQMNALLFSSG
MIRHQDEWHGEDSAQSFMLHLDDLERGWVRKADIFNARNHMSAVSVLGRY
FFVGGQKGANEEHGNQQTVQEYDFKKDEWLDRAPLPMGLGHIAASTFRYG
KGFFVIAGVTNGRKPVDAVLYYDAVQDAWRTVGKYWRAVQSAVCGAADGA
LYCTTGRGHPGRSDETYWRRVSKL*
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spliced messenger RNA

>Gvermi12479.t1 ID=Gvermi12479.t1|Name=Gvermi12479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at ScGOVlb_3404:5172472..5173746+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGCTTGTGCAGCTATGCTTCTCACTGCTTGTATTTTTTACTCT
AAGCGTTTCTGCGCAAGAAAGTGATGCAGTGGCCGACGTGACCCCTCTCC
TGATGGAGGTGGACTTCACCCCAACGCCGCTTCCGCAGGCAGAAGCTACG
CCGGCGGTCGTGAGCACTACACCAGAGCCAGTCAGTTGGACCCCAGAGCC
CGTCACACACACTCCGGAACCGGTCGCTGTGACACCAGAACCTGTGAAGG
AAAGTGCGCAACCGGATGCAGCTTCTGCGCAGGACGGTTCCACTGACGCG
TCGGAAAAGGGCTCGGATGTGCACTTTGCGATGAACGAATGGCGCCCAAA
GCCAAAGTACCCCCTGGCGGTGCTGGAGTCGGCCGGGGGCGTTTTGCGTA
CCGCCGACGGTGCCAAGCTGCTGATGGTGGCTGGCGGCTACATTGATAAC
AGTGCATTGCTGACAACGAGCAAGGCGTACGTGTTGAACTTGAACGAGGC
GGACGCTGTGTGGGAGCGAGTGGCGGACATGCCGCTCCACTTGACGCATT
GCGCGCAGGCTTTTGTGGGCGACCGTCTGTACGTGTGCGGCGGCTTTCTG
TCCAAGGCGCCCGGGCGATCGATCGGTCAGTGCTATGTGTACTCGTACGG
CAAGAACGAGTGGGACGATCTGCCCAAGTTGCCGCTGGCCGTGGGCGGCG
GCGGCATGGTGTACATCTCGCAGATGAACGCACTGTTGTTCTCTTCCGGC
ATGATTCGCCATCAGGACGAGTGGCACGGGGAGGACTCTGCGCAGAGTTT
CATGCTGCACCTGGACGACTTGGAGAGAGGGTGGGTGCGAAAGGCGGACA
TTTTCAACGCGCGTAACCACATGTCGGCGGTGAGCGTGCTCGGGCGTTAC
TTTTTCGTGGGGGGACAGAAGGGGGCGAACGAGGAGCACGGGAACCAACA
AACGGTGCAGGAGTACGACTTCAAGAAGGACGAGTGGCTGGACAGGGCGC
CGCTGCCGATGGGGCTGGGTCACATTGCGGCGAGCACGTTCAGGTACGGG
AAGGGATTCTTTGTTATCGCCGGCGTCACGAACGGAAGGAAGCCCGTGGA
CGCGGTGCTTTACTACGACGCGGTGCAGGATGCGTGGAGGACAGTCGGAA
AGTACTGGCGCGCGGTGCAGAGCGCGGTGTGTGGGGCGGCGGACGGGGCG
CTGTACTGCACGACGGGGCGCGGACACCCTGGCCGGTCGGACGAGACGTA
CTGGCGTCGGGTGTCCAAGCTGTAG
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protein sequence of Gvermi12479.t1

>Gvermi12479.t1 ID=Gvermi12479.t1|Name=Gvermi12479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=425bp
MALLVQLCFSLLVFFTLSVSAQESDAVADVTPLLMEVDFTPTPLPQAEAT
PAVVSTTPEPVSWTPEPVTHTPEPVAVTPEPVKESAQPDAASAQDGSTDA
SEKGSDVHFAMNEWRPKPKYPLAVLESAGGVLRTADGAKLLMVAGGYIDN
SALLTTSKAYVLNLNEADAVWERVADMPLHLTHCAQAFVGDRLYVCGGFL
SKAPGRSIGQCYVYSYGKNEWDDLPKLPLAVGGGGMVYISQMNALLFSSG
MIRHQDEWHGEDSAQSFMLHLDDLERGWVRKADIFNARNHMSAVSVLGRY
FFVGGQKGANEEHGNQQTVQEYDFKKDEWLDRAPLPMGLGHIAASTFRYG
KGFFVIAGVTNGRKPVDAVLYYDAVQDAWRTVGKYWRAVQSAVCGAADGA
LYCTTGRGHPGRSDETYWRRVSKL*
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mRNA from alignment at ScGOVlb_3404:5172472..5173746+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12479.t1 ID=Gvermi12479.t1|Name=Gvermi12479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at ScGOVlb_3404:5172472..5173746+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTGCTTGTGCAGCTATGCTTCTCACTGCTTGTATTTTTTACTCT
AAGCGTTTCTGCGCAAGAAAGTGATGCAGTGGCCGACGTGACCCCTCTCC
TGATGGAGGTGGACTTCACCCCAACGCCGCTTCCGCAGGCAGAAGCTACG
CCGGCGGTCGTGAGCACTACACCAGAGCCAGTCAGTTGGACCCCAGAGCC
CGTCACACACACTCCGGAACCGGTCGCTGTGACACCAGAACCTGTGAAGG
AAAGTGCGCAACCGGATGCAGCTTCTGCGCAGGACGGTTCCACTGACGCG
TCGGAAAAGGGCTCGGATGTGCACTTTGCGATGAACGAATGGCGCCCAAA
GCCAAAGTACCCCCTGGCGGTGCTGGAGTCGGCCGGGGGCGTTTTGCGTA
CCGCCGACGGTGCCAAGCTGCTGATGGTGGCTGGCGGCTACATTGATAAC
AGTGCATTGCTGACAACGAGCAAGGCGTACGTGTTGAACTTGAACGAGGC
GGACGCTGTGTGGGAGCGAGTGGCGGACATGCCGCTCCACTTGACGCATT
GCGCGCAGGCTTTTGTGGGCGACCGTCTGTACGTGTGCGGCGGCTTTCTG
TCCAAGGCGCCCGGGCGATCGATCGGTCAGTGCTATGTGTACTCGTACGG
CAAGAACGAGTGGGACGATCTGCCCAAGTTGCCGCTGGCCGTGGGCGGCG
GCGGCATGGTGTACATCTCGCAGATGAACGCACTGTTGTTCTCTTCCGGC
ATGATTCGCCATCAGGACGAGTGGCACGGGGAGGACTCTGCGCAGAGTTT
CATGCTGCACCTGGACGACTTGGAGAGAGGGTGGGTGCGAAAGGCGGACA
TTTTCAACGCGCGTAACCACATGTCGGCGGTGAGCGTGCTCGGGCGTTAC
TTTTTCGTGGGGGGACAGAAGGGGGCGAACGAGGAGCACGGGAACCAACA
AACGGTGCAGGAGTACGACTTCAAGAAGGACGAGTGGCTGGACAGGGCGC
CGCTGCCGATGGGGCTGGGTCACATTGCGGCGAGCACGTTCAGGTACGGG
AAGGGATTCTTTGTTATCGCCGGCGTCACGAACGGAAGGAAGCCCGTGGA
CGCGGTGCTTTACTACGACGCGGTGCAGGATGCGTGGAGGACAGTCGGAA
AGTACTGGCGCGCGGTGCAGAGCGCGGTGTGTGGGGCGGCGGACGGGGCG
CTGTACTGCACGACGGGGCGCGGACACCCTGGCCGGTCGGACGAGACGTA
CTGGCGTCGGGTGTCCAAGCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5172472..5173746+

>Gvermi12479.t1 ID=Gvermi12479.t1|Name=Gvermi12479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1275bp|location=Sequence derived from alignment at ScGOVlb_3404:5172472..5173746+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTGCTTGTGCAGCTATGCTTCTCACTGCTTGTATTTTTTACTCT
AAGCGTTTCTGCGCAAGAAAGTGATGCAGTGGCCGACGTGACCCCTCTCC
TGATGGAGGTGGACTTCACCCCAACGCCGCTTCCGCAGGCAGAAGCTACG
CCGGCGGTCGTGAGCACTACACCAGAGCCAGTCAGTTGGACCCCAGAGCC
CGTCACACACACTCCGGAACCGGTCGCTGTGACACCAGAACCTGTGAAGG
AAAGTGCGCAACCGGATGCAGCTTCTGCGCAGGACGGTTCCACTGACGCG
TCGGAAAAGGGCTCGGATGTGCACTTTGCGATGAACGAATGGCGCCCAAA
GCCAAAGTACCCCCTGGCGGTGCTGGAGTCGGCCGGGGGCGTTTTGCGTA
CCGCCGACGGTGCCAAGCTGCTGATGGTGGCTGGCGGCTACATTGATAAC
AGTGCATTGCTGACAACGAGCAAGGCGTACGTGTTGAACTTGAACGAGGC
GGACGCTGTGTGGGAGCGAGTGGCGGACATGCCGCTCCACTTGACGCATT
GCGCGCAGGCTTTTGTGGGCGACCGTCTGTACGTGTGCGGCGGCTTTCTG
TCCAAGGCGCCCGGGCGATCGATCGGTCAGTGCTATGTGTACTCGTACGG
CAAGAACGAGTGGGACGATCTGCCCAAGTTGCCGCTGGCCGTGGGCGGCG
GCGGCATGGTGTACATCTCGCAGATGAACGCACTGTTGTTCTCTTCCGGC
ATGATTCGCCATCAGGACGAGTGGCACGGGGAGGACTCTGCGCAGAGTTT
CATGCTGCACCTGGACGACTTGGAGAGAGGGTGGGTGCGAAAGGCGGACA
TTTTCAACGCGCGTAACCACATGTCGGCGGTGAGCGTGCTCGGGCGTTAC
TTTTTCGTGGGGGGACAGAAGGGGGCGAACGAGGAGCACGGGAACCAACA
AACGGTGCAGGAGTACGACTTCAAGAAGGACGAGTGGCTGGACAGGGCGC
CGCTGCCGATGGGGCTGGGTCACATTGCGGCGAGCACGTTCAGGTACGGG
AAGGGATTCTTTGTTATCGCCGGCGTCACGAACGGAAGGAAGCCCGTGGA
CGCGGTGCTTTACTACGACGCGGTGCAGGATGCGTGGAGGACAGTCGGAA
AGTACTGGCGCGCGGTGCAGAGCGCGGTGTGTGGGGCGGCGGACGGGGCG
CTGTACTGCACGACGGGGCGCGGACACCCTGGCCGGTCGGACGAGACGTA
CTGGCGTCGGGTGTCCAAGCTGTAG
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