Gvermi12224.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12224.t1
Unique Name	Gvermi12224.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	400

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3903534..3904733 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	179408.Osc7112_4059
PFAMs	GAF_2,Guanylate_cyc,Response_reg
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00295
KEGG ko	ko:K01768
KEGG Reaction	R00089,R00434
KEGG Pathway	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213
KEGG Module	M00695
Evalue	0.000562
EggNOG OGs	COG2114@1\|root,COG2199@1\|root,COG2203@1\|root,COG2114@2\|Bacteria,COG2203@2\|Bacteria,COG3706@2\|Bacteria,1FZXP@1117\|Cyanobacteria,1HAAW@1150\|Oscillatoriales
EC	4.6.1.1
Description	SMART Adenylyl cyclase class-3 4 guanylyl cyclase
COG category	T
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12224	Gvermi12224	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3903534..3904733 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12224.t1.start1	Gvermi12224.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3903534..3903536 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12224.t1.CDS1	Gvermi12224.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3903534..3904733 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12224.t1.exon1	Gvermi12224.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3903534..3904733 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12224.t1.stop1	Gvermi12224.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3904731..3904733 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12224.t1	Gvermi12224.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3903534..3904733 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3903534..3904733+
coding sequence from alignment at ScGOVlb_3404:3903534..3904733+

mRNA sequence

>Gvermi12224.t1 ID=Gvermi12224.t1|Name=Gvermi12224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=400bp
LSNQNLSVASDVSSNPLSVSSPDSNSASTDLDWSTAKAEPQAHSPSKTSA
RNAPHPPRNSTPCINDLSPEPPKSHTRRCREKVTRQFENLLQVLPPPPRG
VEVRHKAQILDYTISVFQRLLARRTSLQTHIALASNQSVRDWANSTMAKA
LALLKSNPASDPPSISSLADPFMRFYCVKNSWAYAETWITSYESTHASLR
SCFVNAQHSHLSNTLNAFASSSKARYQSPCSVVTGIISRVRQTRRPEWLS
DLPSDQSVFDRAGVARKSNVNVALAIPVIAANKCLAVMLFADVTSKPYSA
HAVDQVFQYASILAESFVQHSRGAPSMQQPTVAITCGGQLVLNPGVSMDA
ESGLQAFANAEADICTPHGWPSAALMIPQATQGSPKSFLEESQLVRMKY*

spliced messenger RNA

>Gvermi12224.t1 ID=Gvermi12224.t1|Name=Gvermi12224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at ScGOVlb_3404:3903534..3904733+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ctgtcAAACCAAAACCTCTCCGTCGCCAGTGACGTGTCGTCCAACCCCTT
GTCCGTGTCTTCGCCCGACTCCAATTCGGCCTCCACCGACCTAGACTGGA
GCACCGCCAAGGCAGAGCCCCAGGCGCACAGCCCGAGCAAAACCTCCGCG
CGAAACGCCCCGCACCCGCCGCGCAATTCGACTCCGTGCATCAACGACTT
GTCGCCAGAGCCGCCGAAGAGCCATACGCGCCGTTGCCGAGAAAAGGTCA
CCCGACAGTTTGAAAATCTGCTGCAAGTTCTGCCCCCGCCGCCCCGAGGC
GTCGAGGTCAGGCACAAGGCTCAGATCCTTGATTACACCATCAGTGTGTT
TCAGCGTCTGTTGGCGCGGCGCACTTCGCTGCAGACCCACATTGCACTGG
CTTCGAACCAGTCCGTGCGTGACTGGGCCAACTCCACCATGGCCAAGGCC
CTGGCGTTGCTCAAATCGAACCCTGCCTCCGACCCCCCGTCAATATCTTC
GCTGGCGGATCCTTTCATGCGCTTTTATTGCGTCAAGAACTCGTGGGCCT
ATGCCGAAACATGGATCACGTCTTATGAAAGCACGCACGCCTCTCTGCGC
TCTTGTTTTGTCAACGCGCAGCATTCGCACCTGTCGAACACTCTCAATGC
GTTTGCCAGTTCCTCTAAGGCTCGCTATCAGTCTCCTTGCAGCGTTGTCA
CCGGCATCATTTCGCGTGTTCGTCAAACAAGGCGTCCCGAATGGCTTTCA
GATCTCCCGTCTGATCAGTCCGTATTTGATCGAGCGGGTGTGGCGCGCAA
GTCTAACGTCAACGTTGCGCTGGCAATACCGGTGATTGCTGCCAACAAGT
GCCTTGCCGTCATGCTTTTCGCAGATGTGACATCGAAGCCCTACTCTGCA
CATGCCGTTGATCAAGTGTTCCAGTACGCGAGTATACTGGCCGAGTCTTT
TGTTCAGCACTCAAGGGGGGCTCCTTCAATGCAGCAACCTACCGTGGCAA
TAACATGCGGTGGACAACTTGTCTTGAACCCTGGAGTTAGCATGGATGCG
GAGTCCGGTTTACAGGCTTTTGCTAATGCTGAGGCGGATATTTGTACCCC
TCATGGATGGCCAAGCGCAGCTCTAATGATCCCGCAAGCGACGCAAGGAT
CCCCAAAGAGTTTCTTGGAAGAATCTCAACTTGTAAGAATGAAATACTGA

protein sequence of Gvermi12224.t1

>Gvermi12224.t1 ID=Gvermi12224.t1|Name=Gvermi12224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=400bp
LSNQNLSVASDVSSNPLSVSSPDSNSASTDLDWSTAKAEPQAHSPSKTSA
RNAPHPPRNSTPCINDLSPEPPKSHTRRCREKVTRQFENLLQVLPPPPRG
VEVRHKAQILDYTISVFQRLLARRTSLQTHIALASNQSVRDWANSTMAKA
LALLKSNPASDPPSISSLADPFMRFYCVKNSWAYAETWITSYESTHASLR
SCFVNAQHSHLSNTLNAFASSSKARYQSPCSVVTGIISRVRQTRRPEWLS
DLPSDQSVFDRAGVARKSNVNVALAIPVIAANKCLAVMLFADVTSKPYSA
HAVDQVFQYASILAESFVQHSRGAPSMQQPTVAITCGGQLVLNPGVSMDA
ESGLQAFANAEADICTPHGWPSAALMIPQATQGSPKSFLEESQLVRMKY*

mRNA from alignment at ScGOVlb_3404:3903534..3904733+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12224.t1 ID=Gvermi12224.t1|Name=Gvermi12224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at ScGOVlb_3404:3903534..3904733+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgtcAAACCAAAACCTCTCCGTCGCCAGTGACGTGTCGTCCAACCCCTT
GTCCGTGTCTTCGCCCGACTCCAATTCGGCCTCCACCGACCTAGACTGGA
GCACCGCCAAGGCAGAGCCCCAGGCGCACAGCCCGAGCAAAACCTCCGCG
CGAAACGCCCCGCACCCGCCGCGCAATTCGACTCCGTGCATCAACGACTT
GTCGCCAGAGCCGCCGAAGAGCCATACGCGCCGTTGCCGAGAAAAGGTCA
CCCGACAGTTTGAAAATCTGCTGCAAGTTCTGCCCCCGCCGCCCCGAGGC
GTCGAGGTCAGGCACAAGGCTCAGATCCTTGATTACACCATCAGTGTGTT
TCAGCGTCTGTTGGCGCGGCGCACTTCGCTGCAGACCCACATTGCACTGG
CTTCGAACCAGTCCGTGCGTGACTGGGCCAACTCCACCATGGCCAAGGCC
CTGGCGTTGCTCAAATCGAACCCTGCCTCCGACCCCCCGTCAATATCTTC
GCTGGCGGATCCTTTCATGCGCTTTTATTGCGTCAAGAACTCGTGGGCCT
ATGCCGAAACATGGATCACGTCTTATGAAAGCACGCACGCCTCTCTGCGC
TCTTGTTTTGTCAACGCGCAGCATTCGCACCTGTCGAACACTCTCAATGC
GTTTGCCAGTTCCTCTAAGGCTCGCTATCAGTCTCCTTGCAGCGTTGTCA
CCGGCATCATTTCGCGTGTTCGTCAAACAAGGCGTCCCGAATGGCTTTCA
GATCTCCCGTCTGATCAGTCCGTATTTGATCGAGCGGGTGTGGCGCGCAA
GTCTAACGTCAACGTTGCGCTGGCAATACCGGTGATTGCTGCCAACAAGT
GCCTTGCCGTCATGCTTTTCGCAGATGTGACATCGAAGCCCTACTCTGCA
CATGCCGTTGATCAAGTGTTCCAGTACGCGAGTATACTGGCCGAGTCTTT
TGTTCAGCACTCAAGGGGGGCTCCTTCAATGCAGCAACCTACCGTGGCAA
TAACATGCGGTGGACAACTTGTCTTGAACCCTGGAGTTAGCATGGATGCG
GAGTCCGGTTTACAGGCTTTTGCTAATGCTGAGGCGGATATTTGTACCCC
TCATGGATGGCCAAGCGCAGCTCTAATGATCCCGCAAGCGACGCAAGGAT
CCCCAAAGAGTTTCTTGGAAGAATCTCAACTTGTAAGAATGAAATACTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3903534..3904733+

>Gvermi12224.t1 ID=Gvermi12224.t1|Name=Gvermi12224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1200bp|location=Sequence derived from alignment at ScGOVlb_3404:3903534..3904733+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgtcAAACCAAAACCTCTCCGTCGCCAGTGACGTGTCGTCCAACCCCTT
GTCCGTGTCTTCGCCCGACTCCAATTCGGCCTCCACCGACCTAGACTGGA
GCACCGCCAAGGCAGAGCCCCAGGCGCACAGCCCGAGCAAAACCTCCGCG
CGAAACGCCCCGCACCCGCCGCGCAATTCGACTCCGTGCATCAACGACTT
GTCGCCAGAGCCGCCGAAGAGCCATACGCGCCGTTGCCGAGAAAAGGTCA
CCCGACAGTTTGAAAATCTGCTGCAAGTTCTGCCCCCGCCGCCCCGAGGC
GTCGAGGTCAGGCACAAGGCTCAGATCCTTGATTACACCATCAGTGTGTT
TCAGCGTCTGTTGGCGCGGCGCACTTCGCTGCAGACCCACATTGCACTGG
CTTCGAACCAGTCCGTGCGTGACTGGGCCAACTCCACCATGGCCAAGGCC
CTGGCGTTGCTCAAATCGAACCCTGCCTCCGACCCCCCGTCAATATCTTC
GCTGGCGGATCCTTTCATGCGCTTTTATTGCGTCAAGAACTCGTGGGCCT
ATGCCGAAACATGGATCACGTCTTATGAAAGCACGCACGCCTCTCTGCGC
TCTTGTTTTGTCAACGCGCAGCATTCGCACCTGTCGAACACTCTCAATGC
GTTTGCCAGTTCCTCTAAGGCTCGCTATCAGTCTCCTTGCAGCGTTGTCA
CCGGCATCATTTCGCGTGTTCGTCAAACAAGGCGTCCCGAATGGCTTTCA
GATCTCCCGTCTGATCAGTCCGTATTTGATCGAGCGGGTGTGGCGCGCAA
GTCTAACGTCAACGTTGCGCTGGCAATACCGGTGATTGCTGCCAACAAGT
GCCTTGCCGTCATGCTTTTCGCAGATGTGACATCGAAGCCCTACTCTGCA
CATGCCGTTGATCAAGTGTTCCAGTACGCGAGTATACTGGCCGAGTCTTT
TGTTCAGCACTCAAGGGGGGCTCCTTCAATGCAGCAACCTACCGTGGCAA
TAACATGCGGTGGACAACTTGTCTTGAACCCTGGAGTTAGCATGGATGCG
GAGTCCGGTTTACAGGCTTTTGCTAATGCTGAGGCGGATATTTGTACCCC
TCATGGATGGCCAAGCGCAGCTCTAATGATCCCGCAAGCGACGCAAGGAT
CCCCAAAGAGTTTCTTGGAAGAATCTCAACTTGTAAGAATGAAATACTGA