Gvermi12171.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12171.t1
Unique NameGvermi12171.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length290
Homology
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BLAST of Gvermi12171.t1 vs. uniprot
Match: A0A2V3J5N0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5N0_9FLOR)

HSP 1 Score: 169 bits (429), Expect = 7.640e-47
Identity = 88/184 (47.83%), Postives = 124/184 (67.39%), Query Frame = 0 
Query:    9 QNGVARPASVPLSAEPPKKKSRAAHLIPKLTVGDFSETSFQDLIKIGRKAKARGKPREGHEAKALGDLLRNVSLWAKEVAPQYSMSEFIFASQALGTNRSLKPMLANLRLAEFREVNAEFEGIPSVDQPVVDQAVGSDLNFTDTGVKVMAEAPPDEMDALEWSMVPSDQWEEEDVMMDRMEMEM 192
            Q G  RP+    S+EPPKKK RAAHL+PKL+  DF+  + +D+IKIGR+ KARG P+ G+EA+AL  LLR ++ WAK+VAPQYS+ EF+FASQA+GTNRSL+P+LAN RLAE REVNAE                         G +++A+ PP   ++  W+  P+D WE++D ++ ++EM++
Sbjct:   10 QVGQTRPSQPLSSSEPPKKKHRAAHLMPKLSADDFTIKAIEDVIKIGRRTKARGPPKPGNEAQALSSLLRRMTAWAKQVAPQYSLPEFMFASQAIGTNRSLRPILANFRLAELREVNAEXXXXXXXXXXXXXXXXXXXXXXQTDG-QIVADVPPPGFESTTWNDEPNDGWEDDDALVAQLEMDI 192
The following BLAST results are available for this feature:
BLAST of Gvermi12171.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J5N0_9FLOR7.640e-4747.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012923Chromosome segregation in meiosis protein 3PFAMPF07962Swi3coord: 57..119
e-value: 2.9E-7
score: 30.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..265
NoneNo IPR availablePANTHERPTHR13220:SF11TIMELESS-INTERACTING PROTEINcoord: 21..272
IPR040038TIPIN/Csm3/Swi3PANTHERPTHR13220TIMELESS INTERACTING-RELATEDcoord: 21..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3658318..3659187 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12171.t1Gvermi12171.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3658318..3659187 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12171.t1 ID=Gvermi12171.t1|Name=Gvermi12171.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=290bp
MSAQAISAQNGVARPASVPLSAEPPKKKSRAAHLIPKLTVGDFSETSFQD
LIKIGRKAKARGKPREGHEAKALGDLLRNVSLWAKEVAPQYSMSEFIFAS
QALGTNRSLKPMLANLRLAEFREVNAEFEGIPSVDQPVVDQAVGSDLNFT
DTGVKVMAEAPPDEMDALEWSMVPSDQWEEEDVMMDRMEMEMNTIQPKQV
VSHQNTAKSVAAAVQNSDEAHSAQNDERHEKSRSEIPQLQQEPDSLIELR
QSHEENEEVRKTTADVETHSQQNIHKSDGGESNIDPCSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012923Csm3
IPR040038TIPIN/Csm3/Swi3