Gvermi11533.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11533.t1
Unique NameGvermi11533.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:752894..754177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11533Gvermi11533Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 752894..754177 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11533.t1.start1Gvermi11533.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 752894..752896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11533.t1.CDS1Gvermi11533.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 752894..754177 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11533.t1.exon1Gvermi11533.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 752894..754177 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11533.t1.stop1Gvermi11533.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 754175..754177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11533.t1Gvermi11533.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 752894..754177 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11533.t1 ID=Gvermi11533.t1|Name=Gvermi11533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=428bp
MFKARIKRFSTTSYLPNTFCHSSPTSAVKELTGSPGSAVMNASPDKARNG
KLLRCLKCNATVPRRASRLRKWIDFFFLYLIGMYELLRQWLCTVRIRDDY
VIQFYKDIDVRKPIIVMSGVTSGIGSELMRHFLATSAHVIALSYHPRPAF
NRKYTMLTVDFESEESTLAAAKDLIALLRHVSQDRDVIFVHCAAVYNPPD
ANDSNSVQRTLLINTLLPAAFIESISSAINGMICIGSSSQKVSPNLKQGC
ILTAARSPYAAYPLSKLLNLVHATDWKKRSSKPCIVIHPGIVATKLYQNE
SGIVGAVLRLFVYYFAWDVETSALRILHLLEASGFLETMGRCSRREDFLN
STDYSGVYWDSVSLKASSIPREVHKYYLRGLARHILQITEQNFQQISQTP
SGVAESLAVRHRDLTPLGEKQTAPMQS*
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spliced messenger RNA

>Gvermi11533.t1 ID=Gvermi11533.t1|Name=Gvermi11533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_3404:752894..754177+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGGCCCGAATTAAGCGGTTTTCGACGACGTCCTATTTGCCAAA
TACGTTTTGCCATTCGTCTCCGACATCTGCAGTGAAAGAGCTCACCGGCT
CGCCCGGGTCAGCAGTAATGAATGCATCTCCAGACAAAGCTCGGAATGGA
AAACTGCTGCGATGTTTGAAGTGCAACGCCACTGTGCCAAGACGAGCATC
AAGGCTGCGGAAATGGATTGACTTTTTCTTCTTGTATCTCATAGGAATGT
ACGAGTTGCTGCGTCAATGGCTGTGCACTGTTCGAATCCGTGACGACTAT
GTCATTCAGTTTTACAAAGATATTGATGTCCGTAAACCTATCATTGTTAT
GAGTGGAGTTACGTCAGGCATCGGAAGCGAGTTGATGCGCCATTTTCTTG
CCACGTCAGCTCATGTGATAGCCCTCAGTTATCATCCTCGTCCTGCCTTT
AACCGTAAGTACACAATGCTAACTGTCGACTTCGAATCAGAGGAGAGCAC
TCTTGCTGCAGCAAAAGATCTGATCGCACTGCTACGGCATGTATCCCAGG
ATCGCGATGTAATCTTTGTGCACTGCGCAGCCGTTTACAATCCCCCCGAT
GCAAACGACTCAAATTCGGTACAACGAACGCTTCTCATCAACACGCTATT
GCCAGCGGCCTTCATTGAGTCCATTAGCAGTGCGATTAATGGGATGATAT
GCATTGGGTCATCATCCCAAAAAGTATCTCCAAATCTCAAACAAGGTTGC
ATACTAACCGCGGCTCGATCGCCTTATGCAGCCTACCCACTTTCGAAGTT
ACTCAATTTGGTCCATGCGACAGATTGGAAAAAACGCTCATCAAAGCCGT
GCATTGTCATACATCCCGGAATAGTAGCCACGAAGTTGTACCAAAACGAA
TCAGGAATTGTTGGCGCAGTTCTTCGCTTGTTTGTGTACTATTTTGCTTG
GGATGTTGAAACATCCGCGTTGAGAATCTTGCACTTGTTGGAAGCTTCAG
GATTCCTTGAAACAATGGGGCGCTGCTCCAGGCGAGAAGATTTTCTCAAT
AGCACGGATTACAGCGGCGTCTACTGGGACTCTGTATCTCTGAAGGCATC
CTCTATCCCTCGAGAAGTCCACAAATATTACCTGCGCGGATTGGCGAGGC
ACATTCTCCAAATAACGGAACAAAACTTTCAACAAATATCCCAAACTCCG
AGTGGAGTGGCGGAATCGTTAGCTGTGCGTCACAGAGACTTGACACCTTT
AGGCGAGAAACAAACTGCGCCAATGCAGTCGTGA
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protein sequence of Gvermi11533.t1

>Gvermi11533.t1 ID=Gvermi11533.t1|Name=Gvermi11533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
MFKARIKRFSTTSYLPNTFCHSSPTSAVKELTGSPGSAVMNASPDKARNG
KLLRCLKCNATVPRRASRLRKWIDFFFLYLIGMYELLRQWLCTVRIRDDY
VIQFYKDIDVRKPIIVMSGVTSGIGSELMRHFLATSAHVIALSYHPRPAF
NRKYTMLTVDFESEESTLAAAKDLIALLRHVSQDRDVIFVHCAAVYNPPD
ANDSNSVQRTLLINTLLPAAFIESISSAINGMICIGSSSQKVSPNLKQGC
ILTAARSPYAAYPLSKLLNLVHATDWKKRSSKPCIVIHPGIVATKLYQNE
SGIVGAVLRLFVYYFAWDVETSALRILHLLEASGFLETMGRCSRREDFLN
STDYSGVYWDSVSLKASSIPREVHKYYLRGLARHILQITEQNFQQISQTP
SGVAESLAVRHRDLTPLGEKQTAPMQS*
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mRNA from alignment at ScGOVlb_3404:752894..754177+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11533.t1 ID=Gvermi11533.t1|Name=Gvermi11533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_3404:752894..754177+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAAGGCCCGAATTAAGCGGTTTTCGACGACGTCCTATTTGCCAAA
TACGTTTTGCCATTCGTCTCCGACATCTGCAGTGAAAGAGCTCACCGGCT
CGCCCGGGTCAGCAGTAATGAATGCATCTCCAGACAAAGCTCGGAATGGA
AAACTGCTGCGATGTTTGAAGTGCAACGCCACTGTGCCAAGACGAGCATC
AAGGCTGCGGAAATGGATTGACTTTTTCTTCTTGTATCTCATAGGAATGT
ACGAGTTGCTGCGTCAATGGCTGTGCACTGTTCGAATCCGTGACGACTAT
GTCATTCAGTTTTACAAAGATATTGATGTCCGTAAACCTATCATTGTTAT
GAGTGGAGTTACGTCAGGCATCGGAAGCGAGTTGATGCGCCATTTTCTTG
CCACGTCAGCTCATGTGATAGCCCTCAGTTATCATCCTCGTCCTGCCTTT
AACCGTAAGTACACAATGCTAACTGTCGACTTCGAATCAGAGGAGAGCAC
TCTTGCTGCAGCAAAAGATCTGATCGCACTGCTACGGCATGTATCCCAGG
ATCGCGATGTAATCTTTGTGCACTGCGCAGCCGTTTACAATCCCCCCGAT
GCAAACGACTCAAATTCGGTACAACGAACGCTTCTCATCAACACGCTATT
GCCAGCGGCCTTCATTGAGTCCATTAGCAGTGCGATTAATGGGATGATAT
GCATTGGGTCATCATCCCAAAAAGTATCTCCAAATCTCAAACAAGGTTGC
ATACTAACCGCGGCTCGATCGCCTTATGCAGCCTACCCACTTTCGAAGTT
ACTCAATTTGGTCCATGCGACAGATTGGAAAAAACGCTCATCAAAGCCGT
GCATTGTCATACATCCCGGAATAGTAGCCACGAAGTTGTACCAAAACGAA
TCAGGAATTGTTGGCGCAGTTCTTCGCTTGTTTGTGTACTATTTTGCTTG
GGATGTTGAAACATCCGCGTTGAGAATCTTGCACTTGTTGGAAGCTTCAG
GATTCCTTGAAACAATGGGGCGCTGCTCCAGGCGAGAAGATTTTCTCAAT
AGCACGGATTACAGCGGCGTCTACTGGGACTCTGTATCTCTGAAGGCATC
CTCTATCCCTCGAGAAGTCCACAAATATTACCTGCGCGGATTGGCGAGGC
ACATTCTCCAAATAACGGAACAAAACTTTCAACAAATATCCCAAACTCCG
AGTGGAGTGGCGGAATCGTTAGCTGTGCGTCACAGAGACTTGACACCTTT
AGGCGAGAAACAAACTGCGCCAATGCAGTCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:752894..754177+

>Gvermi11533.t1 ID=Gvermi11533.t1|Name=Gvermi11533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1284bp|location=Sequence derived from alignment at ScGOVlb_3404:752894..754177+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAAGGCCCGAATTAAGCGGTTTTCGACGACGTCCTATTTGCCAAA
TACGTTTTGCCATTCGTCTCCGACATCTGCAGTGAAAGAGCTCACCGGCT
CGCCCGGGTCAGCAGTAATGAATGCATCTCCAGACAAAGCTCGGAATGGA
AAACTGCTGCGATGTTTGAAGTGCAACGCCACTGTGCCAAGACGAGCATC
AAGGCTGCGGAAATGGATTGACTTTTTCTTCTTGTATCTCATAGGAATGT
ACGAGTTGCTGCGTCAATGGCTGTGCACTGTTCGAATCCGTGACGACTAT
GTCATTCAGTTTTACAAAGATATTGATGTCCGTAAACCTATCATTGTTAT
GAGTGGAGTTACGTCAGGCATCGGAAGCGAGTTGATGCGCCATTTTCTTG
CCACGTCAGCTCATGTGATAGCCCTCAGTTATCATCCTCGTCCTGCCTTT
AACCGTAAGTACACAATGCTAACTGTCGACTTCGAATCAGAGGAGAGCAC
TCTTGCTGCAGCAAAAGATCTGATCGCACTGCTACGGCATGTATCCCAGG
ATCGCGATGTAATCTTTGTGCACTGCGCAGCCGTTTACAATCCCCCCGAT
GCAAACGACTCAAATTCGGTACAACGAACGCTTCTCATCAACACGCTATT
GCCAGCGGCCTTCATTGAGTCCATTAGCAGTGCGATTAATGGGATGATAT
GCATTGGGTCATCATCCCAAAAAGTATCTCCAAATCTCAAACAAGGTTGC
ATACTAACCGCGGCTCGATCGCCTTATGCAGCCTACCCACTTTCGAAGTT
ACTCAATTTGGTCCATGCGACAGATTGGAAAAAACGCTCATCAAAGCCGT
GCATTGTCATACATCCCGGAATAGTAGCCACGAAGTTGTACCAAAACGAA
TCAGGAATTGTTGGCGCAGTTCTTCGCTTGTTTGTGTACTATTTTGCTTG
GGATGTTGAAACATCCGCGTTGAGAATCTTGCACTTGTTGGAAGCTTCAG
GATTCCTTGAAACAATGGGGCGCTGCTCCAGGCGAGAAGATTTTCTCAAT
AGCACGGATTACAGCGGCGTCTACTGGGACTCTGTATCTCTGAAGGCATC
CTCTATCCCTCGAGAAGTCCACAAATATTACCTGCGCGGATTGGCGAGGC
ACATTCTCCAAATAACGGAACAAAACTTTCAACAAATATCCCAAACTCCG
AGTGGAGTGGCGGAATCGTTAGCTGTGCGTCACAGAGACTTGACACCTTT
AGGCGAGAAACAAACTGCGCCAATGCAGTCGTGA
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