Gvermi12226.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12226.t1
Unique Name	Gvermi12226.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	667

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3906347..3908347 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3847.GLYMA11G14190.2
PFAMs	MMR_HSR1,NOG1,NOGCT
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K06943
KEGG Pathway	ko03008,map03008
GOs	GO:0005575,GO:0016020
Evalue	2.22e-215
EggNOG OGs	COG1084@1\|root,KOG1490@2759\|Eukaryota,37J09@33090\|Viridiplantae,3GA59@35493\|Streptophyta,4JER4@91835\|fabids
Description	Involved in the biogenesis of the 60S ribosomal subunit
COG category	S
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12226	Gvermi12226	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3906347..3908347 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12226.t1.start1	Gvermi12226.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3906347..3906349 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12226.t1.CDS1	Gvermi12226.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3906347..3908347 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12226.t1.exon1	Gvermi12226.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3906347..3908347 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12226.t1.stop1	Gvermi12226.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3908345..3908347 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12226.t1	Gvermi12226.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3906347..3908347 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3906347..3908347+
coding sequence from alignment at ScGOVlb_3404:3906347..3908347+

mRNA sequence

>Gvermi12226.t1 ID=Gvermi12226.t1|Name=Gvermi12226.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=667bp
MVLVNFKTITVVPAGDALIDNVLSKTQRKTPTVVHKGYAIGRIRDFYMRK
VKFSQQTFHDKLSQILNDFPKFDELHPFYADLLNVLYDRDHYKLALGQLA
TARSLIDGIARDYVRLLKYADSLYRCKCLKRAALGRMCTLVSRHKKNLAY
LEQVRQHLARLPSIDPATRTLLIAGFPNVGKSSFINKITRADVDVQPYAF
TTKSLFVGHCDYKYLRWQVIDTPGILDHELEARNTIEMQSITALAHLRAC
VLFFIDPSEQCGYSLEKQHSLFKSIMPLFANKPVIVVANKSDLGWESSLD
DSGRELLESFKTDSGGRAILMKMSTHEEEGVTEVKNTACEKLLEARVESK
VRGKKVQKVLNRLHLATPKSTSEERRPNIPVSVLAKRAAQSQMTDDTELD
DTDVDMGTEGSGPGGRKLERDLQEENGGAGVYSMDWRKLYQLRKKEWAYD
VMPEIVDGKNIADYVDPDIGAKLNQLELEEEAREAVRDVTNDAEVGGFRL
VTDEEKNVVRQIKDRKSLIKQGSVREKNAHKHRSALQRNKVLTRRSRLQE
HLEGLGLEKDEASDLVDRAASRRGVKRSRSESVAVSMARETSRIRSASKS
RSVSIAPNDGFSSPHQKAKAMELARKKLKTGVAKYARKGVADRSIPSKLP
KHLFSGKRGIGKTDRR*

spliced messenger RNA

>Gvermi12226.t1 ID=Gvermi12226.t1|Name=Gvermi12226.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at ScGOVlb_3404:3906347..3908347+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTGGTAAACTTCAAGACTATAACTGTGGTACCTGCAGGAGACGC
TCTGATCGACAATGTGTTGTCCAAAACTCAACGAAAGACGCCCACCGTGG
TACACAAAGGATACGCGATTGGTCGCATTCGCGATTTTTATATGCGCAAA
GTGAAGTTCTCGCAACAAACGTTTCATGACAAATTATCGCAGATTCTCAA
CGACTTTCCAAAGTTTGATGAACTTCATCCATTTTATGCTGATTTGCTCA
ACGTTCTATACGACCGAGATCACTACAAGCTTGCTCTCGGACAACTCGCA
ACTGCACGGTCCTTGATTGACGGCATAGCCAGAGACTACGTGCGGCTTTT
GAAGTATGCAGATTCGTTGTATCGTTGCAAATGTCTCAAACGTGCGGCCC
TCGGGCGAATGTGCACTCTTGTTTCGCGTCACAAGAAAAATCTTGCGTAT
TTGGAACAAGTGCGACAACATCTGGCCCGCCTCCCCTCCATCGATCCGGC
TACGAGAACTCTGCTGATTGCTGGATTTCCAAACGTGGGCAAGAGCTCCT
TTATAAACAAAATCACTAGGGCGGATGTCGATGTGCAGCCGTACGCATTC
ACAACCAAGTCGCTGTTTGTTGGACATTGTGATTACAAGTACCTCAGATG
GCAAGTGATTGACACACCGGGAATTTTGGATCACGAGTTGGAAGCCCGTA
ATACAATAGAGATGCAGAGCATTACTGCGCTAGCTCACTTGCGAGCATGT
GTTTTGTTCTTTATCGACCCCAGCGAGCAATGCGGCTATTCCCTCGAGAA
GCAGCACTCCTTGTTTAAGAGTATCATGCCCTTATTTGCAAACAAGCCAG
TTATCGTGGTTGCAAATAAAAGCGATCTTGGATGGGAATCAAGCCTCGAC
GACTCAGGGCGGGAATTGCTGGAGTCGTTTAAAACTGATTCAGGAGGCAG
AGCGATACTAATGAAGATGTCTACCCATGAAGAGGAAGGCGTGACTGAAG
TGAAGAACACAGCGTGTGAAAAGCTCCTCGAAGCTAGAGTTGAGTCAAAG
GTTCGGGGAAAGAAGGTACAAAAGGTTCTCAACCGATTGCATCTTGCAAC
CCCGAAGTCCACCTCTGAAGAGAGAAGACCAAATATCCCTGTTTCTGTGC
TAGCAAAAAGGGCTGCGCAAAGCCAAATGACAGATGATACTGAATTGGAT
GATACCGACGTGGACATGGGAACAGAGGGAAGTGGTCCCGGGGGACGGAA
GCTTGAAAGAGACTTGCAAGAAGAAAACGGAGGCGCTGGTGTTTATTCTA
TGGACTGGCGCAAGCTCTACCAACTTCGGAAAAAGGAATGGGCATATGAT
GTCATGCCAGAAATTGTTGATGGAAAGAATATCGCAGACTATGTTGATCC
CGATATTGGAGCCAAGCTTAATCAGCTTGAGCTTGAAGAAGAAGCTCGAG
AAGCTGTGCGAGACGTGACAAATGACGCTGAAGTTGGTGGATTCCGCCTT
GTCACAGACGAAGAGAAAAACGTTGTGCGGCAAATAAAGGATCGCAAATC
TCTCATCAAACAAGGCTCCGTCCGAGAGAAGAATGCACATAAACACCGAA
GCGCACTGCAAAGGAATAAGGTCCTGACTCGCCGTTCCCGGCTTCAGGAA
CATCTCGAGGGTTTGGGACTTGAAAAGGACGAAGCGTCTGATTTGGTAGA
TCGTGCCGCTAGTCGGAGAGGGGTGAAACGATCAAGGTCTGAAAGTGTAG
CAGTTTCGATGGCTCGTGAAACCAGTAGGATACGGTCGGCTTCCAAATCA
CGCTCAGTAAGCATCGCACCGAACGATGGCTTTTCAAGCCCTCATCAAAA
GGCGAAGGCAATGGAATTGGCGAGGAAAAAACTCAAGACCGGCGTCGCCA
AGTACGCACGGAAGGGAGTTGCAGATCGGAGTATTCCCTCAAAACTTCCC
AAGCACTTGTTCAGTGGAAAGCGTGGAATTGGAAAGACAGATAGAAGATA
G

protein sequence of Gvermi12226.t1

>Gvermi12226.t1 ID=Gvermi12226.t1|Name=Gvermi12226.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=667bp
MVLVNFKTITVVPAGDALIDNVLSKTQRKTPTVVHKGYAIGRIRDFYMRK
VKFSQQTFHDKLSQILNDFPKFDELHPFYADLLNVLYDRDHYKLALGQLA
TARSLIDGIARDYVRLLKYADSLYRCKCLKRAALGRMCTLVSRHKKNLAY
LEQVRQHLARLPSIDPATRTLLIAGFPNVGKSSFINKITRADVDVQPYAF
TTKSLFVGHCDYKYLRWQVIDTPGILDHELEARNTIEMQSITALAHLRAC
VLFFIDPSEQCGYSLEKQHSLFKSIMPLFANKPVIVVANKSDLGWESSLD
DSGRELLESFKTDSGGRAILMKMSTHEEEGVTEVKNTACEKLLEARVESK
VRGKKVQKVLNRLHLATPKSTSEERRPNIPVSVLAKRAAQSQMTDDTELD
DTDVDMGTEGSGPGGRKLERDLQEENGGAGVYSMDWRKLYQLRKKEWAYD
VMPEIVDGKNIADYVDPDIGAKLNQLELEEEAREAVRDVTNDAEVGGFRL
VTDEEKNVVRQIKDRKSLIKQGSVREKNAHKHRSALQRNKVLTRRSRLQE
HLEGLGLEKDEASDLVDRAASRRGVKRSRSESVAVSMARETSRIRSASKS
RSVSIAPNDGFSSPHQKAKAMELARKKLKTGVAKYARKGVADRSIPSKLP
KHLFSGKRGIGKTDRR*

mRNA from alignment at ScGOVlb_3404:3906347..3908347+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12226.t1 ID=Gvermi12226.t1|Name=Gvermi12226.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at ScGOVlb_3404:3906347..3908347+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTTGGTAAACTTCAAGACTATAACTGTGGTACCTGCAGGAGACGC
TCTGATCGACAATGTGTTGTCCAAAACTCAACGAAAGACGCCCACCGTGG
TACACAAAGGATACGCGATTGGTCGCATTCGCGATTTTTATATGCGCAAA
GTGAAGTTCTCGCAACAAACGTTTCATGACAAATTATCGCAGATTCTCAA
CGACTTTCCAAAGTTTGATGAACTTCATCCATTTTATGCTGATTTGCTCA
ACGTTCTATACGACCGAGATCACTACAAGCTTGCTCTCGGACAACTCGCA
ACTGCACGGTCCTTGATTGACGGCATAGCCAGAGACTACGTGCGGCTTTT
GAAGTATGCAGATTCGTTGTATCGTTGCAAATGTCTCAAACGTGCGGCCC
TCGGGCGAATGTGCACTCTTGTTTCGCGTCACAAGAAAAATCTTGCGTAT
TTGGAACAAGTGCGACAACATCTGGCCCGCCTCCCCTCCATCGATCCGGC
TACGAGAACTCTGCTGATTGCTGGATTTCCAAACGTGGGCAAGAGCTCCT
TTATAAACAAAATCACTAGGGCGGATGTCGATGTGCAGCCGTACGCATTC
ACAACCAAGTCGCTGTTTGTTGGACATTGTGATTACAAGTACCTCAGATG
GCAAGTGATTGACACACCGGGAATTTTGGATCACGAGTTGGAAGCCCGTA
ATACAATAGAGATGCAGAGCATTACTGCGCTAGCTCACTTGCGAGCATGT
GTTTTGTTCTTTATCGACCCCAGCGAGCAATGCGGCTATTCCCTCGAGAA
GCAGCACTCCTTGTTTAAGAGTATCATGCCCTTATTTGCAAACAAGCCAG
TTATCGTGGTTGCAAATAAAAGCGATCTTGGATGGGAATCAAGCCTCGAC
GACTCAGGGCGGGAATTGCTGGAGTCGTTTAAAACTGATTCAGGAGGCAG
AGCGATACTAATGAAGATGTCTACCCATGAAGAGGAAGGCGTGACTGAAG
TGAAGAACACAGCGTGTGAAAAGCTCCTCGAAGCTAGAGTTGAGTCAAAG
GTTCGGGGAAAGAAGGTACAAAAGGTTCTCAACCGATTGCATCTTGCAAC
CCCGAAGTCCACCTCTGAAGAGAGAAGACCAAATATCCCTGTTTCTGTGC
TAGCAAAAAGGGCTGCGCAAAGCCAAATGACAGATGATACTGAATTGGAT
GATACCGACGTGGACATGGGAACAGAGGGAAGTGGTCCCGGGGGACGGAA
GCTTGAAAGAGACTTGCAAGAAGAAAACGGAGGCGCTGGTGTTTATTCTA
TGGACTGGCGCAAGCTCTACCAACTTCGGAAAAAGGAATGGGCATATGAT
GTCATGCCAGAAATTGTTGATGGAAAGAATATCGCAGACTATGTTGATCC
CGATATTGGAGCCAAGCTTAATCAGCTTGAGCTTGAAGAAGAAGCTCGAG
AAGCTGTGCGAGACGTGACAAATGACGCTGAAGTTGGTGGATTCCGCCTT
GTCACAGACGAAGAGAAAAACGTTGTGCGGCAAATAAAGGATCGCAAATC
TCTCATCAAACAAGGCTCCGTCCGAGAGAAGAATGCACATAAACACCGAA
GCGCACTGCAAAGGAATAAGGTCCTGACTCGCCGTTCCCGGCTTCAGGAA
CATCTCGAGGGTTTGGGACTTGAAAAGGACGAAGCGTCTGATTTGGTAGA
TCGTGCCGCTAGTCGGAGAGGGGTGAAACGATCAAGGTCTGAAAGTGTAG
CAGTTTCGATGGCTCGTGAAACCAGTAGGATACGGTCGGCTTCCAAATCA
CGCTCAGTAAGCATCGCACCGAACGATGGCTTTTCAAGCCCTCATCAAAA
GGCGAAGGCAATGGAATTGGCGAGGAAAAAACTCAAGACCGGCGTCGCCA
AGTACGCACGGAAGGGAGTTGCAGATCGGAGTATTCCCTCAAAACTTCCC
AAGCACTTGTTCAGTGGAAAGCGTGGAATTGGAAAGACAGATAGAAGATA
G

Coding sequence (CDS) from alignment at ScGOVlb_3404:3906347..3908347+

>Gvermi12226.t1 ID=Gvermi12226.t1|Name=Gvermi12226.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2001bp|location=Sequence derived from alignment at ScGOVlb_3404:3906347..3908347+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTTGGTAAACTTCAAGACTATAACTGTGGTACCTGCAGGAGACGC
TCTGATCGACAATGTGTTGTCCAAAACTCAACGAAAGACGCCCACCGTGG
TACACAAAGGATACGCGATTGGTCGCATTCGCGATTTTTATATGCGCAAA
GTGAAGTTCTCGCAACAAACGTTTCATGACAAATTATCGCAGATTCTCAA
CGACTTTCCAAAGTTTGATGAACTTCATCCATTTTATGCTGATTTGCTCA
ACGTTCTATACGACCGAGATCACTACAAGCTTGCTCTCGGACAACTCGCA
ACTGCACGGTCCTTGATTGACGGCATAGCCAGAGACTACGTGCGGCTTTT
GAAGTATGCAGATTCGTTGTATCGTTGCAAATGTCTCAAACGTGCGGCCC
TCGGGCGAATGTGCACTCTTGTTTCGCGTCACAAGAAAAATCTTGCGTAT
TTGGAACAAGTGCGACAACATCTGGCCCGCCTCCCCTCCATCGATCCGGC
TACGAGAACTCTGCTGATTGCTGGATTTCCAAACGTGGGCAAGAGCTCCT
TTATAAACAAAATCACTAGGGCGGATGTCGATGTGCAGCCGTACGCATTC
ACAACCAAGTCGCTGTTTGTTGGACATTGTGATTACAAGTACCTCAGATG
GCAAGTGATTGACACACCGGGAATTTTGGATCACGAGTTGGAAGCCCGTA
ATACAATAGAGATGCAGAGCATTACTGCGCTAGCTCACTTGCGAGCATGT
GTTTTGTTCTTTATCGACCCCAGCGAGCAATGCGGCTATTCCCTCGAGAA
GCAGCACTCCTTGTTTAAGAGTATCATGCCCTTATTTGCAAACAAGCCAG
TTATCGTGGTTGCAAATAAAAGCGATCTTGGATGGGAATCAAGCCTCGAC
GACTCAGGGCGGGAATTGCTGGAGTCGTTTAAAACTGATTCAGGAGGCAG
AGCGATACTAATGAAGATGTCTACCCATGAAGAGGAAGGCGTGACTGAAG
TGAAGAACACAGCGTGTGAAAAGCTCCTCGAAGCTAGAGTTGAGTCAAAG
GTTCGGGGAAAGAAGGTACAAAAGGTTCTCAACCGATTGCATCTTGCAAC
CCCGAAGTCCACCTCTGAAGAGAGAAGACCAAATATCCCTGTTTCTGTGC
TAGCAAAAAGGGCTGCGCAAAGCCAAATGACAGATGATACTGAATTGGAT
GATACCGACGTGGACATGGGAACAGAGGGAAGTGGTCCCGGGGGACGGAA
GCTTGAAAGAGACTTGCAAGAAGAAAACGGAGGCGCTGGTGTTTATTCTA
TGGACTGGCGCAAGCTCTACCAACTTCGGAAAAAGGAATGGGCATATGAT
GTCATGCCAGAAATTGTTGATGGAAAGAATATCGCAGACTATGTTGATCC
CGATATTGGAGCCAAGCTTAATCAGCTTGAGCTTGAAGAAGAAGCTCGAG
AAGCTGTGCGAGACGTGACAAATGACGCTGAAGTTGGTGGATTCCGCCTT
GTCACAGACGAAGAGAAAAACGTTGTGCGGCAAATAAAGGATCGCAAATC
TCTCATCAAACAAGGCTCCGTCCGAGAGAAGAATGCACATAAACACCGAA
GCGCACTGCAAAGGAATAAGGTCCTGACTCGCCGTTCCCGGCTTCAGGAA
CATCTCGAGGGTTTGGGACTTGAAAAGGACGAAGCGTCTGATTTGGTAGA
TCGTGCCGCTAGTCGGAGAGGGGTGAAACGATCAAGGTCTGAAAGTGTAG
CAGTTTCGATGGCTCGTGAAACCAGTAGGATACGGTCGGCTTCCAAATCA
CGCTCAGTAAGCATCGCACCGAACGATGGCTTTTCAAGCCCTCATCAAAA
GGCGAAGGCAATGGAATTGGCGAGGAAAAAACTCAAGACCGGCGTCGCCA
AGTACGCACGGAAGGGAGTTGCAGATCGGAGTATTCCCTCAAAACTTCCC
AAGCACTTGTTCAGTGGAAAGCGTGGAATTGGAAAGACAGATAGAAGATA
G