Gvermi12173.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12173.t1
Unique NameGvermi12173.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length353
Homology
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A2V3J5I5_9FLOR (Myb-like protein I n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5I5_9FLOR)

HSP 1 Score: 276 bits (707), Expect = 6.290e-88
Identity = 184/367 (50.14%), Postives = 221/367 (60.22%), Query Frame = 0
Query:    1 MVDTVVAPNYDSIIDRQHKRIVQLEADLARCSSHIRKLKTRSHPSSSMYAAHDLARLHAAHMHAMLAMSPALHPIAAAHPLHVAAAAAAAAATNVPLMAPAN-------------AQPAAASTQLTGAHMFARAAAGPADDEDRAGKTRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREAKKRXXXXXXXXXXXXXXXXXSGDSAHHDEHKIAAEDAAESESTCPMDDTMVKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKLMNNITPASVNCDGGGMKKDSSLTNLADYDDFMRRITSVPEH--DRSEIFEPRHADLDVDILSDAQKNGQFDDSLLAEL 352
            M DT VAPNYDS+IDRQHKRI++LEADLA C+  IR LK+R    +S+Y AHDLARLHAA MHAMLAM+P L  +A AHPLH A             M                 A P   +T  + +++FARA  G +DDED+AGKTRYWTAKEHQQFLYAVKLFG KNYVAISQFVG+RTPKQVRTHAQKYQMKLEREAKKR                 +          I +EDAA+S +    +D  +                                  D+LM+ + PA V+  G G+KK+SSLTNLADYDDFMRRIT+V +   D S +F+  ++DLDVDIL  A K+  FDDSLLA+L
Sbjct:    1 MADTAVAPNYDSLIDRQHKRILELEADLASCTDQIRVLKSRGLDMASLYTAHDLARLHAAQMHAMLAMTP-LPALATAHPLHAAXXXXXXXXXXXAHMPXXXXXXXXXXXXXXXXASPR-LNTAPSTSNLFARARGGASDDEDKAGKTRYWTAKEHQQFLYAVKLFGPKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKKRRGQALATATASACNKPKTSTV-----RVIKSEDAAQSANVDCNEDVQMTSVS------------------------------DRLMSQVIPAPVSL-GSGLKKNSSLTNLADYDDFMRRITTVQDTRPDASGMFDHGNSDLDVDILDAASKSNHFDDSLLADL 329          
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A7S1TD26_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD26_9RHOD)

HSP 1 Score: 84.7 bits (208), Expect = 2.060e-14
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 0
Query:  134 KTRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREAKKRXXXXXXXXXXXXXXXXXSGDSAHHDEHKIAAEDA 225
            +TRYWT +EH++FL  VKL+G KNY+AIS+ V +RTPKQVRTHAQK+Q +LEREA K+                     +H DEH  A+E A
Sbjct:  247 QTRYWTPEEHERFLRGVKLYGDKNYIAISKIVVTRTPKQVRTHAQKFQKRLEREASKKRI-------------------SHTDEHSAASERA 319          
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A7S0BIZ1_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BIZ1_9RHOD)

HSP 1 Score: 77.4 bits (189), Expect = 1.760e-13
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 0
Query:  136 RYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREA 188
            RYWT +EH++FL   KL+G KNY AIS  VG+RTPKQVRTHAQKY+M+L RE+
Sbjct:    6 RYWTEEEHRKFLEGRKLYGPKNYAAISAVVGTRTPKQVRTHAQKYEMRLVRES 58          
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A7S1T4I5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4I5_9RHOD)

HSP 1 Score: 77.8 bits (190), Expect = 3.620e-13
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 0
Query:  127 DDEDRAGKTRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREAKKRXXXXXXXXXXXXXXXXXSGDSAHHDEHKIAAEDAAESESTCPMDDTMV 239
            DD  + G TRYW+ +EH +FL  V LFG KN+V I+  VG+RTP+QVRTH+QKY+++L R+                     +  SA   + K++++D    + TC  DD M+
Sbjct:   87 DDSRQEGTTRYWSKEEHDRFLKGVGLFGPKNFVEIAALVGTRTPQQVRTHSQKYEIRLMRKQ-----------------GTSTEQSASSQQMKLSSDDLNGFDPTCDADDLML 182          
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A6T6PSU7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6PSU7_9RHOD)

HSP 1 Score: 75.5 bits (184), Expect = 4.490e-12
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0
Query:  136 RYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREA 188
            RYWT +EH++FL   KL+G KNY AIS  V SRTPKQVRTHAQKY+M+L RE+
Sbjct:  111 RYWTEEEHRKFLEGRKLYGPKNYAAISAVVRSRTPKQVRTHAQKYEMRLVRES 163          
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A7S2ZYC5_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZYC5_9RHOD)

HSP 1 Score: 74.3 bits (181), Expect = 1.160e-11
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0
Query:  136 RYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREA 188
            RYWT +EH++FL   KL+G KNY AIS  V +RTPKQVRTHAQKY+M+L RE+
Sbjct:  112 RYWTEEEHRKFLEGRKLYGPKNYAAISAVVRTRTPKQVRTHAQKYEMRLVRES 164          
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A7S1XF31_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XF31_9RHOD)

HSP 1 Score: 69.7 bits (169), Expect = 4.910e-11
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 0
Query:  134 KTRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLERE 187
            ++RYWT +EHQ+F+ A++ FG K+  AIS FVG+R P QVRTHAQKY ++L++E
Sbjct:   70 QSRYWTPEEHQRFIEAIQKFGPKDVRAISNFVGTRNPTQVRTHAQKYFLRLQKE 123          
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A7S0ZBK5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZBK5_9RHOD)

HSP 1 Score: 72.4 bits (176), Expect = 5.660e-11
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0
Query:  132 AGKTRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREAKKR 191
            AG++RYWT  EH+ FL A+K++G K+   IS+FVG+R   QVRTH QKY MKL REAK+R
Sbjct:   71 AGQSRYWTNDEHRLFLEALKIYGHKDLRGISEFVGTRNMTQVRTHTQKYFMKLMREAKRR 130          
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A5J4Z933_PORPP (Myb-like protein I n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z933_PORPP)

HSP 1 Score: 74.7 bits (182), Expect = 5.940e-11
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0
Query:  130 DRAGKTRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREAKKR 191
            D A +TRYWT  EH +FL A   FG K YV+I+++VGSR+ KQVRTHAQKY  +LERE  +R
Sbjct:  422 DGAKQTRYWTQAEHDRFLQACAKFGEKAYVSIAEYVGSRSAKQVRTHAQKYAKRLEREHARR 483          
BLAST of Gvermi12173.t1 vs. uniprot
Match: A0A7S1H9F7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H9F7_HEMAN)

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-10
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 0
Query:  125 PADDEDRAGKTRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREAK 189
            P    +  G+TRYWTA+EHQ+F+ A+ L+G K+   I+ FVG+R   QVRTHAQKY +K+ RE+K
Sbjct:  283 PGQGAELTGQTRYWTAEEHQRFVDAIGLYGPKDVRQIANFVGTRNATQVRTHAQKYFLKISRESK 347          
The following BLAST results are available for this feature:
BLAST of Gvermi12173.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5I5_9FLOR6.290e-8850.14Myb-like protein I n=1 Tax=Gracilariopsis chorda T... [more]
A0A7S1TD26_9RHOD2.060e-1450.00Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S0BIZ1_9RHOD1.760e-1367.92Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S1T4I5_9RHOD3.620e-1338.05Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A6T6PSU7_9RHOD4.490e-1267.92Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZYC5_9RHOD1.160e-1166.04Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S1XF31_9RHOD4.910e-1157.41Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S0ZBK5_9RHOD5.660e-1160.00Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z933_PORPP5.940e-1159.68Myb-like protein I n=1 Tax=Porphyridium purpureum ... [more]
A0A7S1H9F7_HEMAN1.300e-1052.31Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 21..41
NoneNo IPR availableGENE3D1.10.10.60coord: 138..184
e-value: 2.3E-12
score: 48.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..230
NoneNo IPR availablePANTHERPTHR12802:SF125SUBFAMILY NOT NAMEDcoord: 106..274
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 106..274
IPR001005SANT/Myb domainSMARTSM00717santcoord: 134..183
e-value: 1.7E-10
score: 50.9
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 138..180
e-value: 5.51261E-11
score: 55.2742
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 137..180
e-value: 2.0E-11
score: 43.9
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 138..185
score: 13.701724
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 136..183
e-value: 4.1E-9
score: 34.6
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 135..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3662868..3663926 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12173.t1Gvermi12173.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3662868..3663926 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12173.t1 ID=Gvermi12173.t1|Name=Gvermi12173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=353bp
MVDTVVAPNYDSIIDRQHKRIVQLEADLARCSSHIRKLKTRSHPSSSMYA
AHDLARLHAAHMHAMLAMSPALHPIAAAHPLHVAAAAAAAAATNVPLMAP
ANAQPAAASTQLTGAHMFARAAAGPADDEDRAGKTRYWTAKEHQQFLYAV
KLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREAKKRRNQALAAAA
ASAAAATASGDSAHHDEHKIAAEDAAESESTCPMDDTMVKDEPTTALNDC
AFSPISHDGEDCVNEDVSVTNVNDKLMNNITPASVNCDGGGMKKDSSLTN
LADYDDFMRRITSVPEHDRSEIFEPRHADLDVDILSDAQKNGQFDDSLLA
EL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR006447Myb_dom_plants
IPR009057Homeobox-like_sf