Gvermi11539.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11539.t1
Unique NameGvermi11539.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length416
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:768484..769731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72664.XP_006416221.1
PFAMsCOPIIcoated_ERV,ERGIC_N
Max annot lvl35493|Streptophyta
KEGG koko:K20367
Evalue6.42e-88
EggNOG OGsCOG0445@1|root,KOG2667@2759|Eukaryota,37PCS@33090|Viridiplantae,3G91C@35493|Streptophyta
DescriptionEndoplasmic reticulum-Golgi intermediate compartment protein
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11539Gvermi11539Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 768484..769731 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11539.t1.stop1Gvermi11539.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 768484..768486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11539.t1.CDS1Gvermi11539.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 768484..769731 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11539.t1.exon1Gvermi11539.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 768484..769731 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11539.t1.start1Gvermi11539.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 769729..769731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11539.t1Gvermi11539.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 768484..769731 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11539.t1 ID=Gvermi11539.t1|Name=Gvermi11539.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=416bp
MTLPHRAAAPEHGGLASGYARLMRSLDAFSRMMKVPEDLRTQSTVGGTIS
IISFFVISLLFLTELWSFLTPKRTTTLSVDAGVGEKLRIYLDVDFPHVNC
EIMGVDALDIGGTVQLEITNHMYKIAIDHEGRKVEQPRTKLHVSSRVSTN
STSSAAARNTPPSPRPNECGSCMGAGLTGNECCNTCAEVRKMYEKRGWLL
TDLTNIPQCVREGVKTITPGAFDERYGCNIHGHIEISKVAGRINLTPGHS
FQFHGHTLHDLSAVRNHKLDLSHRINKLWFGEPYPGQVNPLDGISKHATR
VEDAMGAHEYFIRVVPTTYKLPYSRTLRTNQYSQSYFFRRSDPGQGGQLM
PGVFLNYDLSPIHVEVEESRRSFLHFLVQLCAIIGGVFTVASMLSTFMDD
VVLRAVRKRQVGKLL*
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spliced messenger RNA

>Gvermi11539.t1 ID=Gvermi11539.t1|Name=Gvermi11539.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at ScGOVlb_3404:768484..769731- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTCCCGCACCGGGCCGCCGCCCCCGAGCACGGCGGGCTGGCCTC
CGGCTACGCGCGCCTCATGCGCTCGCTGGACGCGTTTTCGCGCATGATGA
AGGTGCCAGAGGACTTGCGCACGCAGTCGACCGTCGGCGGCACCATTTCG
ATTATCTCCTTTTTCGTCATCTCGCTGTTGTTTCTCACAGAGCTGTGGTC
GTTTCTGACCCCCAAAAGGACCACCACTCTGTCGGTAGACGCGGGCGTGG
GTGAAAAGTTGCGCATTTACCTTGATGTGGACTTTCCGCACGTTAATTGC
GAGATTATGGGCGTCGACGCGCTGGATATTGGCGGCACCGTGCAGTTGGA
GATCACCAACCACATGTACAAGATAGCCATCGATCACGAGGGACGCAAAG
TTGAACAACCGCGAACAAAGCTGCACGTGTCGTCGCGAGTGTCAACTAAT
TCCACAAGCTCCGCCGCAGCGCGCAACACCCCCCCGTCCCCGCGCCCGAA
CGAGTGCGGCAGCTGCATGGGCGCCGGGTTGACAGGAAACGAGTGCTGCA
ACACGTGCGCCGAAGTGCGCAAAATGTACGAAAAGCGAGGCTGGCTACTA
ACTGATCTCACTAACATACCGCAGTGCGTGCGTGAGGGCGTCAAGACCAT
CACGCCCGGCGCCTTTGACGAGCGGTACGGCTGTAATATTCACGGACACA
TTGAGATTTCCAAGGTTGCGGGCCGCATCAATCTCACCCCGGGCCACTCG
TTCCAGTTCCACGGCCACACGCTACACGATTTGAGCGCTGTGCGAAACCA
CAAGCTAGACCTCAGTCACCGTATCAACAAGTTGTGGTTTGGTGAACCGT
ACCCAGGACAGGTAAACCCTCTGGACGGCATTTCTAAGCATGCCACGCGA
GTGGAAGACGCTATGGGTGCTCATGAGTACTTCATCCGCGTAGTGCCTAC
GACTTACAAACTACCGTATTCAAGGACATTGCGGACGAATCAGTATTCGC
AATCGTACTTTTTTCGAAGAAGCGACCCGGGGCAGGGCGGGCAGTTAATG
CCTGGCGTGTTCCTCAACTACGATTTGAGTCCTATTCATGTTGAAGTGGA
GGAGTCGAGAAGATCGTTTTTGCACTTTTTGGTGCAATTGTGCGCCATCA
TTGGGGGCGTATTCACTGTGGCGTCCATGTTGTCAACGTTCATGGATGAC
GTCGTGCTGCGTGCTGTGCGGAAACGACAGGTGGGCAAACTCTTGTAA
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protein sequence of Gvermi11539.t1

>Gvermi11539.t1 ID=Gvermi11539.t1|Name=Gvermi11539.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=416bp
MTLPHRAAAPEHGGLASGYARLMRSLDAFSRMMKVPEDLRTQSTVGGTIS
IISFFVISLLFLTELWSFLTPKRTTTLSVDAGVGEKLRIYLDVDFPHVNC
EIMGVDALDIGGTVQLEITNHMYKIAIDHEGRKVEQPRTKLHVSSRVSTN
STSSAAARNTPPSPRPNECGSCMGAGLTGNECCNTCAEVRKMYEKRGWLL
TDLTNIPQCVREGVKTITPGAFDERYGCNIHGHIEISKVAGRINLTPGHS
FQFHGHTLHDLSAVRNHKLDLSHRINKLWFGEPYPGQVNPLDGISKHATR
VEDAMGAHEYFIRVVPTTYKLPYSRTLRTNQYSQSYFFRRSDPGQGGQLM
PGVFLNYDLSPIHVEVEESRRSFLHFLVQLCAIIGGVFTVASMLSTFMDD
VVLRAVRKRQVGKLL*
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mRNA from alignment at ScGOVlb_3404:768484..769731-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11539.t1 ID=Gvermi11539.t1|Name=Gvermi11539.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at ScGOVlb_3404:768484..769731- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCTCCCGCACCGGGCCGCCGCCCCCGAGCACGGCGGGCTGGCCTC
CGGCTACGCGCGCCTCATGCGCTCGCTGGACGCGTTTTCGCGCATGATGA
AGGTGCCAGAGGACTTGCGCACGCAGTCGACCGTCGGCGGCACCATTTCG
ATTATCTCCTTTTTCGTCATCTCGCTGTTGTTTCTCACAGAGCTGTGGTC
GTTTCTGACCCCCAAAAGGACCACCACTCTGTCGGTAGACGCGGGCGTGG
GTGAAAAGTTGCGCATTTACCTTGATGTGGACTTTCCGCACGTTAATTGC
GAGATTATGGGCGTCGACGCGCTGGATATTGGCGGCACCGTGCAGTTGGA
GATCACCAACCACATGTACAAGATAGCCATCGATCACGAGGGACGCAAAG
TTGAACAACCGCGAACAAAGCTGCACGTGTCGTCGCGAGTGTCAACTAAT
TCCACAAGCTCCGCCGCAGCGCGCAACACCCCCCCGTCCCCGCGCCCGAA
CGAGTGCGGCAGCTGCATGGGCGCCGGGTTGACAGGAAACGAGTGCTGCA
ACACGTGCGCCGAAGTGCGCAAAATGTACGAAAAGCGAGGCTGGCTACTA
ACTGATCTCACTAACATACCGCAGTGCGTGCGTGAGGGCGTCAAGACCAT
CACGCCCGGCGCCTTTGACGAGCGGTACGGCTGTAATATTCACGGACACA
TTGAGATTTCCAAGGTTGCGGGCCGCATCAATCTCACCCCGGGCCACTCG
TTCCAGTTCCACGGCCACACGCTACACGATTTGAGCGCTGTGCGAAACCA
CAAGCTAGACCTCAGTCACCGTATCAACAAGTTGTGGTTTGGTGAACCGT
ACCCAGGACAGGTAAACCCTCTGGACGGCATTTCTAAGCATGCCACGCGA
GTGGAAGACGCTATGGGTGCTCATGAGTACTTCATCCGCGTAGTGCCTAC
GACTTACAAACTACCGTATTCAAGGACATTGCGGACGAATCAGTATTCGC
AATCGTACTTTTTTCGAAGAAGCGACCCGGGGCAGGGCGGGCAGTTAATG
CCTGGCGTGTTCCTCAACTACGATTTGAGTCCTATTCATGTTGAAGTGGA
GGAGTCGAGAAGATCGTTTTTGCACTTTTTGGTGCAATTGTGCGCCATCA
TTGGGGGCGTATTCACTGTGGCGTCCATGTTGTCAACGTTCATGGATGAC
GTCGTGCTGCGTGCTGTGCGGAAACGACAGGTGGGCAAACTCTTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:768484..769731-

>Gvermi11539.t1 ID=Gvermi11539.t1|Name=Gvermi11539.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1248bp|location=Sequence derived from alignment at ScGOVlb_3404:768484..769731- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCTCCCGCACCGGGCCGCCGCCCCCGAGCACGGCGGGCTGGCCTC
CGGCTACGCGCGCCTCATGCGCTCGCTGGACGCGTTTTCGCGCATGATGA
AGGTGCCAGAGGACTTGCGCACGCAGTCGACCGTCGGCGGCACCATTTCG
ATTATCTCCTTTTTCGTCATCTCGCTGTTGTTTCTCACAGAGCTGTGGTC
GTTTCTGACCCCCAAAAGGACCACCACTCTGTCGGTAGACGCGGGCGTGG
GTGAAAAGTTGCGCATTTACCTTGATGTGGACTTTCCGCACGTTAATTGC
GAGATTATGGGCGTCGACGCGCTGGATATTGGCGGCACCGTGCAGTTGGA
GATCACCAACCACATGTACAAGATAGCCATCGATCACGAGGGACGCAAAG
TTGAACAACCGCGAACAAAGCTGCACGTGTCGTCGCGAGTGTCAACTAAT
TCCACAAGCTCCGCCGCAGCGCGCAACACCCCCCCGTCCCCGCGCCCGAA
CGAGTGCGGCAGCTGCATGGGCGCCGGGTTGACAGGAAACGAGTGCTGCA
ACACGTGCGCCGAAGTGCGCAAAATGTACGAAAAGCGAGGCTGGCTACTA
ACTGATCTCACTAACATACCGCAGTGCGTGCGTGAGGGCGTCAAGACCAT
CACGCCCGGCGCCTTTGACGAGCGGTACGGCTGTAATATTCACGGACACA
TTGAGATTTCCAAGGTTGCGGGCCGCATCAATCTCACCCCGGGCCACTCG
TTCCAGTTCCACGGCCACACGCTACACGATTTGAGCGCTGTGCGAAACCA
CAAGCTAGACCTCAGTCACCGTATCAACAAGTTGTGGTTTGGTGAACCGT
ACCCAGGACAGGTAAACCCTCTGGACGGCATTTCTAAGCATGCCACGCGA
GTGGAAGACGCTATGGGTGCTCATGAGTACTTCATCCGCGTAGTGCCTAC
GACTTACAAACTACCGTATTCAAGGACATTGCGGACGAATCAGTATTCGC
AATCGTACTTTTTTCGAAGAAGCGACCCGGGGCAGGGCGGGCAGTTAATG
CCTGGCGTGTTCCTCAACTACGATTTGAGTCCTATTCATGTTGAAGTGGA
GGAGTCGAGAAGATCGTTTTTGCACTTTTTGGTGCAATTGTGCGCCATCA
TTGGGGGCGTATTCACTGTGGCGTCCATGTTGTCAACGTTCATGGATGAC
GTCGTGCTGCGTGCTGTGCGGAAACGACAGGTGGGCAAACTCTTGTAA
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