Gvermi12343.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12343.t1
Unique NameGvermi12343.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4290751..4292211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5693.XP_809308.1
Preferred nameCYC10
PFAMsCyclin
Max annot lvl5653|Kinetoplastida
Evalue2.64e-10
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota,3XVAN@5653|Kinetoplastida
DescriptionCyclin
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12343Gvermi12343Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4290751..4292211 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12343.t1.stop1Gvermi12343.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4290751..4290753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12343.t1.CDS1Gvermi12343.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4290751..4292211 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12343.t1.exon1Gvermi12343.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4290751..4292211 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12343.t1.start1Gvermi12343.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4292209..4292211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12343.t1Gvermi12343.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4290751..4292211 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12343.t1 ID=Gvermi12343.t1|Name=Gvermi12343.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=487bp
MANVHHLRNNTNGAQNVTLPPTAPTIIPGRGMPRYPLANCTGAMVMVVKA
AMNSRAEKGQYWLHRASASASGTDSFDMATLLPAVPTPWLGKHTPAQLRE
LYAAALRRELSVFDLPDTAPTLDAVVDHVLDNTGVSRSAIVLACIYVDRL
TVAAPHLFVTESNVQRLFGVAFMLAAKWHEDYNYSSVQFADLFGMSLQLL
NELESAFTAAIDFNLFVTTEQFHDAQLALMTEALDSMSGLNVFQTLVKAR
VADVPKAFDATKTWGKFPDVGTPATLWSMAAGLACDTEGHDDGLEDEHEI
ESLEFSTLERSPCERKGRKVVAQLARAQISHDFPRVSAESFVTELQRGFA
EDGIFRYAKLQLVARYQELDDLVMPPLERVDSPGPRLVPSPKPSPPPVTE
EGGSLCPPGGLVTSTLTVLPVHTNHAPAGGSSIARATRPRRCNTSRFADL
FALRPSRVTAAHTESYNPSGIWSTSHFMDFCPIRSW*
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spliced messenger RNA

>Gvermi12343.t1 ID=Gvermi12343.t1|Name=Gvermi12343.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at ScGOVlb_3404:4290751..4292211- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACGTTCACCACCTTAGGAACAACACCAACGGCGCGCAGAACGT
CACCCTGCCGCCGACGGCCCCCACGATTATCCCGGGCCGAGGCATGCCAC
GCTACCCACTCGCCAACTGCACGGGTGCGATGGTCATGGTGGTCAAGGCC
GCGATGAACAGCCGCGCCGAGAAGGGTCAGTATTGGCTCCACCGTGCCTC
TGCGTCGGCGAGCGGCACCGACTCGTTCGACATGGCCACGCTTCTTCCGG
CCGTGCCGACTCCGTGGCTGGGCAAGCACACTCCAGCCCAGCTGCGCGAG
CTCTACGCCGCAGCTCTGCGGCGTGAGTTGTCCGTGTTCGACCTCCCGGA
CACCGCCCCGACCCTGGATGCAGTCGTCGACCACGTCCTCGACAACACGG
GCGTGTCGCGATCGGCGATCGTCCTCGCCTGCATCTACGTGGACCGCCTC
ACCGTCGCTGCCCCGCACTTGTTCGTCACCGAGAGCAACGTGCAAAGGCT
CTTCGGCGTCGCCTTCATGCTGGCCGCGAAGTGGCACGAGGACTATAACT
ACTCCTCGGTCCAATTCGCGGACCTGTTTGGAATGTCTCTCCAGCTACTC
AACGAGCTGGAGAGCGCCTTCACGGCCGCCATCGACTTCAACCTGTTCGT
CACCACCGAACAGTTCCACGACGCGCAGCTTGCGCTCATGACGGAAGCGC
TGGATTCCATGTCCGGCCTCAATGTTTTCCAAACCCTTGTGAAGGCACGT
GTTGCAGACGTGCCCAAGGCGTTTGACGCAACGAAAACATGGGGCAAGTT
TCCGGACGTGGGAACTCCGGCGACGTTGTGGTCGATGGCGGCTGGACTGG
CGTGCGACACGGAGGGGCACGACGACGGGCTCGAGGACGAGCACGAGATT
GAGTCGCTCGAGTTTTCAACTCTGGAGCGCTCTCCGTGCGAGAGGAAGGG
GAGGAAGGTGGTCGCTCAGCTGGCACGCGCGCAGATAAGTCACGATTTTC
CGCGCGTGTCGGCTGAGTCGTTCGTGACCGAGCTGCAGCGCGGCTTTGCC
GAAGACGGCATATTCCGCTACGCCAAGCTGCAGCTCGTAGCGAGATACCA
GGAACTGGACGACCTGGTTATGCCGCCGCTGGAGCGTGTGGACTCGCCGG
GGCCTAGACTTGTGCCCTCTCCGAAACCAAGTCCACCACCAGTGACAGAG
GAGGGGGGCAGTCTATGTCCGCCCGGCGGGTTGGTGACATCCACCCTGAC
GGTTTTACCCGTCCACACCAACCACGCTCCAGCAGGCGGCTCGTCCATTG
CCCGGGCGACGCGGCCGAGAAGATGCAACACTTCGCGCTTTGCGGATTTG
TTTGCTCTGCGGCCAAGTAGGGTGACGGCGGCTCATACGGAGTCGTACAA
CCCGTCGGGCATATGGTCTACCTCACACTTCATGGACTTTTGTCCGATAA
GAAGTTGGTAA
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protein sequence of Gvermi12343.t1

>Gvermi12343.t1 ID=Gvermi12343.t1|Name=Gvermi12343.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=487bp
MANVHHLRNNTNGAQNVTLPPTAPTIIPGRGMPRYPLANCTGAMVMVVKA
AMNSRAEKGQYWLHRASASASGTDSFDMATLLPAVPTPWLGKHTPAQLRE
LYAAALRRELSVFDLPDTAPTLDAVVDHVLDNTGVSRSAIVLACIYVDRL
TVAAPHLFVTESNVQRLFGVAFMLAAKWHEDYNYSSVQFADLFGMSLQLL
NELESAFTAAIDFNLFVTTEQFHDAQLALMTEALDSMSGLNVFQTLVKAR
VADVPKAFDATKTWGKFPDVGTPATLWSMAAGLACDTEGHDDGLEDEHEI
ESLEFSTLERSPCERKGRKVVAQLARAQISHDFPRVSAESFVTELQRGFA
EDGIFRYAKLQLVARYQELDDLVMPPLERVDSPGPRLVPSPKPSPPPVTE
EGGSLCPPGGLVTSTLTVLPVHTNHAPAGGSSIARATRPRRCNTSRFADL
FALRPSRVTAAHTESYNPSGIWSTSHFMDFCPIRSW*
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mRNA from alignment at ScGOVlb_3404:4290751..4292211-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12343.t1 ID=Gvermi12343.t1|Name=Gvermi12343.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at ScGOVlb_3404:4290751..4292211- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAACGTTCACCACCTTAGGAACAACACCAACGGCGCGCAGAACGT
CACCCTGCCGCCGACGGCCCCCACGATTATCCCGGGCCGAGGCATGCCAC
GCTACCCACTCGCCAACTGCACGGGTGCGATGGTCATGGTGGTCAAGGCC
GCGATGAACAGCCGCGCCGAGAAGGGTCAGTATTGGCTCCACCGTGCCTC
TGCGTCGGCGAGCGGCACCGACTCGTTCGACATGGCCACGCTTCTTCCGG
CCGTGCCGACTCCGTGGCTGGGCAAGCACACTCCAGCCCAGCTGCGCGAG
CTCTACGCCGCAGCTCTGCGGCGTGAGTTGTCCGTGTTCGACCTCCCGGA
CACCGCCCCGACCCTGGATGCAGTCGTCGACCACGTCCTCGACAACACGG
GCGTGTCGCGATCGGCGATCGTCCTCGCCTGCATCTACGTGGACCGCCTC
ACCGTCGCTGCCCCGCACTTGTTCGTCACCGAGAGCAACGTGCAAAGGCT
CTTCGGCGTCGCCTTCATGCTGGCCGCGAAGTGGCACGAGGACTATAACT
ACTCCTCGGTCCAATTCGCGGACCTGTTTGGAATGTCTCTCCAGCTACTC
AACGAGCTGGAGAGCGCCTTCACGGCCGCCATCGACTTCAACCTGTTCGT
CACCACCGAACAGTTCCACGACGCGCAGCTTGCGCTCATGACGGAAGCGC
TGGATTCCATGTCCGGCCTCAATGTTTTCCAAACCCTTGTGAAGGCACGT
GTTGCAGACGTGCCCAAGGCGTTTGACGCAACGAAAACATGGGGCAAGTT
TCCGGACGTGGGAACTCCGGCGACGTTGTGGTCGATGGCGGCTGGACTGG
CGTGCGACACGGAGGGGCACGACGACGGGCTCGAGGACGAGCACGAGATT
GAGTCGCTCGAGTTTTCAACTCTGGAGCGCTCTCCGTGCGAGAGGAAGGG
GAGGAAGGTGGTCGCTCAGCTGGCACGCGCGCAGATAAGTCACGATTTTC
CGCGCGTGTCGGCTGAGTCGTTCGTGACCGAGCTGCAGCGCGGCTTTGCC
GAAGACGGCATATTCCGCTACGCCAAGCTGCAGCTCGTAGCGAGATACCA
GGAACTGGACGACCTGGTTATGCCGCCGCTGGAGCGTGTGGACTCGCCGG
GGCCTAGACTTGTGCCCTCTCCGAAACCAAGTCCACCACCAGTGACAGAG
GAGGGGGGCAGTCTATGTCCGCCCGGCGGGTTGGTGACATCCACCCTGAC
GGTTTTACCCGTCCACACCAACCACGCTCCAGCAGGCGGCTCGTCCATTG
CCCGGGCGACGCGGCCGAGAAGATGCAACACTTCGCGCTTTGCGGATTTG
TTTGCTCTGCGGCCAAGTAGGGTGACGGCGGCTCATACGGAGTCGTACAA
CCCGTCGGGCATATGGTCTACCTCACACTTCATGGACTTTTGTCCGATAA
GAAGTTGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4290751..4292211-

>Gvermi12343.t1 ID=Gvermi12343.t1|Name=Gvermi12343.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1461bp|location=Sequence derived from alignment at ScGOVlb_3404:4290751..4292211- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAACGTTCACCACCTTAGGAACAACACCAACGGCGCGCAGAACGT
CACCCTGCCGCCGACGGCCCCCACGATTATCCCGGGCCGAGGCATGCCAC
GCTACCCACTCGCCAACTGCACGGGTGCGATGGTCATGGTGGTCAAGGCC
GCGATGAACAGCCGCGCCGAGAAGGGTCAGTATTGGCTCCACCGTGCCTC
TGCGTCGGCGAGCGGCACCGACTCGTTCGACATGGCCACGCTTCTTCCGG
CCGTGCCGACTCCGTGGCTGGGCAAGCACACTCCAGCCCAGCTGCGCGAG
CTCTACGCCGCAGCTCTGCGGCGTGAGTTGTCCGTGTTCGACCTCCCGGA
CACCGCCCCGACCCTGGATGCAGTCGTCGACCACGTCCTCGACAACACGG
GCGTGTCGCGATCGGCGATCGTCCTCGCCTGCATCTACGTGGACCGCCTC
ACCGTCGCTGCCCCGCACTTGTTCGTCACCGAGAGCAACGTGCAAAGGCT
CTTCGGCGTCGCCTTCATGCTGGCCGCGAAGTGGCACGAGGACTATAACT
ACTCCTCGGTCCAATTCGCGGACCTGTTTGGAATGTCTCTCCAGCTACTC
AACGAGCTGGAGAGCGCCTTCACGGCCGCCATCGACTTCAACCTGTTCGT
CACCACCGAACAGTTCCACGACGCGCAGCTTGCGCTCATGACGGAAGCGC
TGGATTCCATGTCCGGCCTCAATGTTTTCCAAACCCTTGTGAAGGCACGT
GTTGCAGACGTGCCCAAGGCGTTTGACGCAACGAAAACATGGGGCAAGTT
TCCGGACGTGGGAACTCCGGCGACGTTGTGGTCGATGGCGGCTGGACTGG
CGTGCGACACGGAGGGGCACGACGACGGGCTCGAGGACGAGCACGAGATT
GAGTCGCTCGAGTTTTCAACTCTGGAGCGCTCTCCGTGCGAGAGGAAGGG
GAGGAAGGTGGTCGCTCAGCTGGCACGCGCGCAGATAAGTCACGATTTTC
CGCGCGTGTCGGCTGAGTCGTTCGTGACCGAGCTGCAGCGCGGCTTTGCC
GAAGACGGCATATTCCGCTACGCCAAGCTGCAGCTCGTAGCGAGATACCA
GGAACTGGACGACCTGGTTATGCCGCCGCTGGAGCGTGTGGACTCGCCGG
GGCCTAGACTTGTGCCCTCTCCGAAACCAAGTCCACCACCAGTGACAGAG
GAGGGGGGCAGTCTATGTCCGCCCGGCGGGTTGGTGACATCCACCCTGAC
GGTTTTACCCGTCCACACCAACCACGCTCCAGCAGGCGGCTCGTCCATTG
CCCGGGCGACGCGGCCGAGAAGATGCAACACTTCGCGCTTTGCGGATTTG
TTTGCTCTGCGGCCAAGTAGGGTGACGGCGGCTCATACGGAGTCGTACAA
CCCGTCGGGCATATGGTCTACCTCACACTTCATGGACTTTTGTCCGATAA
GAAGTTGGTAA
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