Gvermi12184.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12184.t1
Unique NameGvermi12184.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3774497..3774997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008613203.1
PFAMsNop16
Max annot lvl2759|Eukaryota
KEGG koko:K14839
Evalue2.77e-10
EggNOG OGs2ANIR@1|root,2RZEH@2759|Eukaryota
DescriptionRibosome biogenesis protein Nop16
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12184Gvermi12184Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3774497..3774997 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12184.t1.start1Gvermi12184.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3774497..3774499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12184.t1.CDS1Gvermi12184.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3774497..3774997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12184.t1.exon1Gvermi12184.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3774497..3774997 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12184.t1.stop1Gvermi12184.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3774995..3774997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12184.t1Gvermi12184.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3774497..3774997 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12184.t1 ID=Gvermi12184.t1|Name=Gvermi12184.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=167bp
MGKARPGSRKGMTKLYKSAKRAARKKAAQQRSVRPRSSAVPHETIRSAWD
WRLTPEKNLTKIGLQASVNHIKKTGAERKVCIPIQSIPNGSESVIMELEK
EAAREERKNVVIHPGERRALEAMIRRHGEDWEAMARDIKLNYLQWTPNQL
RKKVERMRSVDAVNVK*
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spliced messenger RNA

>Gvermi12184.t1 ID=Gvermi12184.t1|Name=Gvermi12184.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp|location=Sequence derived from alignment at ScGOVlb_3404:3774497..3774997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAGGCAAGACCCGGTTCGCGTAAAGGCATGACCAAGTTGTACAA
GAGCGCCAAGAGAGCCGCAAGGAAAAAAGCAGCGCAGCAGCGCTCTGTTC
GACCTCGTTCATCAGCAGTGCCTCACGAAACAATCCGTTCCGCCTGGGAT
TGGCGCCTTACTCCGGAAAAAAACCTGACTAAGATTGGTCTTCAAGCGAG
TGTGAATCACATAAAAAAGACAGGTGCTGAGCGGAAGGTATGCATTCCGA
TACAGAGTATCCCGAACGGCTCAGAGTCTGTTATTATGGAGCTGGAAAAG
GAGGCTGCTCGCGAAGAACGAAAGAATGTTGTGATTCATCCAGGGGAAAG
GCGGGCTCTGGAGGCCATGATTCGGCGCCATGGAGAGGACTGGGAAGCGA
TGGCTCGCGACATAAAACTGAATTACTTGCAATGGACGCCAAATCAGCTT
CGGAAAAAAGTCGAACGCATGCGCTCTGTCGACGCGGTGAACGTGAAATG
A
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protein sequence of Gvermi12184.t1

>Gvermi12184.t1 ID=Gvermi12184.t1|Name=Gvermi12184.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=167bp
MGKARPGSRKGMTKLYKSAKRAARKKAAQQRSVRPRSSAVPHETIRSAWD
WRLTPEKNLTKIGLQASVNHIKKTGAERKVCIPIQSIPNGSESVIMELEK
EAAREERKNVVIHPGERRALEAMIRRHGEDWEAMARDIKLNYLQWTPNQL
RKKVERMRSVDAVNVK*
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mRNA from alignment at ScGOVlb_3404:3774497..3774997+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12184.t1 ID=Gvermi12184.t1|Name=Gvermi12184.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp|location=Sequence derived from alignment at ScGOVlb_3404:3774497..3774997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAAGGCAAGACCCGGTTCGCGTAAAGGCATGACCAAGTTGTACAA
GAGCGCCAAGAGAGCCGCAAGGAAAAAAGCAGCGCAGCAGCGCTCTGTTC
GACCTCGTTCATCAGCAGTGCCTCACGAAACAATCCGTTCCGCCTGGGAT
TGGCGCCTTACTCCGGAAAAAAACCTGACTAAGATTGGTCTTCAAGCGAG
TGTGAATCACATAAAAAAGACAGGTGCTGAGCGGAAGGTATGCATTCCGA
TACAGAGTATCCCGAACGGCTCAGAGTCTGTTATTATGGAGCTGGAAAAG
GAGGCTGCTCGCGAAGAACGAAAGAATGTTGTGATTCATCCAGGGGAAAG
GCGGGCTCTGGAGGCCATGATTCGGCGCCATGGAGAGGACTGGGAAGCGA
TGGCTCGCGACATAAAACTGAATTACTTGCAATGGACGCCAAATCAGCTT
CGGAAAAAAGTCGAACGCATGCGCTCTGTCGACGCGGTGAACGTGAAATG
A
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3774497..3774997+

>Gvermi12184.t1 ID=Gvermi12184.t1|Name=Gvermi12184.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=501bp|location=Sequence derived from alignment at ScGOVlb_3404:3774497..3774997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAAGGCAAGACCCGGTTCGCGTAAAGGCATGACCAAGTTGTACAA
GAGCGCCAAGAGAGCCGCAAGGAAAAAAGCAGCGCAGCAGCGCTCTGTTC
GACCTCGTTCATCAGCAGTGCCTCACGAAACAATCCGTTCCGCCTGGGAT
TGGCGCCTTACTCCGGAAAAAAACCTGACTAAGATTGGTCTTCAAGCGAG
TGTGAATCACATAAAAAAGACAGGTGCTGAGCGGAAGGTATGCATTCCGA
TACAGAGTATCCCGAACGGCTCAGAGTCTGTTATTATGGAGCTGGAAAAG
GAGGCTGCTCGCGAAGAACGAAAGAATGTTGTGATTCATCCAGGGGAAAG
GCGGGCTCTGGAGGCCATGATTCGGCGCCATGGAGAGGACTGGGAAGCGA
TGGCTCGCGACATAAAACTGAATTACTTGCAATGGACGCCAAATCAGCTT
CGGAAAAAAGTCGAACGCATGCGCTCTGTCGACGCGGTGAACGTGAAATG
A
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