Gvermi12174.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12174.t1
Unique NameGvermi12174.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3665501..3666895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog755178.Cyan10605_2680
PFAMsPaO,Rieske
Max annot lvl1117|Cyanobacteria
Evalue7.18e-31
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,1G2NG@1117|Cyanobacteria
DescriptionPheophorbide a oxygenase
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12174Gvermi12174Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3665501..3666895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12174.t1Gvermi12174.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3665501..3666895 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12174.t1.stop1Gvermi12174.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3665501..3665503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12174.t1.CDS1Gvermi12174.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3665501..3666633 -
Gvermi12174.t1.CDS2Gvermi12174.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3666694..3666895 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12174.t1.exon1Gvermi12174.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3665501..3666633 -
Gvermi12174.t1.exon2Gvermi12174.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3666694..3666895 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12174.t1.intron1Gvermi12174.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3666634..3666693 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12174.t1.start1Gvermi12174.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3666893..3666895 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12174.t1 ID=Gvermi12174.t1|Name=Gvermi12174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=445bp
MNNWFPVAFASDIQDKPYGFIVFSKRYVAIRDVNGQYIVFDDICPHRAAP
HSEGQVVTRIDENGNKQMPQSSPEKRISSKCNLQRKYPTKLILDKLVLVY
LGDTQDSSYQRVPVPQDLQNNLAKSVVFRCAARLLPVSVTVAFENVIDPS
HVFWAHHGTSQANRNRVNTDSYVKVTSENGASFRSEVVLPPTKLSMHSIA
PVHNSYRSRRFGQGGYLLAWYTPVSADTCLFFNVNAIIAPPLIFKTILKM
TPEWVRHADFNVVLDGDTAVLRYQMDNIASQNADGFHDGWRQKYFLGASP
MDSTVFRFRKWLDRNWSTIPFPEAELQKVATGASEKMDIRYINNRYEHHT
KRCRVCSAALRNARRIRLAALLIGALLLSGCTGIAAAAALTRAGLGSSAA
RGLIRWAVGGVILLAVCVAVWAGCQKAIRSLEYNTKAAELQVGK*
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spliced messenger RNA

>Gvermi12174.t1 ID=Gvermi12174.t1|Name=Gvermi12174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:3665501..3666895- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACTGGTTTCCAGTTGCATTTGCTTCTGATATACAAGATAAACC
ATACGGTTTCATTGTCTTCTCAAAGAGGTACGTCGCGATCCGCGATGTGA
ATGGTCAGTACATCGTGTTTGATGACATATGTCCACATCGCGCTGCGCCT
CATTCTGAAGGTCAAGTGGTAACGCGTATTGATGAAAATGGAAACAAGCA
AATGCCACAATCTTCTCCCGAAAAGCGCATATCCTCCAAATGCAACCTGC
AACGAAAATATCCGACGAAATTGATTCTGGACAAGCTTGTTTTAGTATAT
CTCGGAGATACGCAAGACAGCAGCTATCAGCGCGTTCCAGTTCCACAAGA
TCTTCAAAACAACTTGGCCAAGTCGGTTGTATTTCGATGCGCGGCTCGTT
TACTTCCGGTATCAGTGACGGTTGCTTTCGAGAATGTCATAGATCCGAGT
CATGTGTTTTGGGCTCACCATGGCACTAGCCAAGCGAACAGAAATAGAGT
TAATACAGACTCGTACGTGAAAGTGACGTCTGAAAACGGAGCTTCATTCC
GCTCAGAGGTGGTCCTTCCGCCAACAAAGCTTTCGATGCATTCGATTGCC
CCTGTGCACAATTCGTACCGAAGTCGTAGATTCGGACAGGGGGGCTACTT
ACTTGCATGGTACACGCCAGTGAGCGCAGATACGTGTCTGTTCTTCAACG
TCAACGCGATCATTGCACCACCGTTGATATTCAAGACTATTCTGAAGATG
ACTCCAGAGTGGGTACGACATGCTGACTTCAACGTTGTACTGGATGGGGA
CACCGCTGTACTCCGTTACCAGATGGACAACATTGCTTCACAAAACGCGG
ATGGATTCCACGATGGCTGGAGGCAAAAGTACTTTCTTGGGGCGTCGCCT
ATGGACTCTACCGTGTTTCGATTCAGGAAATGGCTTGATCGTAACTGGAG
CACGATACCGTTTCCCGAAGCGGAACTGCAAAAGGTTGCAACCGGCGCAA
GTGAAAAGATGGATATCCGGTACATCAACAATCGCTACGAACATCACACA
AAGAGATGCCGCGTGTGCAGCGCTGCACTGCGCAATGCGCGGCGGATCCG
GTTGGCGGCGCTTTTGATTGGGGCGTTGCTGTTGAGCGGCTGTACTGGAA
TTGCGGCGGCTGCAGCCTTGACTCGAGCGGGGCTTGGGTCAAGCGCAGCG
CGGGGTTTGATTCGGTGGGCGGTGGGAGGGGTGATTCTGCTGGCTGTGTG
CGTTGCGGTTTGGGCCGGTTGTCAGAAAGCTATTCGGTCGCTAGAGTACA
ACACAAAGGCGGCGGAGCTGCAGGTCGGGAAATGA
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protein sequence of Gvermi12174.t1

>Gvermi12174.t1 ID=Gvermi12174.t1|Name=Gvermi12174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=445bp
MNNWFPVAFASDIQDKPYGFIVFSKRYVAIRDVNGQYIVFDDICPHRAAP
HSEGQVVTRIDENGNKQMPQSSPEKRISSKCNLQRKYPTKLILDKLVLVY
LGDTQDSSYQRVPVPQDLQNNLAKSVVFRCAARLLPVSVTVAFENVIDPS
HVFWAHHGTSQANRNRVNTDSYVKVTSENGASFRSEVVLPPTKLSMHSIA
PVHNSYRSRRFGQGGYLLAWYTPVSADTCLFFNVNAIIAPPLIFKTILKM
TPEWVRHADFNVVLDGDTAVLRYQMDNIASQNADGFHDGWRQKYFLGASP
MDSTVFRFRKWLDRNWSTIPFPEAELQKVATGASEKMDIRYINNRYEHHT
KRCRVCSAALRNARRIRLAALLIGALLLSGCTGIAAAAALTRAGLGSSAA
RGLIRWAVGGVILLAVCVAVWAGCQKAIRSLEYNTKAAELQVGK*
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mRNA from alignment at ScGOVlb_3404:3665501..3666895-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12174.t1 ID=Gvermi12174.t1|Name=Gvermi12174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at ScGOVlb_3404:3665501..3666895- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACAACTGGTTTCCAGTTGCATTTGCTTCTGATATACAAGATAAACC
ATACGGTTTCATTGTCTTCTCAAAGAGGTACGTCGCGATCCGCGATGTGA
ATGGTCAGTACATCGTGTTTGATGACATATGTCCACATCGCGCTGCGCCT
CATTCTGAAGGTCAAGTGGTAACGCGTATTGATGAAAATGGAAACAAGCA
AAGTGAGCTGGAATGCATGTATCATGGTTGGCGATTCAATTCCTGTGGCG
TTTGCGTGTAAGTGCCACAATCTTCTCCCGAAAAGCGCATATCCTCCAAA
TGCAACCTGCAACGAAAATATCCGACGAAATTGATTCTGGACAAGCTTGT
TTTAGTATATCTCGGAGATACGCAAGACAGCAGCTATCAGCGCGTTCCAG
TTCCACAAGATCTTCAAAACAACTTGGCCAAGTCGGTTGTATTTCGATGC
GCGGCTCGTTTACTTCCGGTATCAGTGACGGTTGCTTTCGAGAATGTCAT
AGATCCGAGTCATGTGTTTTGGGCTCACCATGGCACTAGCCAAGCGAACA
GAAATAGAGTTAATACAGACTCGTACGTGAAAGTGACGTCTGAAAACGGA
GCTTCATTCCGCTCAGAGGTGGTCCTTCCGCCAACAAAGCTTTCGATGCA
TTCGATTGCCCCTGTGCACAATTCGTACCGAAGTCGTAGATTCGGACAGG
GGGGCTACTTACTTGCATGGTACACGCCAGTGAGCGCAGATACGTGTCTG
TTCTTCAACGTCAACGCGATCATTGCACCACCGTTGATATTCAAGACTAT
TCTGAAGATGACTCCAGAGTGGGTACGACATGCTGACTTCAACGTTGTAC
TGGATGGGGACACCGCTGTACTCCGTTACCAGATGGACAACATTGCTTCA
CAAAACGCGGATGGATTCCACGATGGCTGGAGGCAAAAGTACTTTCTTGG
GGCGTCGCCTATGGACTCTACCGTGTTTCGATTCAGGAAATGGCTTGATC
GTAACTGGAGCACGATACCGTTTCCCGAAGCGGAACTGCAAAAGGTTGCA
ACCGGCGCAAGTGAAAAGATGGATATCCGGTACATCAACAATCGCTACGA
ACATCACACAAAGAGATGCCGCGTGTGCAGCGCTGCACTGCGCAATGCGC
GGCGGATCCGGTTGGCGGCGCTTTTGATTGGGGCGTTGCTGTTGAGCGGC
TGTACTGGAATTGCGGCGGCTGCAGCCTTGACTCGAGCGGGGCTTGGGTC
AAGCGCAGCGCGGGGTTTGATTCGGTGGGCGGTGGGAGGGGTGATTCTGC
TGGCTGTGTGCGTTGCGGTTTGGGCCGGTTGTCAGAAAGCTATTCGGTCG
CTAGAGTACAACACAAAGGCGGCGGAGCTGCAGGTCGGGAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3665501..3666895-

>Gvermi12174.t1 ID=Gvermi12174.t1|Name=Gvermi12174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:3665501..3666895- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACAACTGGTTTCCAGTTGCATTTGCTTCTGATATACAAGATAAACC
ATACGGTTTCATTGTCTTCTCAAAGAGGTACGTCGCGATCCGCGATGTGA
ATGGTCAGTACATCGTGTTTGATGACATATGTCCACATCGCGCTGCGCCT
CATTCTGAAGGTCAAGTGGTAACGCGTATTGATGAAAATGGAAACAAGCA
AATGCCACAATCTTCTCCCGAAAAGCGCATATCCTCCAAATGCAACCTGC
AACGAAAATATCCGACGAAATTGATTCTGGACAAGCTTGTTTTAGTATAT
CTCGGAGATACGCAAGACAGCAGCTATCAGCGCGTTCCAGTTCCACAAGA
TCTTCAAAACAACTTGGCCAAGTCGGTTGTATTTCGATGCGCGGCTCGTT
TACTTCCGGTATCAGTGACGGTTGCTTTCGAGAATGTCATAGATCCGAGT
CATGTGTTTTGGGCTCACCATGGCACTAGCCAAGCGAACAGAAATAGAGT
TAATACAGACTCGTACGTGAAAGTGACGTCTGAAAACGGAGCTTCATTCC
GCTCAGAGGTGGTCCTTCCGCCAACAAAGCTTTCGATGCATTCGATTGCC
CCTGTGCACAATTCGTACCGAAGTCGTAGATTCGGACAGGGGGGCTACTT
ACTTGCATGGTACACGCCAGTGAGCGCAGATACGTGTCTGTTCTTCAACG
TCAACGCGATCATTGCACCACCGTTGATATTCAAGACTATTCTGAAGATG
ACTCCAGAGTGGGTACGACATGCTGACTTCAACGTTGTACTGGATGGGGA
CACCGCTGTACTCCGTTACCAGATGGACAACATTGCTTCACAAAACGCGG
ATGGATTCCACGATGGCTGGAGGCAAAAGTACTTTCTTGGGGCGTCGCCT
ATGGACTCTACCGTGTTTCGATTCAGGAAATGGCTTGATCGTAACTGGAG
CACGATACCGTTTCCCGAAGCGGAACTGCAAAAGGTTGCAACCGGCGCAA
GTGAAAAGATGGATATCCGGTACATCAACAATCGCTACGAACATCACACA
AAGAGATGCCGCGTGTGCAGCGCTGCACTGCGCAATGCGCGGCGGATCCG
GTTGGCGGCGCTTTTGATTGGGGCGTTGCTGTTGAGCGGCTGTACTGGAA
TTGCGGCGGCTGCAGCCTTGACTCGAGCGGGGCTTGGGTCAAGCGCAGCG
CGGGGTTTGATTCGGTGGGCGGTGGGAGGGGTGATTCTGCTGGCTGTGTG
CGTTGCGGTTTGGGCCGGTTGTCAGAAAGCTATTCGGTCGCTAGAGTACA
ACACAAAGGCGGCGGAGCTGCAGGTCGGGAAATGA
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