Gvermi12182.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12182.t1
Unique NameGvermi12182.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3768713..3769392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12182Gvermi12182Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3768713..3769392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12182.t1Gvermi12182.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3768713..3769392 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12182.t1.stop1Gvermi12182.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3768713..3768715 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12182.t1.CDS1Gvermi12182.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3768713..3769041 -
Gvermi12182.t1.CDS2Gvermi12182.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3769212..3769392 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12182.t1.exon1Gvermi12182.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3768713..3769041 -
Gvermi12182.t1.exon2Gvermi12182.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3769212..3769392 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12182.t1.intron1Gvermi12182.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3769042..3769211 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12182.t1.start1Gvermi12182.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3769390..3769392 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12182.t1 ID=Gvermi12182.t1|Name=Gvermi12182.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=170bp
MSTPYPAHIQVPVVYTPTAELNHLQLMKLYNLEMPAIEDISWEDVSANSS
AKLREYSKVYDVFENGSKVHEDVRELALEKGLAFHLAQKYGLETLINVVH
FMCEKDGKWTDESNAQTAALITEEFARVAERKLTEALRTSGNAGNVMSCI
SNCGPWEGWCGFKSGVHRE*
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spliced messenger RNA

>Gvermi12182.t1 ID=Gvermi12182.t1|Name=Gvermi12182.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=510bp|location=Sequence derived from alignment at ScGOVlb_3404:3768713..3769392- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACTCCTTACCCTGCTCACATTCAAGTTCCAGTTGTATACACTCC
GACTGCCGAACTCAACCATTTACAATTGATGAAACTGTACAATCTTGAAA
TGCCAGCTATAGAAGACATCTCATGGGAGGATGTTTCGGCTAATTCAAGT
GCAAAGCTCAGGGAGTACTCGAAAGTATATGACGTCTTCGAGAATGGAAG
CAAAGTGCATGAAGATGTACGAGAGCTGGCCTTGGAAAAGGGATTAGCTT
TTCACTTGGCTCAAAAATATGGGCTAGAAACATTAATTAATGTGGTCCAT
TTCATGTGTGAAAAGGATGGCAAATGGACGGATGAGAGCAATGCACAGAC
GGCTGCTTTGATCACTGAAGAATTTGCACGCGTCGCGGAAAGAAAATTGA
CAGAAGCCTTGAGAACAAGCGGTAATGCAGGAAACGTAATGTCGTGCATA
AGTAATTGCGGCCCATGGGAGGGTTGGTGCGGTTTCAAAAGCGGTGTTCA
TCGAGAGTGA
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protein sequence of Gvermi12182.t1

>Gvermi12182.t1 ID=Gvermi12182.t1|Name=Gvermi12182.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=170bp
MSTPYPAHIQVPVVYTPTAELNHLQLMKLYNLEMPAIEDISWEDVSANSS
AKLREYSKVYDVFENGSKVHEDVRELALEKGLAFHLAQKYGLETLINVVH
FMCEKDGKWTDESNAQTAALITEEFARVAERKLTEALRTSGNAGNVMSCI
SNCGPWEGWCGFKSGVHRE*
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mRNA from alignment at ScGOVlb_3404:3768713..3769392-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12182.t1 ID=Gvermi12182.t1|Name=Gvermi12182.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=680bp|location=Sequence derived from alignment at ScGOVlb_3404:3768713..3769392- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACTCCTTACCCTGCTCACATTCAAGTTCCAGTTGTATACACTCC
GACTGCCGAACTCAACCATTTACAATTGATGAAACTGTACAATCTTGAAA
TGCCAGCTATAGAAGACATCTCATGGGAGGATGTTTCGGCTAATTCAAGT
GCAAAGCTCAGGGAGTACTCGAAAGTATATGGTAAGCATATTTCCTACAA
GCAGCACGAAATATGAGACAGACGCTAACTCAAGTAGGCGCCCGTGCAAA
GGGTCTACGAATGCCACGGAATCGCGCAGAGATGAATATATTCTTCACGG
CATTGCTACATGCTCGATACACCTCAACGTTTTCTCGATCTCAATGCGAA
GACGTCTTCGAGAATGGAAGCAAAGTGCATGAAGATGTACGAGAGCTGGC
CTTGGAAAAGGGATTAGCTTTTCACTTGGCTCAAAAATATGGGCTAGAAA
CATTAATTAATGTGGTCCATTTCATGTGTGAAAAGGATGGCAAATGGACG
GATGAGAGCAATGCACAGACGGCTGCTTTGATCACTGAAGAATTTGCACG
CGTCGCGGAAAGAAAATTGACAGAAGCCTTGAGAACAAGCGGTAATGCAG
GAAACGTAATGTCGTGCATAAGTAATTGCGGCCCATGGGAGGGTTGGTGC
GGTTTCAAAAGCGGTGTTCATCGAGAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3768713..3769392-

>Gvermi12182.t1 ID=Gvermi12182.t1|Name=Gvermi12182.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=510bp|location=Sequence derived from alignment at ScGOVlb_3404:3768713..3769392- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACTCCTTACCCTGCTCACATTCAAGTTCCAGTTGTATACACTCC
GACTGCCGAACTCAACCATTTACAATTGATGAAACTGTACAATCTTGAAA
TGCCAGCTATAGAAGACATCTCATGGGAGGATGTTTCGGCTAATTCAAGT
GCAAAGCTCAGGGAGTACTCGAAAGTATATGACGTCTTCGAGAATGGAAG
CAAAGTGCATGAAGATGTACGAGAGCTGGCCTTGGAAAAGGGATTAGCTT
TTCACTTGGCTCAAAAATATGGGCTAGAAACATTAATTAATGTGGTCCAT
TTCATGTGTGAAAAGGATGGCAAATGGACGGATGAGAGCAATGCACAGAC
GGCTGCTTTGATCACTGAAGAATTTGCACGCGTCGCGGAAAGAAAATTGA
CAGAAGCCTTGAGAACAAGCGGTAATGCAGGAAACGTAATGTCGTGCATA
AGTAATTGCGGCCCATGGGAGGGTTGGTGCGGTTTCAAAAGCGGTGTTCA
TCGAGAGTGA
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