Gvermi11735.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11735.t1
Unique NameGvermi11735.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length525
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1854897..1856562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706862.1
Preferred nameenc
PFAMsR3H,SUZ
Max annot lvl2759|Eukaryota
KEGG koko:K02360
KEGG Pathwayko04320,map04320
GOsGO:0000003,GO:0001709,GO:0003002,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007292,GO:0007293,GO:0007294,GO:0007308,GO:0007309,GO:0007310,GO:0007317,GO:0007389,GO:0008150,GO:0008283,GO:0008356,GO:0009653,GO:0009798,GO:0009950,GO:0009953,GO:0009987,GO:0009994,GO:0016043,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030706,GO:0030716,GO:0030717,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0043900,GO:0044087,GO:0044424,GO:0044464,GO:0044703,GO:0045165,GO:0045595,GO:0045995,GO:0048134,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051239,GO:0051276,GO:0051301,GO:0051321,GO:0051704,GO:0060281,GO:0060284,GO:0060341,GO:0061982,GO:0061988,GO:0065007,GO:0070192,GO:0071840,GO:1902875,GO:1903046,GO:1903429,GO:1904580,GO:1905879,GO:2000026,GO:2000241
Evalue1.5e-14
EggNOG OGsKOG2953@1|root,KOG2953@2759|Eukaryota
Descriptioncalmodulin binding
COG categoryL
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11735Gvermi11735Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1854897..1856562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11735.t1Gvermi11735.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1854897..1856562 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11735.t1.start1Gvermi11735.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1854897..1854899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11735.t1.CDS1Gvermi11735.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1854897..1855504 +
Gvermi11735.t1.CDS2Gvermi11735.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1855596..1856562 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11735.t1.exon1Gvermi11735.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1854897..1855504 +
Gvermi11735.t1.exon2Gvermi11735.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1855596..1856562 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11735.t1.intron1Gvermi11735.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1855505..1855595 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11735.t1.stop1Gvermi11735.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1856560..1856562 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11735.t1 ID=Gvermi11735.t1|Name=Gvermi11735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=525bp
MSDSELSDAPDAWLWKVMQKQKNREMIARLEDNLTSFVHDAQQTSLRFPP
RNAFHRRVCHAVAQRYQLAHKLEPMPNAHVSSDALRLVLIKTSQSSIPTH
RLEHFAALPSPPQAQQPCSTQQQQHLATSLSMAHVDNSHADTSATTSNPL
PQSQSTSIPARFLRRPATGNANAARPRISSSSSSLSSASAPALRNISEED
YRKARARIFKPSSSPVDINITMISQVPQDGRDEQRPLETREGQKDSLETE
LQRVVKLNPNSIAKGPVQGSKGFERRRNRRQSPSDLNQRAPSSHVLQTTP
SNTEKPLSSAQSRPSVSHENLRTQSSRTRADSRTLDLRSSSNSSVSNPHS
TSASARRKPAYPTEPSNLDLQDPDFDRRYDKWAVRHPAPQQPPPQHIPVP
IFSQLLYPYAVQAPHHVHPSNMHLPPASVPMQQPITQYQSVVHHPSNLVF
HHTGHNVHEYESRVGTANVSGFVINRSMDAGDTVVATSQGFANHISASTI
GTQVVHRASPAYGLDSTVDFPPLQ*
back to top

spliced messenger RNA

>Gvermi11735.t1 ID=Gvermi11735.t1|Name=Gvermi11735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1575bp|location=Sequence derived from alignment at ScGOVlb_3404:1854897..1856562+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACTCAGAACTCTCCGATGCTCCTGACGCATGGTTGTGGAAAGT
GATGCAAAAACAGAAGAACCGTGAAATGATCGCACGCTTGGAAGATAATC
TTACTTCATTTGTACATGATGCCCAACAAACCTCACTTCGTTTCCCGCCC
AGAAATGCGTTTCACCGACGAGTATGCCACGCCGTCGCGCAAAGATATCA
GCTTGCGCACAAGTTAGAACCCATGCCCAATGCGCATGTGTCGTCCGATG
CCCTACGATTGGTACTTATCAAGACGTCGCAATCATCCATCCCCACCCAC
CGTCTCGAGCATTTTGCAGCACTCCCCTCGCCACCGCAAGCTCAGCAGCC
ATGTTCTACACAGCAGCAGCAACACCTAGCGACGAGTTTATCCATGGCAC
ATGTTGACAATTCTCATGCTGATACATCGGCTACTACCTCTAATCCTTTG
CCTCAATCACAATCCACCTCCATTCCTGCGCGCTTCTTGCGAAGGCCCGC
AACGGGCAACGCAAATGCTGCACGACCGCGTATTTCGTCCAGTTCATCTT
CGCTATCATCAGCCTCTGCTCCTGCTCTTCGAAATATCTCCGAAGAAGAC
TACCGAAAAGCTCGTGCAAGAATATTCAAACCATCCTCGTCTCCTGTAGA
TATCAACATCACCATGATTTCACAAGTTCCTCAAGATGGTAGGGATGAAC
AGCGGCCACTAGAAACACGGGAAGGGCAAAAGGATTCTCTTGAAACCGAG
CTTCAGCGGGTGGTGAAACTGAACCCGAATTCTATCGCAAAAGGTCCGGT
GCAAGGCTCAAAAGGCTTTGAACGTCGTCGGAACCGGCGTCAGAGTCCAT
CTGATTTGAATCAGCGTGCGCCATCATCCCATGTGCTTCAAACAACACCT
TCGAACACAGAAAAGCCTTTGTCATCGGCACAGTCGCGTCCGAGTGTCTC
CCACGAAAATCTGCGCACTCAGTCATCGCGCACAAGAGCTGATTCACGCA
CCCTTGATTTGCGGTCATCATCGAATTCATCGGTGTCTAATCCTCACTCT
ACATCTGCGTCCGCAAGAAGGAAGCCAGCGTATCCGACAGAACCCAGCAA
TCTTGATCTTCAAGACCCCGATTTTGACCGGCGATATGACAAGTGGGCTG
TCCGACATCCGGCCCCACAGCAACCACCACCTCAACATATTCCCGTTCCA
ATTTTCAGTCAACTACTCTACCCTTATGCTGTTCAGGCTCCGCATCATGT
TCACCCATCAAACATGCACCTTCCACCAGCATCGGTTCCCATGCAGCAGC
CAATTACGCAGTATCAGTCTGTGGTGCATCATCCTTCGAATCTTGTGTTT
CACCATACTGGGCACAATGTCCATGAATACGAATCTCGTGTTGGCACTGC
CAATGTCAGTGGGTTTGTCATTAACCGTTCAATGGATGCTGGCGATACTG
TCGTGGCAACGTCTCAAGGGTTTGCAAACCACATATCCGCTTCGACTATC
GGAACCCAGGTGGTGCATAGAGCTTCCCCAGCATACGGTCTCGATTCTAC
TGTGGATTTTCCCCCTTTACAATGA
back to top

protein sequence of Gvermi11735.t1

>Gvermi11735.t1 ID=Gvermi11735.t1|Name=Gvermi11735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=525bp
MSDSELSDAPDAWLWKVMQKQKNREMIARLEDNLTSFVHDAQQTSLRFPP
RNAFHRRVCHAVAQRYQLAHKLEPMPNAHVSSDALRLVLIKTSQSSIPTH
RLEHFAALPSPPQAQQPCSTQQQQHLATSLSMAHVDNSHADTSATTSNPL
PQSQSTSIPARFLRRPATGNANAARPRISSSSSSLSSASAPALRNISEED
YRKARARIFKPSSSPVDINITMISQVPQDGRDEQRPLETREGQKDSLETE
LQRVVKLNPNSIAKGPVQGSKGFERRRNRRQSPSDLNQRAPSSHVLQTTP
SNTEKPLSSAQSRPSVSHENLRTQSSRTRADSRTLDLRSSSNSSVSNPHS
TSASARRKPAYPTEPSNLDLQDPDFDRRYDKWAVRHPAPQQPPPQHIPVP
IFSQLLYPYAVQAPHHVHPSNMHLPPASVPMQQPITQYQSVVHHPSNLVF
HHTGHNVHEYESRVGTANVSGFVINRSMDAGDTVVATSQGFANHISASTI
GTQVVHRASPAYGLDSTVDFPPLQ*
back to top

mRNA from alignment at ScGOVlb_3404:1854897..1856562+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11735.t1 ID=Gvermi11735.t1|Name=Gvermi11735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1666bp|location=Sequence derived from alignment at ScGOVlb_3404:1854897..1856562+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGACTCAGAACTCTCCGATGCTCCTGACGCATGGTTGTGGAAAGT
GATGCAAAAACAGAAGAACCGTGAAATGATCGCACGCTTGGAAGATAATC
TTACTTCATTTGTACATGATGCCCAACAAACCTCACTTCGTTTCCCGCCC
AGAAATGCGTTTCACCGACGAGTATGCCACGCCGTCGCGCAAAGATATCA
GCTTGCGCACAAGTTAGAACCCATGCCCAATGCGCATGTGTCGTCCGATG
CCCTACGATTGGTACTTATCAAGACGTCGCAATCATCCATCCCCACCCAC
CGTCTCGAGCATTTTGCAGCACTCCCCTCGCCACCGCAAGCTCAGCAGCC
ATGTTCTACACAGCAGCAGCAACACCTAGCGACGAGTTTATCCATGGCAC
ATGTTGACAATTCTCATGCTGATACATCGGCTACTACCTCTAATCCTTTG
CCTCAATCACAATCCACCTCCATTCCTGCGCGCTTCTTGCGAAGGCCCGC
AACGGGCAACGCAAATGCTGCACGACCGCGTATTTCGTCCAGTTCATCTT
CGCTATCATCAGCCTCTGCTCCTGCTCTTCGAAATATCTCCGAAGAAGAC
TACCGAAAGTAAGTTCATGTGCAACACTTAACACTTTCACTCGGAGGCGC
TATTCCCTGGCAGTCATGCATTTCTAACGAAAGCTTTTTCTATAAGCAGA
GCTCGTGCAAGAATATTCAAACCATCCTCGTCTCCTGTAGATATCAACAT
CACCATGATTTCACAAGTTCCTCAAGATGGTAGGGATGAACAGCGGCCAC
TAGAAACACGGGAAGGGCAAAAGGATTCTCTTGAAACCGAGCTTCAGCGG
GTGGTGAAACTGAACCCGAATTCTATCGCAAAAGGTCCGGTGCAAGGCTC
AAAAGGCTTTGAACGTCGTCGGAACCGGCGTCAGAGTCCATCTGATTTGA
ATCAGCGTGCGCCATCATCCCATGTGCTTCAAACAACACCTTCGAACACA
GAAAAGCCTTTGTCATCGGCACAGTCGCGTCCGAGTGTCTCCCACGAAAA
TCTGCGCACTCAGTCATCGCGCACAAGAGCTGATTCACGCACCCTTGATT
TGCGGTCATCATCGAATTCATCGGTGTCTAATCCTCACTCTACATCTGCG
TCCGCAAGAAGGAAGCCAGCGTATCCGACAGAACCCAGCAATCTTGATCT
TCAAGACCCCGATTTTGACCGGCGATATGACAAGTGGGCTGTCCGACATC
CGGCCCCACAGCAACCACCACCTCAACATATTCCCGTTCCAATTTTCAGT
CAACTACTCTACCCTTATGCTGTTCAGGCTCCGCATCATGTTCACCCATC
AAACATGCACCTTCCACCAGCATCGGTTCCCATGCAGCAGCCAATTACGC
AGTATCAGTCTGTGGTGCATCATCCTTCGAATCTTGTGTTTCACCATACT
GGGCACAATGTCCATGAATACGAATCTCGTGTTGGCACTGCCAATGTCAG
TGGGTTTGTCATTAACCGTTCAATGGATGCTGGCGATACTGTCGTGGCAA
CGTCTCAAGGGTTTGCAAACCACATATCCGCTTCGACTATCGGAACCCAG
GTGGTGCATAGAGCTTCCCCAGCATACGGTCTCGATTCTACTGTGGATTT
TCCCCCTTTACAATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:1854897..1856562+

>Gvermi11735.t1 ID=Gvermi11735.t1|Name=Gvermi11735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1575bp|location=Sequence derived from alignment at ScGOVlb_3404:1854897..1856562+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGACTCAGAACTCTCCGATGCTCCTGACGCATGGTTGTGGAAAGT
GATGCAAAAACAGAAGAACCGTGAAATGATCGCACGCTTGGAAGATAATC
TTACTTCATTTGTACATGATGCCCAACAAACCTCACTTCGTTTCCCGCCC
AGAAATGCGTTTCACCGACGAGTATGCCACGCCGTCGCGCAAAGATATCA
GCTTGCGCACAAGTTAGAACCCATGCCCAATGCGCATGTGTCGTCCGATG
CCCTACGATTGGTACTTATCAAGACGTCGCAATCATCCATCCCCACCCAC
CGTCTCGAGCATTTTGCAGCACTCCCCTCGCCACCGCAAGCTCAGCAGCC
ATGTTCTACACAGCAGCAGCAACACCTAGCGACGAGTTTATCCATGGCAC
ATGTTGACAATTCTCATGCTGATACATCGGCTACTACCTCTAATCCTTTG
CCTCAATCACAATCCACCTCCATTCCTGCGCGCTTCTTGCGAAGGCCCGC
AACGGGCAACGCAAATGCTGCACGACCGCGTATTTCGTCCAGTTCATCTT
CGCTATCATCAGCCTCTGCTCCTGCTCTTCGAAATATCTCCGAAGAAGAC
TACCGAAAAGCTCGTGCAAGAATATTCAAACCATCCTCGTCTCCTGTAGA
TATCAACATCACCATGATTTCACAAGTTCCTCAAGATGGTAGGGATGAAC
AGCGGCCACTAGAAACACGGGAAGGGCAAAAGGATTCTCTTGAAACCGAG
CTTCAGCGGGTGGTGAAACTGAACCCGAATTCTATCGCAAAAGGTCCGGT
GCAAGGCTCAAAAGGCTTTGAACGTCGTCGGAACCGGCGTCAGAGTCCAT
CTGATTTGAATCAGCGTGCGCCATCATCCCATGTGCTTCAAACAACACCT
TCGAACACAGAAAAGCCTTTGTCATCGGCACAGTCGCGTCCGAGTGTCTC
CCACGAAAATCTGCGCACTCAGTCATCGCGCACAAGAGCTGATTCACGCA
CCCTTGATTTGCGGTCATCATCGAATTCATCGGTGTCTAATCCTCACTCT
ACATCTGCGTCCGCAAGAAGGAAGCCAGCGTATCCGACAGAACCCAGCAA
TCTTGATCTTCAAGACCCCGATTTTGACCGGCGATATGACAAGTGGGCTG
TCCGACATCCGGCCCCACAGCAACCACCACCTCAACATATTCCCGTTCCA
ATTTTCAGTCAACTACTCTACCCTTATGCTGTTCAGGCTCCGCATCATGT
TCACCCATCAAACATGCACCTTCCACCAGCATCGGTTCCCATGCAGCAGC
CAATTACGCAGTATCAGTCTGTGGTGCATCATCCTTCGAATCTTGTGTTT
CACCATACTGGGCACAATGTCCATGAATACGAATCTCGTGTTGGCACTGC
CAATGTCAGTGGGTTTGTCATTAACCGTTCAATGGATGCTGGCGATACTG
TCGTGGCAACGTCTCAAGGGTTTGCAAACCACATATCCGCTTCGACTATC
GGAACCCAGGTGGTGCATAGAGCTTCCCCAGCATACGGTCTCGATTCTAC
TGTGGATTTTCCCCCTTTACAATGA
back to top