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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1210884.HG799464_gene10762 |
| Max annot lvl | 2|Bacteria |
| Evalue | 2.78e-77 |
| EggNOG OGs | 28HSN@1|root,2Z7ZT@2|Bacteria |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=819bp MTSECLFYNPDDDSYSQREAEKFRRWSALFANVLSGVVRIGSRTPIRNKP IFLTPEVLPGGFASGRFSAGGNLADFERELVAKNHLEVRTSVNERDVWLQ NSRKSLNLHFLSAEGLRELYQFLESGKYHCVYPEEAALLVVVWMLKRGDA ELARGLVNTIMPYFGDVRFYPRPSSAPISLDLKCSLLSVGAFKREISDMR ISKGSFSYAVNKLIVEDFAPNYDGLLSLLLATCNSDLIPFKSRLSNNMVA AFTTLFKNFEQIQRVYNAFFDMAKRPKREMKQLGDSRNCGKLLRITKNLI ESKSKRLSRQDKIVAHQILVQIRDDSRRGLPCEWVPGENFENGGLSLDKL PRKLKTFRANQRKTTQAEHQLVSRNWKKLSVDRVSKVSIDDQTGVDDVRS LTQPVFRSEAERYGVKRGSTVPLSISRLATKLERKPIENMFEEGLIPSME ALAMLFDQIMGSVQTRWPGPIEMRQLYASLFGAFRRRRSLLLLNYQSQLR FEELPWVHHLEEVRRKQIGTSSDHNLDIFCDLIRKCISKWPEVMIPNKMV TALDHMARDYGVSTAKGPWIGLLPELAADIFMGGFTSKWYDHATMAKNMM SSLLYGKYYATGAEASPWNEMTRSPHETDPQSKGVQFSTLCAKRAERLKV EGWVARNGAVIEESMILTGQNYPYLLQVLKFYGKNFSSTEVKGISVKCFH RLKKMSKLALDDKNPWQTRLQVTKNVAYGWRQMVALVSIMDQTDIEHFFR QTASLNEAAGGCTLQRALVDLRAAWIASQNESPVRRRPWKPLRGWHSGKH GLWDKSWCEKMKAMVEHS* back to topspliced messenger RNA >Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2457bp|location=Sequence derived from alignment at ScGOVlb_3404:4093934..4096390+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGACATCTGAATGCCTATTCTATAATCCTGATGATGACAGTTATTCGCA GAGAGAAGCTGAGAAGTTCCGACGTTGGTCCGCGTTGTTTGCTAATGTCC TGAGCGGCGTCGTTAGAATTGGTTCAAGAACTCCGATTCGAAACAAGCCC ATATTCCTTACTCCTGAAGTTCTTCCAGGCGGGTTTGCCAGTGGTCGTTT TTCAGCGGGAGGAAATCTTGCTGATTTCGAAAGGGAACTGGTTGCCAAAA ACCACTTGGAAGTTCGAACCTCCGTAAATGAACGAGACGTTTGGCTGCAG AATTCACGAAAATCTTTGAACTTGCATTTTTTGTCTGCAGAGGGATTGCG TGAACTGTACCAATTTCTCGAGTCTGGAAAGTATCATTGCGTGTATCCAG AAGAAGCTGCTCTCCTTGTCGTGGTATGGATGCTCAAACGTGGGGACGCA GAGTTGGCTCGTGGTTTGGTGAACACCATCATGCCGTATTTTGGAGACGT TCGTTTTTACCCACGACCTTCATCGGCACCTATAAGTTTAGATTTGAAGT GCAGTTTGCTCTCTGTCGGCGCATTTAAGAGAGAGATTTCTGATATGCGA ATATCGAAAGGTAGTTTTTCGTATGCTGTGAACAAACTAATTGTCGAGGA CTTCGCCCCCAACTACGATGGACTTCTGTCATTGTTGCTAGCTACTTGCA ATAGTGATCTGATTCCTTTCAAATCTCGACTTTCAAATAACATGGTTGCG GCCTTCACAACGCTTTTCAAAAACTTTGAGCAAATTCAGAGAGTGTATAA TGCTTTCTTTGATATGGCAAAGCGTCCAAAAAGGGAAATGAAGCAGCTTG GAGACTCACGGAATTGCGGTAAATTGTTGAGAATTACGAAGAACCTTATA GAAAGCAAATCAAAACGGCTTTCAAGACAAGACAAGATTGTGGCGCATCA GATACTGGTTCAAATTCGAGATGACTCAAGGCGAGGACTGCCTTGCGAAT GGGTGCCGGGTGAGAACTTCGAAAACGGGGGGTTAAGTTTGGATAAACTT CCGAGAAAACTAAAAACCTTCAGAGCGAATCAGAGAAAGACTACTCAGGC GGAACATCAGTTGGTTTCACGTAACTGGAAAAAGCTCTCGGTAGACCGAG TTTCCAAGGTTAGTATAGATGATCAAACTGGAGTTGATGATGTTCGGTCA TTGACCCAGCCCGTTTTTCGGAGTGAAGCAGAGCGCTATGGAGTTAAGCG TGGCAGCACAGTGCCGCTATCAATTTCTCGACTCGCGACAAAGCTCGAGA GGAAACCTATTGAGAACATGTTTGAGGAAGGATTGATACCTTCAATGGAA GCCTTAGCCATGTTGTTCGATCAAATTATGGGGTCTGTGCAGACACGATG GCCGGGGCCCATTGAGATGAGGCAACTATATGCATCACTTTTTGGAGCTT TTCGTCGCCGCCGATCTCTTCTACTACTAAATTACCAGTCGCAACTAAGA TTTGAAGAACTTCCGTGGGTGCATCATCTCGAAGAGGTTCGGCGCAAACA AATTGGAACATCGAGTGACCACAACCTTGATATCTTCTGCGATTTGATCC GAAAATGCATTTCTAAATGGCCTGAAGTCATGATTCCGAACAAGATGGTC ACCGCCCTGGATCACATGGCTAGAGATTACGGAGTATCAACTGCGAAAGG CCCGTGGATTGGACTACTTCCAGAGTTAGCAGCGGATATTTTTATGGGTG GATTCACCTCGAAATGGTACGACCATGCTACCATGGCAAAGAATATGATG TCGTCCTTGCTCTACGGGAAATACTACGCGACTGGAGCTGAAGCCTCTCC CTGGAATGAAATGACACGATCGCCGCACGAGACCGATCCACAGAGCAAAG GAGTGCAATTTTCAACCTTATGTGCAAAACGCGCTGAGCGTCTTAAAGTA GAGGGATGGGTAGCTCGGAATGGAGCCGTTATCGAAGAATCTATGATTCT TACCGGCCAGAATTATCCGTACCTTTTGCAAGTCTTAAAGTTCTATGGGA AAAACTTTAGCAGCACAGAAGTGAAAGGGATAAGTGTTAAATGTTTCCAT CGTTTAAAGAAGATGTCGAAGCTGGCACTGGACGACAAGAACCCCTGGCA AACAAGACTGCAGGTCACAAAAAATGTGGCTTACGGTTGGCGTCAAATGG TGGCTTTGGTTTCCATAATGGATCAAACAGATATAGAGCATTTTTTCCGC CAGACGGCTTCCCTGAACGAGGCCGCTGGTGGGTGCACTTTGCAAAGGGC TCTGGTGGACCTACGAGCTGCATGGATAGCATCGCAGAATGAAAGCCCCG TTCGCCGCCGTCCATGGAAGCCGTTGAGAGGGTGGCACAGTGGCAAGCAC GGTCTCTGGGATAAATCATGGTGCGAGAAGATGAAAGCAATGGTAGAGCA TTCATAG back to topprotein sequence of Gvermi12285.t1 >Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=819bp
MTSECLFYNPDDDSYSQREAEKFRRWSALFANVLSGVVRIGSRTPIRNKP IFLTPEVLPGGFASGRFSAGGNLADFERELVAKNHLEVRTSVNERDVWLQ NSRKSLNLHFLSAEGLRELYQFLESGKYHCVYPEEAALLVVVWMLKRGDA ELARGLVNTIMPYFGDVRFYPRPSSAPISLDLKCSLLSVGAFKREISDMR ISKGSFSYAVNKLIVEDFAPNYDGLLSLLLATCNSDLIPFKSRLSNNMVA AFTTLFKNFEQIQRVYNAFFDMAKRPKREMKQLGDSRNCGKLLRITKNLI ESKSKRLSRQDKIVAHQILVQIRDDSRRGLPCEWVPGENFENGGLSLDKL PRKLKTFRANQRKTTQAEHQLVSRNWKKLSVDRVSKVSIDDQTGVDDVRS LTQPVFRSEAERYGVKRGSTVPLSISRLATKLERKPIENMFEEGLIPSME ALAMLFDQIMGSVQTRWPGPIEMRQLYASLFGAFRRRRSLLLLNYQSQLR FEELPWVHHLEEVRRKQIGTSSDHNLDIFCDLIRKCISKWPEVMIPNKMV TALDHMARDYGVSTAKGPWIGLLPELAADIFMGGFTSKWYDHATMAKNMM SSLLYGKYYATGAEASPWNEMTRSPHETDPQSKGVQFSTLCAKRAERLKV EGWVARNGAVIEESMILTGQNYPYLLQVLKFYGKNFSSTEVKGISVKCFH RLKKMSKLALDDKNPWQTRLQVTKNVAYGWRQMVALVSIMDQTDIEHFFR QTASLNEAAGGCTLQRALVDLRAAWIASQNESPVRRRPWKPLRGWHSGKH GLWDKSWCEKMKAMVEHS* back to topmRNA from alignment at ScGOVlb_3404:4093934..4096390+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2457bp|location=Sequence derived from alignment at ScGOVlb_3404:4093934..4096390+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGACATCTGAATGCCTATTCTATAATCCTGATGATGACAGTTATTCGCA
GAGAGAAGCTGAGAAGTTCCGACGTTGGTCCGCGTTGTTTGCTAATGTCC
TGAGCGGCGTCGTTAGAATTGGTTCAAGAACTCCGATTCGAAACAAGCCC
ATATTCCTTACTCCTGAAGTTCTTCCAGGCGGGTTTGCCAGTGGTCGTTT
TTCAGCGGGAGGAAATCTTGCTGATTTCGAAAGGGAACTGGTTGCCAAAA
ACCACTTGGAAGTTCGAACCTCCGTAAATGAACGAGACGTTTGGCTGCAG
AATTCACGAAAATCTTTGAACTTGCATTTTTTGTCTGCAGAGGGATTGCG
TGAACTGTACCAATTTCTCGAGTCTGGAAAGTATCATTGCGTGTATCCAG
AAGAAGCTGCTCTCCTTGTCGTGGTATGGATGCTCAAACGTGGGGACGCA
GAGTTGGCTCGTGGTTTGGTGAACACCATCATGCCGTATTTTGGAGACGT
TCGTTTTTACCCACGACCTTCATCGGCACCTATAAGTTTAGATTTGAAGT
GCAGTTTGCTCTCTGTCGGCGCATTTAAGAGAGAGATTTCTGATATGCGA
ATATCGAAAGGTAGTTTTTCGTATGCTGTGAACAAACTAATTGTCGAGGA
CTTCGCCCCCAACTACGATGGACTTCTGTCATTGTTGCTAGCTACTTGCA
ATAGTGATCTGATTCCTTTCAAATCTCGACTTTCAAATAACATGGTTGCG
GCCTTCACAACGCTTTTCAAAAACTTTGAGCAAATTCAGAGAGTGTATAA
TGCTTTCTTTGATATGGCAAAGCGTCCAAAAAGGGAAATGAAGCAGCTTG
GAGACTCACGGAATTGCGGTAAATTGTTGAGAATTACGAAGAACCTTATA
GAAAGCAAATCAAAACGGCTTTCAAGACAAGACAAGATTGTGGCGCATCA
GATACTGGTTCAAATTCGAGATGACTCAAGGCGAGGACTGCCTTGCGAAT
GGGTGCCGGGTGAGAACTTCGAAAACGGGGGGTTAAGTTTGGATAAACTT
CCGAGAAAACTAAAAACCTTCAGAGCGAATCAGAGAAAGACTACTCAGGC
GGAACATCAGTTGGTTTCACGTAACTGGAAAAAGCTCTCGGTAGACCGAG
TTTCCAAGGTTAGTATAGATGATCAAACTGGAGTTGATGATGTTCGGTCA
TTGACCCAGCCCGTTTTTCGGAGTGAAGCAGAGCGCTATGGAGTTAAGCG
TGGCAGCACAGTGCCGCTATCAATTTCTCGACTCGCGACAAAGCTCGAGA
GGAAACCTATTGAGAACATGTTTGAGGAAGGATTGATACCTTCAATGGAA
GCCTTAGCCATGTTGTTCGATCAAATTATGGGGTCTGTGCAGACACGATG
GCCGGGGCCCATTGAGATGAGGCAACTATATGCATCACTTTTTGGAGCTT
TTCGTCGCCGCCGATCTCTTCTACTACTAAATTACCAGTCGCAACTAAGA
TTTGAAGAACTTCCGTGGGTGCATCATCTCGAAGAGGTTCGGCGCAAACA
AATTGGAACATCGAGTGACCACAACCTTGATATCTTCTGCGATTTGATCC
GAAAATGCATTTCTAAATGGCCTGAAGTCATGATTCCGAACAAGATGGTC
ACCGCCCTGGATCACATGGCTAGAGATTACGGAGTATCAACTGCGAAAGG
CCCGTGGATTGGACTACTTCCAGAGTTAGCAGCGGATATTTTTATGGGTG
GATTCACCTCGAAATGGTACGACCATGCTACCATGGCAAAGAATATGATG
TCGTCCTTGCTCTACGGGAAATACTACGCGACTGGAGCTGAAGCCTCTCC
CTGGAATGAAATGACACGATCGCCGCACGAGACCGATCCACAGAGCAAAG
GAGTGCAATTTTCAACCTTATGTGCAAAACGCGCTGAGCGTCTTAAAGTA
GAGGGATGGGTAGCTCGGAATGGAGCCGTTATCGAAGAATCTATGATTCT
TACCGGCCAGAATTATCCGTACCTTTTGCAAGTCTTAAAGTTCTATGGGA
AAAACTTTAGCAGCACAGAAGTGAAAGGGATAAGTGTTAAATGTTTCCAT
CGTTTAAAGAAGATGTCGAAGCTGGCACTGGACGACAAGAACCCCTGGCA
AACAAGACTGCAGGTCACAAAAAATGTGGCTTACGGTTGGCGTCAAATGG
TGGCTTTGGTTTCCATAATGGATCAAACAGATATAGAGCATTTTTTCCGC
CAGACGGCTTCCCTGAACGAGGCCGCTGGTGGGTGCACTTTGCAAAGGGC
TCTGGTGGACCTACGAGCTGCATGGATAGCATCGCAGAATGAAAGCCCCG
TTCGCCGCCGTCCATGGAAGCCGTTGAGAGGGTGGCACAGTGGCAAGCAC
GGTCTCTGGGATAAATCATGGTGCGAGAAGATGAAAGCAATGGTAGAGCA
TTCATAG back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:4093934..4096390+ >Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2457bp|location=Sequence derived from alignment at ScGOVlb_3404:4093934..4096390+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGACATCTGAATGCCTATTCTATAATCCTGATGATGACAGTTATTCGCA GAGAGAAGCTGAGAAGTTCCGACGTTGGTCCGCGTTGTTTGCTAATGTCC TGAGCGGCGTCGTTAGAATTGGTTCAAGAACTCCGATTCGAAACAAGCCC ATATTCCTTACTCCTGAAGTTCTTCCAGGCGGGTTTGCCAGTGGTCGTTT TTCAGCGGGAGGAAATCTTGCTGATTTCGAAAGGGAACTGGTTGCCAAAA ACCACTTGGAAGTTCGAACCTCCGTAAATGAACGAGACGTTTGGCTGCAG AATTCACGAAAATCTTTGAACTTGCATTTTTTGTCTGCAGAGGGATTGCG TGAACTGTACCAATTTCTCGAGTCTGGAAAGTATCATTGCGTGTATCCAG AAGAAGCTGCTCTCCTTGTCGTGGTATGGATGCTCAAACGTGGGGACGCA GAGTTGGCTCGTGGTTTGGTGAACACCATCATGCCGTATTTTGGAGACGT TCGTTTTTACCCACGACCTTCATCGGCACCTATAAGTTTAGATTTGAAGT GCAGTTTGCTCTCTGTCGGCGCATTTAAGAGAGAGATTTCTGATATGCGA ATATCGAAAGGTAGTTTTTCGTATGCTGTGAACAAACTAATTGTCGAGGA CTTCGCCCCCAACTACGATGGACTTCTGTCATTGTTGCTAGCTACTTGCA ATAGTGATCTGATTCCTTTCAAATCTCGACTTTCAAATAACATGGTTGCG GCCTTCACAACGCTTTTCAAAAACTTTGAGCAAATTCAGAGAGTGTATAA TGCTTTCTTTGATATGGCAAAGCGTCCAAAAAGGGAAATGAAGCAGCTTG GAGACTCACGGAATTGCGGTAAATTGTTGAGAATTACGAAGAACCTTATA GAAAGCAAATCAAAACGGCTTTCAAGACAAGACAAGATTGTGGCGCATCA GATACTGGTTCAAATTCGAGATGACTCAAGGCGAGGACTGCCTTGCGAAT GGGTGCCGGGTGAGAACTTCGAAAACGGGGGGTTAAGTTTGGATAAACTT CCGAGAAAACTAAAAACCTTCAGAGCGAATCAGAGAAAGACTACTCAGGC GGAACATCAGTTGGTTTCACGTAACTGGAAAAAGCTCTCGGTAGACCGAG TTTCCAAGGTTAGTATAGATGATCAAACTGGAGTTGATGATGTTCGGTCA TTGACCCAGCCCGTTTTTCGGAGTGAAGCAGAGCGCTATGGAGTTAAGCG TGGCAGCACAGTGCCGCTATCAATTTCTCGACTCGCGACAAAGCTCGAGA GGAAACCTATTGAGAACATGTTTGAGGAAGGATTGATACCTTCAATGGAA GCCTTAGCCATGTTGTTCGATCAAATTATGGGGTCTGTGCAGACACGATG GCCGGGGCCCATTGAGATGAGGCAACTATATGCATCACTTTTTGGAGCTT TTCGTCGCCGCCGATCTCTTCTACTACTAAATTACCAGTCGCAACTAAGA TTTGAAGAACTTCCGTGGGTGCATCATCTCGAAGAGGTTCGGCGCAAACA AATTGGAACATCGAGTGACCACAACCTTGATATCTTCTGCGATTTGATCC GAAAATGCATTTCTAAATGGCCTGAAGTCATGATTCCGAACAAGATGGTC ACCGCCCTGGATCACATGGCTAGAGATTACGGAGTATCAACTGCGAAAGG CCCGTGGATTGGACTACTTCCAGAGTTAGCAGCGGATATTTTTATGGGTG GATTCACCTCGAAATGGTACGACCATGCTACCATGGCAAAGAATATGATG TCGTCCTTGCTCTACGGGAAATACTACGCGACTGGAGCTGAAGCCTCTCC CTGGAATGAAATGACACGATCGCCGCACGAGACCGATCCACAGAGCAAAG GAGTGCAATTTTCAACCTTATGTGCAAAACGCGCTGAGCGTCTTAAAGTA GAGGGATGGGTAGCTCGGAATGGAGCCGTTATCGAAGAATCTATGATTCT TACCGGCCAGAATTATCCGTACCTTTTGCAAGTCTTAAAGTTCTATGGGA AAAACTTTAGCAGCACAGAAGTGAAAGGGATAAGTGTTAAATGTTTCCAT CGTTTAAAGAAGATGTCGAAGCTGGCACTGGACGACAAGAACCCCTGGCA AACAAGACTGCAGGTCACAAAAAATGTGGCTTACGGTTGGCGTCAAATGG TGGCTTTGGTTTCCATAATGGATCAAACAGATATAGAGCATTTTTTCCGC CAGACGGCTTCCCTGAACGAGGCCGCTGGTGGGTGCACTTTGCAAAGGGC TCTGGTGGACCTACGAGCTGCATGGATAGCATCGCAGAATGAAAGCCCCG TTCGCCGCCGTCCATGGAAGCCGTTGAGAGGGTGGCACAGTGGCAAGCAC GGTCTCTGGGATAAATCATGGTGCGAGAAGATGAAAGCAATGGTAGAGCA TTCATAG back to top
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