Gvermi12456.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12456.t1
Unique NameGvermi12456.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4905756..4906751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9694.XP_007078759.1
PFAMsSulfotransfer_1
Max annot lvl33208|Metazoa
KEGG rclassRC00007,RC00128,RC00231,RC00341,RC00610
KEGG koko:K01014,ko:K01015,ko:K01016,ko:K01025,ko:K16949
KEGG ReactionR00629,R01242,R01861,R02350,R03405,R08977,R08978
KEGG Pathwayko00140,ko05204,map00140,map05204
GOsGO:0003674,GO:0003824,GO:0004062,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008146,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016782,GO:0034930,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0051923
Evalue3.92e-12
EggNOG OGsKOG1584@1|root,KOG1584@2759|Eukaryota,394HT@33154|Opisthokonta,3BI89@33208|Metazoa,3CWR8@33213|Bilateria,483TN@7711|Chordata,48V69@7742|Vertebrata,3JF26@40674|Mammalia,3EM9T@33554|Carnivora
EC2.8.2.1,2.8.2.2,2.8.2.3,2.8.2.4
DescriptionBelongs to the sulfotransferase 1 family
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12456Gvermi12456Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4905756..4906751 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12456.t1.start1Gvermi12456.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4905756..4905758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12456.t1.CDS1Gvermi12456.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4905756..4906751 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12456.t1.exon1Gvermi12456.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4905756..4906751 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12456.t1.stop1Gvermi12456.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4906749..4906751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12456.t1Gvermi12456.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4905756..4906751 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12456.t1 ID=Gvermi12456.t1|Name=Gvermi12456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=332bp
MSTSAAESTADVILKEYFTFLSKLRNSFNDPAEGIPVEDVVLASSFASGS
NLTQHMVYQILVAANRVPTDPDGSDYIDTTEVVPVSELRNFMKLKEPHHR
SDPQVWKTHLVMTPFQKYEGYEQRKYIYCIRNPLEVCRSFLDFSGEWFTG
MSLSDPAVREVIYPQYFMEYFLEAQRLPDGSYPKSFERPSLWFRHVKTWT
ENDVGNTLYLIYEDIIENFPSTISTVAKFLGVQLSEDHLEQVASRCDRSW
MANNPRMKAHVLSKCFGLNVEKSSRTRRLDSLSFRDIELPVFCKEACWNM
FHDAIGIRTYEELVDGLRKRNQKLLAGKRFA*
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spliced messenger RNA

>Gvermi12456.t1 ID=Gvermi12456.t1|Name=Gvermi12456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=996bp|location=Sequence derived from alignment at ScGOVlb_3404:4905756..4906751+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACGAGCGCCGCAGAGTCCACCGCAGATGTCATTTTAAAGGAGTA
CTTCACGTTCCTCTCTAAATTAAGAAATAGTTTCAACGACCCTGCCGAAG
GCATTCCGGTTGAAGATGTGGTTCTAGCATCAAGCTTTGCAAGTGGTTCG
AATCTAACCCAACACATGGTGTATCAAATTCTCGTGGCCGCCAATCGTGT
TCCAACCGACCCTGACGGGAGTGATTACATCGATACCACGGAAGTCGTTC
CCGTATCGGAGCTGCGAAACTTCATGAAGCTCAAAGAGCCACATCACCGT
AGCGATCCGCAGGTGTGGAAAACGCATTTGGTGATGACGCCATTCCAGAA
ATATGAGGGATACGAACAGAGGAAATACATATACTGCATTCGAAATCCTC
TCGAAGTTTGTCGCAGTTTTCTCGACTTCAGTGGTGAGTGGTTCACTGGT
ATGAGTTTGAGCGACCCTGCAGTTCGTGAGGTCATTTACCCGCAATACTT
CATGGAATATTTTCTCGAAGCTCAACGTTTGCCGGACGGTTCGTACCCAA
AGAGCTTTGAGAGGCCCAGCCTTTGGTTCAGGCATGTAAAGACTTGGACT
GAAAACGATGTCGGTAACACTCTGTATCTGATATACGAAGACATTATCGA
GAACTTTCCAAGTACAATTAGTACTGTTGCCAAGTTTCTTGGAGTACAAC
TTTCAGAAGACCATCTTGAACAAGTTGCGAGCAGATGCGATCGCAGCTGG
ATGGCAAACAATCCAAGAATGAAAGCACATGTGTTAAGCAAGTGCTTCGG
ATTGAATGTTGAAAAGTCATCCCGAACCCGTCGTCTGGATTCTTTGAGCT
TCAGGGATATCGAGTTGCCTGTATTTTGCAAGGAGGCTTGCTGGAACATG
TTCCATGATGCGATTGGTATACGGACGTACGAGGAACTTGTCGATGGCTT
GAGAAAAAGAAACCAGAAGCTGTTGGCGGGAAAGCGGTTTGCGTGA
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protein sequence of Gvermi12456.t1

>Gvermi12456.t1 ID=Gvermi12456.t1|Name=Gvermi12456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=332bp
MSTSAAESTADVILKEYFTFLSKLRNSFNDPAEGIPVEDVVLASSFASGS
NLTQHMVYQILVAANRVPTDPDGSDYIDTTEVVPVSELRNFMKLKEPHHR
SDPQVWKTHLVMTPFQKYEGYEQRKYIYCIRNPLEVCRSFLDFSGEWFTG
MSLSDPAVREVIYPQYFMEYFLEAQRLPDGSYPKSFERPSLWFRHVKTWT
ENDVGNTLYLIYEDIIENFPSTISTVAKFLGVQLSEDHLEQVASRCDRSW
MANNPRMKAHVLSKCFGLNVEKSSRTRRLDSLSFRDIELPVFCKEACWNM
FHDAIGIRTYEELVDGLRKRNQKLLAGKRFA*
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mRNA from alignment at ScGOVlb_3404:4905756..4906751+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12456.t1 ID=Gvermi12456.t1|Name=Gvermi12456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=996bp|location=Sequence derived from alignment at ScGOVlb_3404:4905756..4906751+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTACGAGCGCCGCAGAGTCCACCGCAGATGTCATTTTAAAGGAGTA
CTTCACGTTCCTCTCTAAATTAAGAAATAGTTTCAACGACCCTGCCGAAG
GCATTCCGGTTGAAGATGTGGTTCTAGCATCAAGCTTTGCAAGTGGTTCG
AATCTAACCCAACACATGGTGTATCAAATTCTCGTGGCCGCCAATCGTGT
TCCAACCGACCCTGACGGGAGTGATTACATCGATACCACGGAAGTCGTTC
CCGTATCGGAGCTGCGAAACTTCATGAAGCTCAAAGAGCCACATCACCGT
AGCGATCCGCAGGTGTGGAAAACGCATTTGGTGATGACGCCATTCCAGAA
ATATGAGGGATACGAACAGAGGAAATACATATACTGCATTCGAAATCCTC
TCGAAGTTTGTCGCAGTTTTCTCGACTTCAGTGGTGAGTGGTTCACTGGT
ATGAGTTTGAGCGACCCTGCAGTTCGTGAGGTCATTTACCCGCAATACTT
CATGGAATATTTTCTCGAAGCTCAACGTTTGCCGGACGGTTCGTACCCAA
AGAGCTTTGAGAGGCCCAGCCTTTGGTTCAGGCATGTAAAGACTTGGACT
GAAAACGATGTCGGTAACACTCTGTATCTGATATACGAAGACATTATCGA
GAACTTTCCAAGTACAATTAGTACTGTTGCCAAGTTTCTTGGAGTACAAC
TTTCAGAAGACCATCTTGAACAAGTTGCGAGCAGATGCGATCGCAGCTGG
ATGGCAAACAATCCAAGAATGAAAGCACATGTGTTAAGCAAGTGCTTCGG
ATTGAATGTTGAAAAGTCATCCCGAACCCGTCGTCTGGATTCTTTGAGCT
TCAGGGATATCGAGTTGCCTGTATTTTGCAAGGAGGCTTGCTGGAACATG
TTCCATGATGCGATTGGTATACGGACGTACGAGGAACTTGTCGATGGCTT
GAGAAAAAGAAACCAGAAGCTGTTGGCGGGAAAGCGGTTTGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4905756..4906751+

>Gvermi12456.t1 ID=Gvermi12456.t1|Name=Gvermi12456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=996bp|location=Sequence derived from alignment at ScGOVlb_3404:4905756..4906751+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTACGAGCGCCGCAGAGTCCACCGCAGATGTCATTTTAAAGGAGTA
CTTCACGTTCCTCTCTAAATTAAGAAATAGTTTCAACGACCCTGCCGAAG
GCATTCCGGTTGAAGATGTGGTTCTAGCATCAAGCTTTGCAAGTGGTTCG
AATCTAACCCAACACATGGTGTATCAAATTCTCGTGGCCGCCAATCGTGT
TCCAACCGACCCTGACGGGAGTGATTACATCGATACCACGGAAGTCGTTC
CCGTATCGGAGCTGCGAAACTTCATGAAGCTCAAAGAGCCACATCACCGT
AGCGATCCGCAGGTGTGGAAAACGCATTTGGTGATGACGCCATTCCAGAA
ATATGAGGGATACGAACAGAGGAAATACATATACTGCATTCGAAATCCTC
TCGAAGTTTGTCGCAGTTTTCTCGACTTCAGTGGTGAGTGGTTCACTGGT
ATGAGTTTGAGCGACCCTGCAGTTCGTGAGGTCATTTACCCGCAATACTT
CATGGAATATTTTCTCGAAGCTCAACGTTTGCCGGACGGTTCGTACCCAA
AGAGCTTTGAGAGGCCCAGCCTTTGGTTCAGGCATGTAAAGACTTGGACT
GAAAACGATGTCGGTAACACTCTGTATCTGATATACGAAGACATTATCGA
GAACTTTCCAAGTACAATTAGTACTGTTGCCAAGTTTCTTGGAGTACAAC
TTTCAGAAGACCATCTTGAACAAGTTGCGAGCAGATGCGATCGCAGCTGG
ATGGCAAACAATCCAAGAATGAAAGCACATGTGTTAAGCAAGTGCTTCGG
ATTGAATGTTGAAAAGTCATCCCGAACCCGTCGTCTGGATTCTTTGAGCT
TCAGGGATATCGAGTTGCCTGTATTTTGCAAGGAGGCTTGCTGGAACATG
TTCCATGATGCGATTGGTATACGGACGTACGAGGAACTTGTCGATGGCTT
GAGAAAAAGAAACCAGAAGCTGTTGGCGGGAAAGCGGTTTGCGTGA
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