Gvermi12167.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12167.t1
Unique NameGvermi12167.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length747
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3651945..3654185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD17134
PFAMsAnk_2
Max annot lvl2759|Eukaryota
Evalue4.72e-34
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12167Gvermi12167Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3651945..3654185 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12167.t1.stop1Gvermi12167.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3651945..3651947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12167.t1.CDS1Gvermi12167.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3651945..3654185 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12167.t1.exon1Gvermi12167.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3651945..3654185 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12167.t1.start1Gvermi12167.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3654183..3654185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12167.t1Gvermi12167.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3651945..3654185 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12167.t1 ID=Gvermi12167.t1|Name=Gvermi12167.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=747bp
MPVHVLLIEGMSILNSNWYADQLIRTSPYLSPPACIVTRVSFDYGENTQA
VQLAMGLRHYNAIIVCDLSHDQNMFAIALGSCIQSYVRSGGRVAFPTTEG
LNLIPVLKELFDVPWTRSNYGREQWVASPQSAALLSEQFPLQDGQKAADL
QFYLKGCSYRNVPQSDRCFEAQQYQSEYGGRDSNSEYDASVADQDPLTLV
AVRSYYGGHVAYFGDVNCELPTAKLVGAFATAPQKCSPSSLENSEIMRRA
TEAKEEGNIQFRNAEYERALSFYISAQKHLDPITESCKEEYSKVLGNIAE
CWLRLNQWSEAIATSTKALQLHPSNAKAFYRRTRAYLMAARDDINVLKKH
EDGHASAISQLHNLAMKLSDLTMPEADTNQELGNSTFVKRATGILGKSAT
ELKELGNEKFKAGMYEFAVSFYEAALLVGPSNESDHVNILCNLSLCYLRK
EEWKQAAKAANDALAVNPNAEKALMRRAQAYIRLKKFKDAHADVHRLQSI
PRVPWKEMKAISDELKHAMNPAKAERENGSHEQSSEAQSANGVPVNLDRP
VKPWYNGLDQNKRYEWLVDCYRMRLDDEHCWGGELRCGSLYDPDRTADSM
TADFLVFCKLVVAKGALPDTWDWRQFLNHAIDPLHFPFEKSDAEEKYGSE
VFFEGLGFLGSGRSLRFTAKEVYVSDVTNRDEKCEEYNAMCDLVHCRCFH
DTEEVINFRRAKPLFVDVGGMDVWREFLQSMRRHVYRSYSRKKQGV*
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spliced messenger RNA

>Gvermi12167.t1 ID=Gvermi12167.t1|Name=Gvermi12167.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2241bp|location=Sequence derived from alignment at ScGOVlb_3404:3651945..3654185- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGTGCATGTACTTCTCATTGAGGGTATGTCCATACTCAACAGCAA
CTGGTACGCAGACCAGTTAATCAGAACGTCCCCGTATCTCTCCCCCCCAG
CGTGCATCGTCACGCGAGTAAGCTTTGATTACGGCGAGAACACCCAAGCT
GTTCAACTCGCCATGGGCTTACGTCACTATAACGCCATCATTGTTTGCGA
CTTGAGTCACGACCAAAACATGTTTGCAATCGCCCTTGGTTCCTGCATCC
AGAGCTACGTGCGCTCCGGCGGACGCGTTGCTTTTCCCACCACGGAAGGG
CTCAACCTCATTCCGGTTCTCAAAGAGCTCTTTGATGTTCCTTGGACACG
GTCCAATTACGGAAGGGAACAATGGGTTGCGAGTCCACAGTCAGCCGCCC
TCCTCTCGGAACAGTTTCCGCTGCAAGATGGCCAAAAGGCCGCGGATTTG
CAATTCTACCTCAAAGGATGTTCATATAGGAATGTACCGCAGTCTGATCG
TTGTTTTGAAGCACAGCAGTACCAATCCGAGTATGGTGGACGGGACAGTA
ACAGTGAATATGATGCGTCCGTTGCTGACCAAGACCCGCTTACGTTGGTG
GCAGTCCGCAGCTACTATGGTGGACATGTGGCCTACTTTGGCGATGTCAA
CTGTGAACTTCCCACTGCAAAACTCGTCGGTGCCTTTGCCACCGCCCCTC
AAAAATGCTCTCCCTCTTCATTGGAAAACAGCGAAATTATGAGACGTGCC
ACAGAAGCCAAAGAGGAAGGCAATATCCAGTTCAGAAATGCCGAGTATGA
GCGTGCCCTCTCGTTCTACATCTCTGCTCAGAAACATCTTGACCCAATAA
CAGAGAGTTGCAAGGAGGAGTACTCCAAGGTTCTCGGCAACATCGCAGAA
TGCTGGTTGAGATTAAACCAATGGTCGGAAGCTATTGCTACATCCACCAA
AGCACTGCAGTTGCACCCTTCTAATGCCAAGGCTTTCTACCGTAGAACGA
GGGCGTATTTGATGGCCGCTCGCGATGATATTAATGTTCTGAAGAAGCAC
GAAGATGGCCATGCATCTGCCATATCTCAACTCCACAATCTAGCAATGAA
GCTGAGCGATTTGACCATGCCTGAAGCGGACACAAACCAAGAGCTGGGTA
ACTCCACTTTCGTGAAACGGGCAACTGGAATTCTTGGCAAAAGCGCGACA
GAACTCAAAGAGCTTGGTAATGAGAAGTTCAAAGCCGGCATGTATGAATT
TGCTGTCAGTTTCTATGAAGCCGCTTTGCTTGTCGGCCCATCTAATGAAA
GCGACCATGTGAACATCCTTTGCAATTTATCCCTCTGCTATCTTCGTAAG
GAAGAATGGAAACAAGCAGCCAAGGCGGCGAACGATGCGCTAGCAGTCAA
TCCAAATGCGGAGAAGGCATTGATGAGAAGAGCCCAAGCATACATCCGTC
TGAAAAAGTTCAAAGATGCTCATGCAGACGTACACAGATTGCAGTCGATT
CCCAGAGTTCCGTGGAAGGAGATGAAAGCTATTTCGGATGAGCTTAAGCA
CGCAATGAATCCAGCGAAGGCAGAAAGAGAGAATGGGTCACATGAACAGT
CTTCTGAAGCCCAGTCTGCCAACGGGGTTCCCGTGAATCTGGACCGTCCT
GTGAAGCCATGGTACAATGGACTAGACCAGAACAAAAGGTACGAATGGCT
TGTAGATTGTTACAGAATGCGTCTAGATGATGAGCACTGCTGGGGAGGAG
AGTTGCGCTGCGGATCTCTTTATGATCCGGACCGCACCGCAGACAGTATG
ACGGCCGATTTCTTGGTTTTCTGCAAACTTGTTGTGGCAAAAGGTGCACT
TCCTGATACATGGGATTGGAGACAGTTTCTAAACCATGCCATCGATCCTC
TTCATTTTCCATTTGAAAAATCGGACGCTGAAGAGAAGTACGGAAGCGAA
GTTTTCTTCGAGGGTCTCGGGTTTCTTGGGTCGGGGCGAAGCTTACGTTT
CACAGCTAAAGAAGTTTATGTCTCGGATGTCACGAATCGTGATGAGAAAT
GTGAGGAATACAATGCCATGTGTGATTTGGTACACTGCCGATGTTTCCAT
GATACTGAGGAGGTAATCAACTTTCGGCGGGCAAAGCCATTGTTTGTGGA
TGTAGGGGGCATGGACGTGTGGCGAGAGTTTTTGCAATCGATGAGGCGAC
ATGTTTATAGGTCGTACTCTAGAAAGAAACAAGGAGTTTAA
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protein sequence of Gvermi12167.t1

>Gvermi12167.t1 ID=Gvermi12167.t1|Name=Gvermi12167.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=747bp
MPVHVLLIEGMSILNSNWYADQLIRTSPYLSPPACIVTRVSFDYGENTQA
VQLAMGLRHYNAIIVCDLSHDQNMFAIALGSCIQSYVRSGGRVAFPTTEG
LNLIPVLKELFDVPWTRSNYGREQWVASPQSAALLSEQFPLQDGQKAADL
QFYLKGCSYRNVPQSDRCFEAQQYQSEYGGRDSNSEYDASVADQDPLTLV
AVRSYYGGHVAYFGDVNCELPTAKLVGAFATAPQKCSPSSLENSEIMRRA
TEAKEEGNIQFRNAEYERALSFYISAQKHLDPITESCKEEYSKVLGNIAE
CWLRLNQWSEAIATSTKALQLHPSNAKAFYRRTRAYLMAARDDINVLKKH
EDGHASAISQLHNLAMKLSDLTMPEADTNQELGNSTFVKRATGILGKSAT
ELKELGNEKFKAGMYEFAVSFYEAALLVGPSNESDHVNILCNLSLCYLRK
EEWKQAAKAANDALAVNPNAEKALMRRAQAYIRLKKFKDAHADVHRLQSI
PRVPWKEMKAISDELKHAMNPAKAERENGSHEQSSEAQSANGVPVNLDRP
VKPWYNGLDQNKRYEWLVDCYRMRLDDEHCWGGELRCGSLYDPDRTADSM
TADFLVFCKLVVAKGALPDTWDWRQFLNHAIDPLHFPFEKSDAEEKYGSE
VFFEGLGFLGSGRSLRFTAKEVYVSDVTNRDEKCEEYNAMCDLVHCRCFH
DTEEVINFRRAKPLFVDVGGMDVWREFLQSMRRHVYRSYSRKKQGV*
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mRNA from alignment at ScGOVlb_3404:3651945..3654185-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12167.t1 ID=Gvermi12167.t1|Name=Gvermi12167.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2241bp|location=Sequence derived from alignment at ScGOVlb_3404:3651945..3654185- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCAGTGCATGTACTTCTCATTGAGGGTATGTCCATACTCAACAGCAA
CTGGTACGCAGACCAGTTAATCAGAACGTCCCCGTATCTCTCCCCCCCAG
CGTGCATCGTCACGCGAGTAAGCTTTGATTACGGCGAGAACACCCAAGCT
GTTCAACTCGCCATGGGCTTACGTCACTATAACGCCATCATTGTTTGCGA
CTTGAGTCACGACCAAAACATGTTTGCAATCGCCCTTGGTTCCTGCATCC
AGAGCTACGTGCGCTCCGGCGGACGCGTTGCTTTTCCCACCACGGAAGGG
CTCAACCTCATTCCGGTTCTCAAAGAGCTCTTTGATGTTCCTTGGACACG
GTCCAATTACGGAAGGGAACAATGGGTTGCGAGTCCACAGTCAGCCGCCC
TCCTCTCGGAACAGTTTCCGCTGCAAGATGGCCAAAAGGCCGCGGATTTG
CAATTCTACCTCAAAGGATGTTCATATAGGAATGTACCGCAGTCTGATCG
TTGTTTTGAAGCACAGCAGTACCAATCCGAGTATGGTGGACGGGACAGTA
ACAGTGAATATGATGCGTCCGTTGCTGACCAAGACCCGCTTACGTTGGTG
GCAGTCCGCAGCTACTATGGTGGACATGTGGCCTACTTTGGCGATGTCAA
CTGTGAACTTCCCACTGCAAAACTCGTCGGTGCCTTTGCCACCGCCCCTC
AAAAATGCTCTCCCTCTTCATTGGAAAACAGCGAAATTATGAGACGTGCC
ACAGAAGCCAAAGAGGAAGGCAATATCCAGTTCAGAAATGCCGAGTATGA
GCGTGCCCTCTCGTTCTACATCTCTGCTCAGAAACATCTTGACCCAATAA
CAGAGAGTTGCAAGGAGGAGTACTCCAAGGTTCTCGGCAACATCGCAGAA
TGCTGGTTGAGATTAAACCAATGGTCGGAAGCTATTGCTACATCCACCAA
AGCACTGCAGTTGCACCCTTCTAATGCCAAGGCTTTCTACCGTAGAACGA
GGGCGTATTTGATGGCCGCTCGCGATGATATTAATGTTCTGAAGAAGCAC
GAAGATGGCCATGCATCTGCCATATCTCAACTCCACAATCTAGCAATGAA
GCTGAGCGATTTGACCATGCCTGAAGCGGACACAAACCAAGAGCTGGGTA
ACTCCACTTTCGTGAAACGGGCAACTGGAATTCTTGGCAAAAGCGCGACA
GAACTCAAAGAGCTTGGTAATGAGAAGTTCAAAGCCGGCATGTATGAATT
TGCTGTCAGTTTCTATGAAGCCGCTTTGCTTGTCGGCCCATCTAATGAAA
GCGACCATGTGAACATCCTTTGCAATTTATCCCTCTGCTATCTTCGTAAG
GAAGAATGGAAACAAGCAGCCAAGGCGGCGAACGATGCGCTAGCAGTCAA
TCCAAATGCGGAGAAGGCATTGATGAGAAGAGCCCAAGCATACATCCGTC
TGAAAAAGTTCAAAGATGCTCATGCAGACGTACACAGATTGCAGTCGATT
CCCAGAGTTCCGTGGAAGGAGATGAAAGCTATTTCGGATGAGCTTAAGCA
CGCAATGAATCCAGCGAAGGCAGAAAGAGAGAATGGGTCACATGAACAGT
CTTCTGAAGCCCAGTCTGCCAACGGGGTTCCCGTGAATCTGGACCGTCCT
GTGAAGCCATGGTACAATGGACTAGACCAGAACAAAAGGTACGAATGGCT
TGTAGATTGTTACAGAATGCGTCTAGATGATGAGCACTGCTGGGGAGGAG
AGTTGCGCTGCGGATCTCTTTATGATCCGGACCGCACCGCAGACAGTATG
ACGGCCGATTTCTTGGTTTTCTGCAAACTTGTTGTGGCAAAAGGTGCACT
TCCTGATACATGGGATTGGAGACAGTTTCTAAACCATGCCATCGATCCTC
TTCATTTTCCATTTGAAAAATCGGACGCTGAAGAGAAGTACGGAAGCGAA
GTTTTCTTCGAGGGTCTCGGGTTTCTTGGGTCGGGGCGAAGCTTACGTTT
CACAGCTAAAGAAGTTTATGTCTCGGATGTCACGAATCGTGATGAGAAAT
GTGAGGAATACAATGCCATGTGTGATTTGGTACACTGCCGATGTTTCCAT
GATACTGAGGAGGTAATCAACTTTCGGCGGGCAAAGCCATTGTTTGTGGA
TGTAGGGGGCATGGACGTGTGGCGAGAGTTTTTGCAATCGATGAGGCGAC
ATGTTTATAGGTCGTACTCTAGAAAGAAACAAGGAGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3651945..3654185-

>Gvermi12167.t1 ID=Gvermi12167.t1|Name=Gvermi12167.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2241bp|location=Sequence derived from alignment at ScGOVlb_3404:3651945..3654185- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCAGTGCATGTACTTCTCATTGAGGGTATGTCCATACTCAACAGCAA
CTGGTACGCAGACCAGTTAATCAGAACGTCCCCGTATCTCTCCCCCCCAG
CGTGCATCGTCACGCGAGTAAGCTTTGATTACGGCGAGAACACCCAAGCT
GTTCAACTCGCCATGGGCTTACGTCACTATAACGCCATCATTGTTTGCGA
CTTGAGTCACGACCAAAACATGTTTGCAATCGCCCTTGGTTCCTGCATCC
AGAGCTACGTGCGCTCCGGCGGACGCGTTGCTTTTCCCACCACGGAAGGG
CTCAACCTCATTCCGGTTCTCAAAGAGCTCTTTGATGTTCCTTGGACACG
GTCCAATTACGGAAGGGAACAATGGGTTGCGAGTCCACAGTCAGCCGCCC
TCCTCTCGGAACAGTTTCCGCTGCAAGATGGCCAAAAGGCCGCGGATTTG
CAATTCTACCTCAAAGGATGTTCATATAGGAATGTACCGCAGTCTGATCG
TTGTTTTGAAGCACAGCAGTACCAATCCGAGTATGGTGGACGGGACAGTA
ACAGTGAATATGATGCGTCCGTTGCTGACCAAGACCCGCTTACGTTGGTG
GCAGTCCGCAGCTACTATGGTGGACATGTGGCCTACTTTGGCGATGTCAA
CTGTGAACTTCCCACTGCAAAACTCGTCGGTGCCTTTGCCACCGCCCCTC
AAAAATGCTCTCCCTCTTCATTGGAAAACAGCGAAATTATGAGACGTGCC
ACAGAAGCCAAAGAGGAAGGCAATATCCAGTTCAGAAATGCCGAGTATGA
GCGTGCCCTCTCGTTCTACATCTCTGCTCAGAAACATCTTGACCCAATAA
CAGAGAGTTGCAAGGAGGAGTACTCCAAGGTTCTCGGCAACATCGCAGAA
TGCTGGTTGAGATTAAACCAATGGTCGGAAGCTATTGCTACATCCACCAA
AGCACTGCAGTTGCACCCTTCTAATGCCAAGGCTTTCTACCGTAGAACGA
GGGCGTATTTGATGGCCGCTCGCGATGATATTAATGTTCTGAAGAAGCAC
GAAGATGGCCATGCATCTGCCATATCTCAACTCCACAATCTAGCAATGAA
GCTGAGCGATTTGACCATGCCTGAAGCGGACACAAACCAAGAGCTGGGTA
ACTCCACTTTCGTGAAACGGGCAACTGGAATTCTTGGCAAAAGCGCGACA
GAACTCAAAGAGCTTGGTAATGAGAAGTTCAAAGCCGGCATGTATGAATT
TGCTGTCAGTTTCTATGAAGCCGCTTTGCTTGTCGGCCCATCTAATGAAA
GCGACCATGTGAACATCCTTTGCAATTTATCCCTCTGCTATCTTCGTAAG
GAAGAATGGAAACAAGCAGCCAAGGCGGCGAACGATGCGCTAGCAGTCAA
TCCAAATGCGGAGAAGGCATTGATGAGAAGAGCCCAAGCATACATCCGTC
TGAAAAAGTTCAAAGATGCTCATGCAGACGTACACAGATTGCAGTCGATT
CCCAGAGTTCCGTGGAAGGAGATGAAAGCTATTTCGGATGAGCTTAAGCA
CGCAATGAATCCAGCGAAGGCAGAAAGAGAGAATGGGTCACATGAACAGT
CTTCTGAAGCCCAGTCTGCCAACGGGGTTCCCGTGAATCTGGACCGTCCT
GTGAAGCCATGGTACAATGGACTAGACCAGAACAAAAGGTACGAATGGCT
TGTAGATTGTTACAGAATGCGTCTAGATGATGAGCACTGCTGGGGAGGAG
AGTTGCGCTGCGGATCTCTTTATGATCCGGACCGCACCGCAGACAGTATG
ACGGCCGATTTCTTGGTTTTCTGCAAACTTGTTGTGGCAAAAGGTGCACT
TCCTGATACATGGGATTGGAGACAGTTTCTAAACCATGCCATCGATCCTC
TTCATTTTCCATTTGAAAAATCGGACGCTGAAGAGAAGTACGGAAGCGAA
GTTTTCTTCGAGGGTCTCGGGTTTCTTGGGTCGGGGCGAAGCTTACGTTT
CACAGCTAAAGAAGTTTATGTCTCGGATGTCACGAATCGTGATGAGAAAT
GTGAGGAATACAATGCCATGTGTGATTTGGTACACTGCCGATGTTTCCAT
GATACTGAGGAGGTAATCAACTTTCGGCGGGCAAAGCCATTGTTTGTGGA
TGTAGGGGGCATGGACGTGTGGCGAGAGTTTTTGCAATCGATGAGGCGAC
ATGTTTATAGGTCGTACTCTAGAAAGAAACAAGGAGTTTAA
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