Gvermi12206.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12206.t1
Unique Name	Gvermi12206.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	550

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3846237..3847886 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1170562.Cal6303_5059
Preferred name	crtQ
PFAMs	Amino_oxidase
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01214,RC01959
KEGG ko	ko:K00514
KEGG Reaction	R04798,R04800,R07511,R09656,R09658
KEGG Pathway	ko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG Module	M00097
Evalue	2.43e-225
EggNOG OGs	COG3349@1\|root,COG3349@2\|Bacteria,1G09Q@1117\|Cyanobacteria,1HKFZ@1161\|Nostocales
EC	1.3.5.6
Description	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12206	Gvermi12206	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3846237..3847886 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12206.t1.start1	Gvermi12206.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3846237..3846239 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12206.t1.CDS1	Gvermi12206.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3846237..3847886 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12206.t1.exon1	Gvermi12206.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3846237..3847886 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12206.t1.stop1	Gvermi12206.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3847884..3847886 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12206.t1	Gvermi12206.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3846237..3847886 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3846237..3847886+
coding sequence from alignment at ScGOVlb_3404:3846237..3847886+

mRNA sequence

>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=550bp
MRRRPAFASAAALPLRAARAPSAAQPLPPRARRAARAARAPRLSLAADVW
NVNAVPRADASGASVAVVGAGLAGLITAMELVDAGCRVSLYDTRPFAGGK
VGSWVDRRGNHIEMGLHVFFGCYYNLFDVMAKVGALKHLLLKEHTHQFIN
AGAIVGELDFRLGTVGAPFNGLKAFSATSQLGIVDKVRNALALGSSVIVR
GLLDFDGAMHQIRALDNISFSDWFISKGGTRASIQRMWDPIAYALGFISC
DNMSARCMLTIFQLFAARSEASVLRMLEGSPDKFLTAPIVKYIEQRGATV
NLRTKVRQVLYDTDDHGQTRVTGLLVADASRDELVQADYYVAACDVAGAK
RLIPEEWRQRYDLFQKMYQLDAVPVVTVQLRFDGWVTELQDDEKRMRVGS
GRAYGINNLLYSPDADFSCFADLALTSPTDYYKEGEGSLMQVVLTPGDPY
ISKSDQQIVAAVLEQLRTLFPSARQLTCTWSSVVKLVESLYREEPGKDRF
RPSQKTPVENFFLAGSYTYQDYIDSMEGAVKSGKLAATALLETIGAKAC*

spliced messenger RNA

>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:3846237..3847886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgccgccgccctgcgttcgcgtccgccgccgcgctcccgctacgcgc
cgcgcgcgccccgagcgccgcgcagccgctgccgccgcgcgcgcgccgcg
ccgcgcgcgccgcgcgcgcgccgcgccTGTCGCTGGCCGCCGACGTGTGG
AACGTCAACGCCGTGCCGCGCGCCGACGCCAGCGGCGCCTCCGTCGCCGT
CGTCGGCGCCGGCCTGGCCGGCCTCATCACCGCCATGGAGCTCGTCGACG
CCGGCTGCCGCGTCTCGCTGTACGACACGCGCCCGTTTGCGGGCGGCAAG
GTGGGCAGCTGGGTCGACCGCCGCGGCAACCACATCGAGATGGGCCTGCA
CGTCTTCTTCGGCTGCTACTACAACCTGTTCGACGTCATGGCCAAGGTCG
GCGCCCTCAAGCACCTGCTGCTCAAGGAGCACACGCACCAGTTCATCAAC
GCCGGTGCCATCGTGGGCGAGCTCGACTTCCGCCTGGGCACCGTGGGTGC
CCCGTTCAACGGGCTCAAGGCCTTTAGCGCCACCTCGCAGCTCGGCATTG
TCGACAAGGTGCGCAACGCCCTCGCCCTGGGCAGCTCTGTCATTGTGCGC
GGCCTGCTTGACTTTGACGGCGCCATGCACCAAATCCGAGCCTTGGACAA
CATTTCCTTCTCCGACTGGTTCATTTCCAAGGGCGGCACCCGCGCCTCCA
TCCAACGCATGTGGGACCCCATTGCGTACGCCCTGGGCTTCATCAGCTGC
GACAACATGTCCGCCAGATGCATGCTCACCATTTTCCAGCTCTTCGCCGC
CAGGTCCGAGGCCTCCGTCCTCAGGATGCTGGAAGGCAGCCCGGACAAGT
TCCTCACCGCCCCTATCGTCAAGTACATTGAGCAGCGCGGCGCCACAGTC
AACCTGCGCACCAAGGTACGCCAAGTTTTGTACGACACCGATGACCACGG
CCAAACGCGAGTGACGGGGCTGCTCGTGGCAGACGCCTCGCGCGACGAGC
TGGTGCAAGCCGATTACTACGTGGCCGCCTGCGACGTTGCCGGCGCAAAA
CGGCTCATCCCCGAAGAGTGGCGCCAGCGTTACGACCTGTTCCAAAAGAT
GTACCAATTGGACGCCGTCCCGGTCGTCACCGTGCAGCTGCGCTTTGACG
GCTGGGTCACAGAACTGCAGGACGACGAGAAGCGAATGCGCGTGGGCAGT
GGCCGCGCGTACGGAATCAACAACCTGCTCTACTCTCCAGATGCTGACTT
TTCGTGCTTTGCGGACCTGGCGCTCACGTCGCCCACTGACTACTACAAGG
AGGGCGAGGGCAGTCTCATGCAGGTGGTGCTCACGCCGGGAGACCCCTAC
ATAAGCAAGAGCGACCAGCAGATCGTGGCGGCCGTGCTAGAACAGCTCAG
GACGCTGTTCCCCAGTGCGCGCCAGCTCACGTGCACGTGGAGTTCAGTTG
TGAAGCTGGTGGAGAGTCTGTACAGAGAAGAGCCTGGTAAGGACCGCTTC
CGACCGTCGCAGAAGACGCCCGTCGAAAACTTTTTCCTGGCTGGCAGCTA
CACATATCAGGACTACATCGACTCGATGGAGGGCGCGGTGAAGAGCGGCA
AACTGGCCGCAACGGCGCTGCTCGAGACAATCGGCGCCAAGGCTTGTTGA

protein sequence of Gvermi12206.t1

>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=550bp
MRRRPAFASAAALPLRAARAPSAAQPLPPRARRAARAARAPRLSLAADVW
NVNAVPRADASGASVAVVGAGLAGLITAMELVDAGCRVSLYDTRPFAGGK
VGSWVDRRGNHIEMGLHVFFGCYYNLFDVMAKVGALKHLLLKEHTHQFIN
AGAIVGELDFRLGTVGAPFNGLKAFSATSQLGIVDKVRNALALGSSVIVR
GLLDFDGAMHQIRALDNISFSDWFISKGGTRASIQRMWDPIAYALGFISC
DNMSARCMLTIFQLFAARSEASVLRMLEGSPDKFLTAPIVKYIEQRGATV
NLRTKVRQVLYDTDDHGQTRVTGLLVADASRDELVQADYYVAACDVAGAK
RLIPEEWRQRYDLFQKMYQLDAVPVVTVQLRFDGWVTELQDDEKRMRVGS
GRAYGINNLLYSPDADFSCFADLALTSPTDYYKEGEGSLMQVVLTPGDPY
ISKSDQQIVAAVLEQLRTLFPSARQLTCTWSSVVKLVESLYREEPGKDRF
RPSQKTPVENFFLAGSYTYQDYIDSMEGAVKSGKLAATALLETIGAKAC*

mRNA from alignment at ScGOVlb_3404:3846237..3847886+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:3846237..3847886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgccgccgccctgcgttcgcgtccgccgccgcgctcccgctacgcgc
cgcgcgcgccccgagcgccgcgcagccgctgccgccgcgcgcgcgccgcg
ccgcgcgcgccgcgcgcgcgccgcgccTGTCGCTGGCCGCCGACGTGTGG
AACGTCAACGCCGTGCCGCGCGCCGACGCCAGCGGCGCCTCCGTCGCCGT
CGTCGGCGCCGGCCTGGCCGGCCTCATCACCGCCATGGAGCTCGTCGACG
CCGGCTGCCGCGTCTCGCTGTACGACACGCGCCCGTTTGCGGGCGGCAAG
GTGGGCAGCTGGGTCGACCGCCGCGGCAACCACATCGAGATGGGCCTGCA
CGTCTTCTTCGGCTGCTACTACAACCTGTTCGACGTCATGGCCAAGGTCG
GCGCCCTCAAGCACCTGCTGCTCAAGGAGCACACGCACCAGTTCATCAAC
GCCGGTGCCATCGTGGGCGAGCTCGACTTCCGCCTGGGCACCGTGGGTGC
CCCGTTCAACGGGCTCAAGGCCTTTAGCGCCACCTCGCAGCTCGGCATTG
TCGACAAGGTGCGCAACGCCCTCGCCCTGGGCAGCTCTGTCATTGTGCGC
GGCCTGCTTGACTTTGACGGCGCCATGCACCAAATCCGAGCCTTGGACAA
CATTTCCTTCTCCGACTGGTTCATTTCCAAGGGCGGCACCCGCGCCTCCA
TCCAACGCATGTGGGACCCCATTGCGTACGCCCTGGGCTTCATCAGCTGC
GACAACATGTCCGCCAGATGCATGCTCACCATTTTCCAGCTCTTCGCCGC
CAGGTCCGAGGCCTCCGTCCTCAGGATGCTGGAAGGCAGCCCGGACAAGT
TCCTCACCGCCCCTATCGTCAAGTACATTGAGCAGCGCGGCGCCACAGTC
AACCTGCGCACCAAGGTACGCCAAGTTTTGTACGACACCGATGACCACGG
CCAAACGCGAGTGACGGGGCTGCTCGTGGCAGACGCCTCGCGCGACGAGC
TGGTGCAAGCCGATTACTACGTGGCCGCCTGCGACGTTGCCGGCGCAAAA
CGGCTCATCCCCGAAGAGTGGCGCCAGCGTTACGACCTGTTCCAAAAGAT
GTACCAATTGGACGCCGTCCCGGTCGTCACCGTGCAGCTGCGCTTTGACG
GCTGGGTCACAGAACTGCAGGACGACGAGAAGCGAATGCGCGTGGGCAGT
GGCCGCGCGTACGGAATCAACAACCTGCTCTACTCTCCAGATGCTGACTT
TTCGTGCTTTGCGGACCTGGCGCTCACGTCGCCCACTGACTACTACAAGG
AGGGCGAGGGCAGTCTCATGCAGGTGGTGCTCACGCCGGGAGACCCCTAC
ATAAGCAAGAGCGACCAGCAGATCGTGGCGGCCGTGCTAGAACAGCTCAG
GACGCTGTTCCCCAGTGCGCGCCAGCTCACGTGCACGTGGAGTTCAGTTG
TGAAGCTGGTGGAGAGTCTGTACAGAGAAGAGCCTGGTAAGGACCGCTTC
CGACCGTCGCAGAAGACGCCCGTCGAAAACTTTTTCCTGGCTGGCAGCTA
CACATATCAGGACTACATCGACTCGATGGAGGGCGCGGTGAAGAGCGGCA
AACTGGCCGCAACGGCGCTGCTCGAGACAATCGGCGCCAAGGCTTGTTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3846237..3847886+

>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:3846237..3847886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgccgccgccctgcgttcgcgtccgccgccgcgctcccgctacgcgc
cgcgcgcgccccgagcgccgcgcagccgctgccgccgcgcgcgcgccgcg
ccgcgcgcgccgcgcgcgcgccgcgccTGTCGCTGGCCGCCGACGTGTGG
AACGTCAACGCCGTGCCGCGCGCCGACGCCAGCGGCGCCTCCGTCGCCGT
CGTCGGCGCCGGCCTGGCCGGCCTCATCACCGCCATGGAGCTCGTCGACG
CCGGCTGCCGCGTCTCGCTGTACGACACGCGCCCGTTTGCGGGCGGCAAG
GTGGGCAGCTGGGTCGACCGCCGCGGCAACCACATCGAGATGGGCCTGCA
CGTCTTCTTCGGCTGCTACTACAACCTGTTCGACGTCATGGCCAAGGTCG
GCGCCCTCAAGCACCTGCTGCTCAAGGAGCACACGCACCAGTTCATCAAC
GCCGGTGCCATCGTGGGCGAGCTCGACTTCCGCCTGGGCACCGTGGGTGC
CCCGTTCAACGGGCTCAAGGCCTTTAGCGCCACCTCGCAGCTCGGCATTG
TCGACAAGGTGCGCAACGCCCTCGCCCTGGGCAGCTCTGTCATTGTGCGC
GGCCTGCTTGACTTTGACGGCGCCATGCACCAAATCCGAGCCTTGGACAA
CATTTCCTTCTCCGACTGGTTCATTTCCAAGGGCGGCACCCGCGCCTCCA
TCCAACGCATGTGGGACCCCATTGCGTACGCCCTGGGCTTCATCAGCTGC
GACAACATGTCCGCCAGATGCATGCTCACCATTTTCCAGCTCTTCGCCGC
CAGGTCCGAGGCCTCCGTCCTCAGGATGCTGGAAGGCAGCCCGGACAAGT
TCCTCACCGCCCCTATCGTCAAGTACATTGAGCAGCGCGGCGCCACAGTC
AACCTGCGCACCAAGGTACGCCAAGTTTTGTACGACACCGATGACCACGG
CCAAACGCGAGTGACGGGGCTGCTCGTGGCAGACGCCTCGCGCGACGAGC
TGGTGCAAGCCGATTACTACGTGGCCGCCTGCGACGTTGCCGGCGCAAAA
CGGCTCATCCCCGAAGAGTGGCGCCAGCGTTACGACCTGTTCCAAAAGAT
GTACCAATTGGACGCCGTCCCGGTCGTCACCGTGCAGCTGCGCTTTGACG
GCTGGGTCACAGAACTGCAGGACGACGAGAAGCGAATGCGCGTGGGCAGT
GGCCGCGCGTACGGAATCAACAACCTGCTCTACTCTCCAGATGCTGACTT
TTCGTGCTTTGCGGACCTGGCGCTCACGTCGCCCACTGACTACTACAAGG
AGGGCGAGGGCAGTCTCATGCAGGTGGTGCTCACGCCGGGAGACCCCTAC
ATAAGCAAGAGCGACCAGCAGATCGTGGCGGCCGTGCTAGAACAGCTCAG
GACGCTGTTCCCCAGTGCGCGCCAGCTCACGTGCACGTGGAGTTCAGTTG
TGAAGCTGGTGGAGAGTCTGTACAGAGAAGAGCCTGGTAAGGACCGCTTC
CGACCGTCGCAGAAGACGCCCGTCGAAAACTTTTTCCTGGCTGGCAGCTA
CACATATCAGGACTACATCGACTCGATGGAGGGCGCGGTGAAGAGCGGCA
AACTGGCCGCAACGGCGCTGCTCGAGACAATCGGCGCCAAGGCTTGTTGA