Gvermi12237.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12237.t1
Unique NameGvermi12237.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3946629..3948161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12237Gvermi12237Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3946629..3948161 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12237.t1.start1Gvermi12237.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3946629..3946631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12237.t1.CDS1Gvermi12237.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3946629..3948161 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12237.t1.exon1Gvermi12237.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3946629..3948161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12237.t1.stop1Gvermi12237.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3948159..3948161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12237.t1Gvermi12237.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3946629..3948161 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12237.t1 ID=Gvermi12237.t1|Name=Gvermi12237.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=511bp
MNAVSDSDSVHSAAPNKHLHLFRAPLLFQPHEFTEASRSACLPLPVLLLL
RLFSAAALVGHLVFFSLRADFRFTEYLTWNYAALTLALLLALTCSLLDLI
HDHPDQQDNEPTLLTNLTEQNTPDDVERQSHAPAPFAPPKWLLLFTRFTV
PVYQLAVSATVFGAVVFWAAIYFNASIPLTYALLTQAVAAPAIAVLDFLL
SFRMNFRLIYIVPYLIYNAAYLAVAYTLTERAYLFIFLRRDASRSAFAAK
AAGLAAASVFTAVLLYVITALRYLRATRSLPEAISARSKSRRVLEDRAES
ASRSVASSHSHHSDLSHLGLRRVPSNSFYGTAEFVQVENEDQLDHSASLS
GRDRASVPINLGGDASGRSSWFRSSSARLTASLSGGSAGDGRPGFARTSS
LSSVWDDMQQPPPQKEDEVFSMPACYNAAKQADMVKLPHVPRVDSGKQIP
RIASRQASGKFSRTSSSNSVRPGPAPHLPSSAFTASMLARNSSAHRADGK
RRRGGHVGPR*
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spliced messenger RNA

>Gvermi12237.t1 ID=Gvermi12237.t1|Name=Gvermi12237.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_3404:3946629..3948161+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCCGTCTCGGATTCCGACTCCGTGCATTCGGCCGCGCCCAACAA
GCATCTGCACCTCTTTCGCGCCCCGCTTCTGTTCCAGCCGCACGAGTTTA
CCGAGGCCTCGCGTTCCGCCTGCCTCCCCTTGCCAGTGCTGCTGCTTCTG
CGTCTGTTTTCCGCCGCCGCCCTCGTCGGCCATCTCGTCTTCTTCTCGCT
GCGCGCCGACTTCCGCTTCACTGAGTACCTAACTTGGAATTACGCTGCCC
TCACTCTCGCTTTGCTGCTCGCCCTCACCTGTTCCCTCCTGGACCTCATC
CACGACCACCCTGATCAACAAGACAACGAACCAACACTACTCACTAACTT
AACCGAACAAAACACCCCCGATGACGTCGAGCGCCAGTCCCACGCCCCCG
CCCCGTTCGCGCCACCCAAATGGCTTCTCCTCTTCACTCGCTTCACCGTT
CCAGTGTACCAGCTCGCCGTATCTGCCACCGTCTTCGGCGCCGTCGTCTT
CTGGGCAGCCATCTACTTTAACGCTTCCATCCCACTCACGTACGCACTCC
TCACGCAGGCCGTCGCCGCCCCTGCCATCGCCGTCCTCGATTTCCTCCTT
TCCTTCCGAATGAATTTCCGTCTCATCTACATCGTCCCCTACCTCATATA
CAATGCAGCCTACCTCGCTGTCGCCTACACTCTCACAGAACGTGCCTACC
TGTTCATTTTTCTTCGTCGCGACGCAAGCCGAAGTGCCTTTGCCGCAAAG
GCTGCGGGACTGGCTGCTGCCAGTGTTTTCACTGCCGTTCTGCTCTACGT
TATCACTGCCCTGCGCTATCTGCGTGCAACAAGGTCGCTACCGGAGGCTA
TTTCCGCCAGGAGCAAATCACGAAGAGTGTTGGAGGATCGTGCCGAGTCC
GCCTCGCGCTCCGTTGCGTCCTCGCATTCACATCATTCCGACCTTTCGCA
CCTCGGCCTCCGTCGCGTGCCCAGCAACTCTTTCTATGGCACTGCTGAGT
TTGTACAAGTCGAGAATGAAGACCAACTAGACCACTCTGCCTCCCTGTCC
GGACGCGACCGCGCATCTGTGCCTATCAACCTCGGTGGCGATGCGTCCGG
CCGCAGCTCGTGGTTCCGATCGTCCAGTGCGCGCTTGACCGCGTCTCTTT
CGGGCGGCAGTGCGGGCGACGGGCGCCCTGGTTTTGCCAGGACCAGTTCC
TTATCAAGTGTTTGGGACGACATGCAGCAGCCGCCTCCGCAAAAAGAAGA
TGAGGTGTTCTCCATGCCCGCGTGCTACAATGCGGCGAAGCAGGCCGACA
TGGTCAAGCTGCCCCACGTTCCGCGCGTAGACTCGGGCAAGCAAATACCG
AGGATCGCTTCGCGGCAGGCGTCTGGCAAGTTCTCAAGGACGAGCTCTTC
GAATAGCGTGCGCCCAGGCCCCGCTCCCCACCTGCCGTCCTCCGCGTTCA
CTGCATCCATGCTGGCGCGGAATAGCAGTGCTCACCGTGCGGACGGCAAA
AGAAGGAGGGGCGGCCACGTCGGACCCAGGTAA
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protein sequence of Gvermi12237.t1

>Gvermi12237.t1 ID=Gvermi12237.t1|Name=Gvermi12237.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=511bp
MNAVSDSDSVHSAAPNKHLHLFRAPLLFQPHEFTEASRSACLPLPVLLLL
RLFSAAALVGHLVFFSLRADFRFTEYLTWNYAALTLALLLALTCSLLDLI
HDHPDQQDNEPTLLTNLTEQNTPDDVERQSHAPAPFAPPKWLLLFTRFTV
PVYQLAVSATVFGAVVFWAAIYFNASIPLTYALLTQAVAAPAIAVLDFLL
SFRMNFRLIYIVPYLIYNAAYLAVAYTLTERAYLFIFLRRDASRSAFAAK
AAGLAAASVFTAVLLYVITALRYLRATRSLPEAISARSKSRRVLEDRAES
ASRSVASSHSHHSDLSHLGLRRVPSNSFYGTAEFVQVENEDQLDHSASLS
GRDRASVPINLGGDASGRSSWFRSSSARLTASLSGGSAGDGRPGFARTSS
LSSVWDDMQQPPPQKEDEVFSMPACYNAAKQADMVKLPHVPRVDSGKQIP
RIASRQASGKFSRTSSSNSVRPGPAPHLPSSAFTASMLARNSSAHRADGK
RRRGGHVGPR*
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mRNA from alignment at ScGOVlb_3404:3946629..3948161+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12237.t1 ID=Gvermi12237.t1|Name=Gvermi12237.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_3404:3946629..3948161+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGCCGTCTCGGATTCCGACTCCGTGCATTCGGCCGCGCCCAACAA
GCATCTGCACCTCTTTCGCGCCCCGCTTCTGTTCCAGCCGCACGAGTTTA
CCGAGGCCTCGCGTTCCGCCTGCCTCCCCTTGCCAGTGCTGCTGCTTCTG
CGTCTGTTTTCCGCCGCCGCCCTCGTCGGCCATCTCGTCTTCTTCTCGCT
GCGCGCCGACTTCCGCTTCACTGAGTACCTAACTTGGAATTACGCTGCCC
TCACTCTCGCTTTGCTGCTCGCCCTCACCTGTTCCCTCCTGGACCTCATC
CACGACCACCCTGATCAACAAGACAACGAACCAACACTACTCACTAACTT
AACCGAACAAAACACCCCCGATGACGTCGAGCGCCAGTCCCACGCCCCCG
CCCCGTTCGCGCCACCCAAATGGCTTCTCCTCTTCACTCGCTTCACCGTT
CCAGTGTACCAGCTCGCCGTATCTGCCACCGTCTTCGGCGCCGTCGTCTT
CTGGGCAGCCATCTACTTTAACGCTTCCATCCCACTCACGTACGCACTCC
TCACGCAGGCCGTCGCCGCCCCTGCCATCGCCGTCCTCGATTTCCTCCTT
TCCTTCCGAATGAATTTCCGTCTCATCTACATCGTCCCCTACCTCATATA
CAATGCAGCCTACCTCGCTGTCGCCTACACTCTCACAGAACGTGCCTACC
TGTTCATTTTTCTTCGTCGCGACGCAAGCCGAAGTGCCTTTGCCGCAAAG
GCTGCGGGACTGGCTGCTGCCAGTGTTTTCACTGCCGTTCTGCTCTACGT
TATCACTGCCCTGCGCTATCTGCGTGCAACAAGGTCGCTACCGGAGGCTA
TTTCCGCCAGGAGCAAATCACGAAGAGTGTTGGAGGATCGTGCCGAGTCC
GCCTCGCGCTCCGTTGCGTCCTCGCATTCACATCATTCCGACCTTTCGCA
CCTCGGCCTCCGTCGCGTGCCCAGCAACTCTTTCTATGGCACTGCTGAGT
TTGTACAAGTCGAGAATGAAGACCAACTAGACCACTCTGCCTCCCTGTCC
GGACGCGACCGCGCATCTGTGCCTATCAACCTCGGTGGCGATGCGTCCGG
CCGCAGCTCGTGGTTCCGATCGTCCAGTGCGCGCTTGACCGCGTCTCTTT
CGGGCGGCAGTGCGGGCGACGGGCGCCCTGGTTTTGCCAGGACCAGTTCC
TTATCAAGTGTTTGGGACGACATGCAGCAGCCGCCTCCGCAAAAAGAAGA
TGAGGTGTTCTCCATGCCCGCGTGCTACAATGCGGCGAAGCAGGCCGACA
TGGTCAAGCTGCCCCACGTTCCGCGCGTAGACTCGGGCAAGCAAATACCG
AGGATCGCTTCGCGGCAGGCGTCTGGCAAGTTCTCAAGGACGAGCTCTTC
GAATAGCGTGCGCCCAGGCCCCGCTCCCCACCTGCCGTCCTCCGCGTTCA
CTGCATCCATGCTGGCGCGGAATAGCAGTGCTCACCGTGCGGACGGCAAA
AGAAGGAGGGGCGGCCACGTCGGACCCAGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3946629..3948161+

>Gvermi12237.t1 ID=Gvermi12237.t1|Name=Gvermi12237.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1533bp|location=Sequence derived from alignment at ScGOVlb_3404:3946629..3948161+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGCCGTCTCGGATTCCGACTCCGTGCATTCGGCCGCGCCCAACAA
GCATCTGCACCTCTTTCGCGCCCCGCTTCTGTTCCAGCCGCACGAGTTTA
CCGAGGCCTCGCGTTCCGCCTGCCTCCCCTTGCCAGTGCTGCTGCTTCTG
CGTCTGTTTTCCGCCGCCGCCCTCGTCGGCCATCTCGTCTTCTTCTCGCT
GCGCGCCGACTTCCGCTTCACTGAGTACCTAACTTGGAATTACGCTGCCC
TCACTCTCGCTTTGCTGCTCGCCCTCACCTGTTCCCTCCTGGACCTCATC
CACGACCACCCTGATCAACAAGACAACGAACCAACACTACTCACTAACTT
AACCGAACAAAACACCCCCGATGACGTCGAGCGCCAGTCCCACGCCCCCG
CCCCGTTCGCGCCACCCAAATGGCTTCTCCTCTTCACTCGCTTCACCGTT
CCAGTGTACCAGCTCGCCGTATCTGCCACCGTCTTCGGCGCCGTCGTCTT
CTGGGCAGCCATCTACTTTAACGCTTCCATCCCACTCACGTACGCACTCC
TCACGCAGGCCGTCGCCGCCCCTGCCATCGCCGTCCTCGATTTCCTCCTT
TCCTTCCGAATGAATTTCCGTCTCATCTACATCGTCCCCTACCTCATATA
CAATGCAGCCTACCTCGCTGTCGCCTACACTCTCACAGAACGTGCCTACC
TGTTCATTTTTCTTCGTCGCGACGCAAGCCGAAGTGCCTTTGCCGCAAAG
GCTGCGGGACTGGCTGCTGCCAGTGTTTTCACTGCCGTTCTGCTCTACGT
TATCACTGCCCTGCGCTATCTGCGTGCAACAAGGTCGCTACCGGAGGCTA
TTTCCGCCAGGAGCAAATCACGAAGAGTGTTGGAGGATCGTGCCGAGTCC
GCCTCGCGCTCCGTTGCGTCCTCGCATTCACATCATTCCGACCTTTCGCA
CCTCGGCCTCCGTCGCGTGCCCAGCAACTCTTTCTATGGCACTGCTGAGT
TTGTACAAGTCGAGAATGAAGACCAACTAGACCACTCTGCCTCCCTGTCC
GGACGCGACCGCGCATCTGTGCCTATCAACCTCGGTGGCGATGCGTCCGG
CCGCAGCTCGTGGTTCCGATCGTCCAGTGCGCGCTTGACCGCGTCTCTTT
CGGGCGGCAGTGCGGGCGACGGGCGCCCTGGTTTTGCCAGGACCAGTTCC
TTATCAAGTGTTTGGGACGACATGCAGCAGCCGCCTCCGCAAAAAGAAGA
TGAGGTGTTCTCCATGCCCGCGTGCTACAATGCGGCGAAGCAGGCCGACA
TGGTCAAGCTGCCCCACGTTCCGCGCGTAGACTCGGGCAAGCAAATACCG
AGGATCGCTTCGCGGCAGGCGTCTGGCAAGTTCTCAAGGACGAGCTCTTC
GAATAGCGTGCGCCCAGGCCCCGCTCCCCACCTGCCGTCCTCCGCGTTCA
CTGCATCCATGCTGGCGCGGAATAGCAGTGCTCACCGTGCGGACGGCAAA
AGAAGGAGGGGCGGCCACGTCGGACCCAGGTAA
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