Gvermi12021.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12021.t1
Unique NameGvermi12021.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3022753..3023481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001746328.1
Preferred nameSRV2
PFAMsCAP_C,CAP_N
Max annot lvl33154|Opisthokonta
KEGG koko:K17261
GOsGO:0000902,GO:0000935,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005937,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007265,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008179,GO:0009653,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0019899,GO:0022411,GO:0023052,GO:0030029,GO:0030036,GO:0030042,GO:0030427,GO:0030428,GO:0030479,GO:0030832,GO:0030834,GO:0030836,GO:0030863,GO:0030864,GO:0031135,GO:0031137,GO:0031138,GO:0031279,GO:0032153,GO:0032155,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0033043,GO:0035556,GO:0035838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043243,GO:0043244,GO:0043332,GO:0043624,GO:0043900,GO:0043901,GO:0043933,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0045761,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051014,GO:0051128,GO:0051130,GO:0051261,GO:0051286,GO:0051339,GO:0051493,GO:0051495,GO:0051716,GO:0061645,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0099568,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901881,GO:1902903,GO:1902905,GO:2000241,GO:2000242
Evalue1.18e-37
EggNOG OGsCOG3268@1|root,KOG2675@1|root,KOG2675@2759|Eukaryota,KOG2733@2759|Eukaryota,38CGH@33154|Opisthokonta
DescriptionBelongs to the CAP family
COG categoryTZ
BRITEko00000,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12021Gvermi12021Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3022753..3023481 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12021.t1.start1Gvermi12021.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3022753..3022755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12021.t1.CDS1Gvermi12021.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3022753..3023481 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12021.t1.exon1Gvermi12021.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3022753..3023481 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12021.t1.stop1Gvermi12021.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3023479..3023481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12021.t1Gvermi12021.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3022753..3023481 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12021.t1 ID=Gvermi12021.t1|Name=Gvermi12021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=243bp
MSGPPAPPPPPPPPPPPAPSAGGGSEDMASALFAEINALGEKGARAGLKK
ATRGPVNEEVPTAHKPKPQPVAPAKATTAPEKKPVCELAGKKWTVEFQKD
NQELVIDVTSMKHTVYVYKCEKSVIQVKGKCNSISIDSCKKVDLVFEDAL
SQVEIVNSDSVRVQCTGNAPSINIDGCNSVTYFMSEASVEKAMVITSKSA
AINLIRPKPDDPDDIIETPIPEQFCTTFKDGEFVTEAVDHDD*
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spliced messenger RNA

>Gvermi12021.t1 ID=Gvermi12021.t1|Name=Gvermi12021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_3404:3022753..3023481+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGCccgcctgccccgccaccaccgccgccgccgccaccaccacc
agctccgtccgccgGTGGCGGTTCGGAGGACATGGCCAGTGCTCTGTTCG
CCGAGATTAATGCGCTTGGAGAAAAGGGCGCCCGCGCCGGTTTGAAGAAA
GCCACTCGTGGTCCGGTCAATGAGGAAGTTCCGACCGCACACAAGCCAAA
GCCGCAGCCAGTAGCTCCCGCGAAAGCCACCACCGCCCCGGAGAAGAAAC
CGGTGTGTGAGTTAGCCGGCAAGAAATGGACCGTCGAATTCCAGAAGGAC
AACCAAGAACTTGTCATCGATGTGACCAGCATGAAGCATACCGTCTATGT
ATACAAGTGTGAAAAGTCTGTCATCCAGGTCAAGGGCAAGTGCAACTCCA
TCTCCATCGACTCTTGCAAGAAGGTCGACCTTGTCTTCGAGGACGCCCTT
TCACAGGTCGAGATCGTTAACTCTGACTCTGTCCGAGTGCAGTGCACTGG
AAACGCCCCAAGCATCAACATTGATGGGTGCAATAGCGTCACCTACTTTA
TGTCAGAGGCTTCAGTTGAAAAAGCTATGGTTATCACATCGAAAAGTGCT
GCCATCAATCTCATTCGCCCCAAGCCTGATGACCCTGATGATATTATTGA
AACACCCATCCCGGAACAGTTCTGCACCACCTTCAAGGATGGTGAGTTTG
TCACTGAGGCTGTCGACCACGATGATTAA
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protein sequence of Gvermi12021.t1

>Gvermi12021.t1 ID=Gvermi12021.t1|Name=Gvermi12021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=243bp
MSGPPAPPPPPPPPPPPAPSAGGGSEDMASALFAEINALGEKGARAGLKK
ATRGPVNEEVPTAHKPKPQPVAPAKATTAPEKKPVCELAGKKWTVEFQKD
NQELVIDVTSMKHTVYVYKCEKSVIQVKGKCNSISIDSCKKVDLVFEDAL
SQVEIVNSDSVRVQCTGNAPSINIDGCNSVTYFMSEASVEKAMVITSKSA
AINLIRPKPDDPDDIIETPIPEQFCTTFKDGEFVTEAVDHDD*
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mRNA from alignment at ScGOVlb_3404:3022753..3023481+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12021.t1 ID=Gvermi12021.t1|Name=Gvermi12021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_3404:3022753..3023481+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGGCccgcctgccccgccaccaccgccgccgccgccaccaccacc
agctccgtccgccgGTGGCGGTTCGGAGGACATGGCCAGTGCTCTGTTCG
CCGAGATTAATGCGCTTGGAGAAAAGGGCGCCCGCGCCGGTTTGAAGAAA
GCCACTCGTGGTCCGGTCAATGAGGAAGTTCCGACCGCACACAAGCCAAA
GCCGCAGCCAGTAGCTCCCGCGAAAGCCACCACCGCCCCGGAGAAGAAAC
CGGTGTGTGAGTTAGCCGGCAAGAAATGGACCGTCGAATTCCAGAAGGAC
AACCAAGAACTTGTCATCGATGTGACCAGCATGAAGCATACCGTCTATGT
ATACAAGTGTGAAAAGTCTGTCATCCAGGTCAAGGGCAAGTGCAACTCCA
TCTCCATCGACTCTTGCAAGAAGGTCGACCTTGTCTTCGAGGACGCCCTT
TCACAGGTCGAGATCGTTAACTCTGACTCTGTCCGAGTGCAGTGCACTGG
AAACGCCCCAAGCATCAACATTGATGGGTGCAATAGCGTCACCTACTTTA
TGTCAGAGGCTTCAGTTGAAAAAGCTATGGTTATCACATCGAAAAGTGCT
GCCATCAATCTCATTCGCCCCAAGCCTGATGACCCTGATGATATTATTGA
AACACCCATCCCGGAACAGTTCTGCACCACCTTCAAGGATGGTGAGTTTG
TCACTGAGGCTGTCGACCACGATGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3022753..3023481+

>Gvermi12021.t1 ID=Gvermi12021.t1|Name=Gvermi12021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=729bp|location=Sequence derived from alignment at ScGOVlb_3404:3022753..3023481+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGGCccgcctgccccgccaccaccgccgccgccgccaccaccacc
agctccgtccgccgGTGGCGGTTCGGAGGACATGGCCAGTGCTCTGTTCG
CCGAGATTAATGCGCTTGGAGAAAAGGGCGCCCGCGCCGGTTTGAAGAAA
GCCACTCGTGGTCCGGTCAATGAGGAAGTTCCGACCGCACACAAGCCAAA
GCCGCAGCCAGTAGCTCCCGCGAAAGCCACCACCGCCCCGGAGAAGAAAC
CGGTGTGTGAGTTAGCCGGCAAGAAATGGACCGTCGAATTCCAGAAGGAC
AACCAAGAACTTGTCATCGATGTGACCAGCATGAAGCATACCGTCTATGT
ATACAAGTGTGAAAAGTCTGTCATCCAGGTCAAGGGCAAGTGCAACTCCA
TCTCCATCGACTCTTGCAAGAAGGTCGACCTTGTCTTCGAGGACGCCCTT
TCACAGGTCGAGATCGTTAACTCTGACTCTGTCCGAGTGCAGTGCACTGG
AAACGCCCCAAGCATCAACATTGATGGGTGCAATAGCGTCACCTACTTTA
TGTCAGAGGCTTCAGTTGAAAAAGCTATGGTTATCACATCGAAAAGTGCT
GCCATCAATCTCATTCGCCCCAAGCCTGATGACCCTGATGATATTATTGA
AACACCCATCCCGGAACAGTTCTGCACCACCTTCAAGGATGGTGAGTTTG
TCACTGAGGCTGTCGACCACGATGATTAA
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