Gvermi11695.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11695.t1
Unique NameGvermi11695.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1659635..1661059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11695Gvermi11695Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1659635..1661059 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11695.t1.stop1Gvermi11695.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1659635..1659637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11695.t1.CDS1Gvermi11695.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1659635..1661059 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11695.t1.exon1Gvermi11695.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1659635..1661059 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11695.t1.start1Gvermi11695.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1661057..1661059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11695.t1Gvermi11695.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1659635..1661059 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11695.t1 ID=Gvermi11695.t1|Name=Gvermi11695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=475bp
MVSFAHKWPEELDALPLLPNLPTLTPTAHVLRHLRTVLFGATQNGEHLTT
LVARPSEVAKTHSSSSAPDEDSAPQPTNLLIDGFAHNLSLNTLPIPVYAQ
LSEEQPILKYLPPGDTALTAFPIAAACRLERTDLQITFFTRTPDLHFYAF
HEQSLNETDIKLSENSLSILLRTEPSNAHGLLEQRSSTTKSVQPVRMRDT
TSIAQVAGAWYAGGNNEFIAAVTTLGRHLARRRNRRIALSSSPLAPIFAK
AIILRFDRSVQIRWMYLMVRSTTTRWASVCQGSGAAGVPVSFQLSEQASN
FSPMINHRNQREEKRFQTPRHTNSKRGTPVSRSLRKEAEYRSGIGGNTGR
RNISSASRIRRSPVESYKEESFMTEKMKQFKFADEPMGETEAAPSKLDFP
LSVRIRLRDGKEEDTDTSSEANVGIEATNTSLGSTVLGSNHDEDEATLTE
LCRKYLNVDFKEEVAREISAHLNK*
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spliced messenger RNA

>Gvermi11695.t1 ID=Gvermi11695.t1|Name=Gvermi11695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at ScGOVlb_3404:1659635..1661059- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATCATTTGCGCACAAATGGCCAGAAGAGCTCGATGCTCTTCCTCT
TCTTCCTAACTTACCTACTCTCACACCAACGGCTCATGTACTTCGTCACC
TTCGTACTGTGCTGTTCGGAGCTACGCAGAATGGTGAACATTTGACAACG
CTGGTCGCGAGACCCTCAGAAGTAGCAAAGACACATTCCTCGTCTTCAGC
TCCAGATGAAGATTCCGCTCCCCAACCAACAAATCTGTTGATAGATGGAT
TCGCCCATAATCTTTCGCTCAATACCTTACCTATTCCTGTCTACGCCCAA
CTCTCGGAAGAGCAGCCGATTCTGAAATATCTTCCACCCGGAGATACGGC
TCTGACTGCTTTTCCAATTGCTGCTGCATGTCGCCTAGAACGAACCGATC
TTCAAATAACATTTTTTACTCGAACACCGGATCTCCACTTCTATGCCTTT
CACGAGCAGTCTCTGAATGAAACAGACATAAAACTGTCTGAAAATAGTCT
CTCTATCCTTTTACGAACGGAGCCTAGTAACGCCCATGGACTATTGGAGC
AACGAAGTTCAACAACCAAGTCTGTGCAGCCCGTTCGAATGCGGGACACC
ACGAGCATAGCACAAGTAGCAGGAGCCTGGTACGCTGGAGGTAATAACGA
GTTCATAGCAGCTGTGACAACGCTTGGACGCCACCTCGCTCGACGAAGGA
ATCGCCGCATCGCGCTGTCTTCATCACCTTTAGCACCGATCTTTGCAAAA
GCCATAATTCTTCGATTTGACAGATCAGTTCAGATTCGATGGATGTACTT
AATGGTGCGATCAACAACCACAAGGTGGGCTTCTGTTTGTCAAGGAAGTG
GGGCTGCTGGTGTTCCGGTATCTTTTCAGCTCTCGGAGCAAGCCTCTAAT
TTTTCTCCAATGATAAATCATCGCAATCAACGTGAGGAAAAACGTTTCCA
GACGCCACGCCATACAAACTCCAAAAGAGGTACACCAGTGTCAAGAAGCT
TGAGAAAAGAAGCCGAATACAGAAGTGGCATCGGGGGAAACACCGGGCGG
AGGAATATCTCTAGTGCGAGTAGAATTCGAAGGAGCCCCGTTGAAAGTTA
CAAAGAAGAGTCATTTATGACTGAGAAAATGAAGCAGTTTAAGTTTGCGG
ATGAACCAATGGGAGAAACTGAAGCGGCTCCATCTAAACTAGATTTTCCA
CTCTCTGTTCGGATACGACTCAGAGATGGAAAGGAAGAAGATACCGACAC
TTCAAGTGAAGCCAACGTTGGAATCGAAGCAACAAACACGAGCCTCGGAA
GTACTGTTCTGGGCAGCAATCACGACGAAGATGAGGCGACTCTCACCGAA
CTTTGTCGCAAGTATCTAAATGTGGATTTTAAAGAGGAAGTTGCGAGAGA
AATTTCTGCTCATTTGAACAAATAA
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protein sequence of Gvermi11695.t1

>Gvermi11695.t1 ID=Gvermi11695.t1|Name=Gvermi11695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=475bp
MVSFAHKWPEELDALPLLPNLPTLTPTAHVLRHLRTVLFGATQNGEHLTT
LVARPSEVAKTHSSSSAPDEDSAPQPTNLLIDGFAHNLSLNTLPIPVYAQ
LSEEQPILKYLPPGDTALTAFPIAAACRLERTDLQITFFTRTPDLHFYAF
HEQSLNETDIKLSENSLSILLRTEPSNAHGLLEQRSSTTKSVQPVRMRDT
TSIAQVAGAWYAGGNNEFIAAVTTLGRHLARRRNRRIALSSSPLAPIFAK
AIILRFDRSVQIRWMYLMVRSTTTRWASVCQGSGAAGVPVSFQLSEQASN
FSPMINHRNQREEKRFQTPRHTNSKRGTPVSRSLRKEAEYRSGIGGNTGR
RNISSASRIRRSPVESYKEESFMTEKMKQFKFADEPMGETEAAPSKLDFP
LSVRIRLRDGKEEDTDTSSEANVGIEATNTSLGSTVLGSNHDEDEATLTE
LCRKYLNVDFKEEVAREISAHLNK*
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mRNA from alignment at ScGOVlb_3404:1659635..1661059-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11695.t1 ID=Gvermi11695.t1|Name=Gvermi11695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at ScGOVlb_3404:1659635..1661059- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTATCATTTGCGCACAAATGGCCAGAAGAGCTCGATGCTCTTCCTCT
TCTTCCTAACTTACCTACTCTCACACCAACGGCTCATGTACTTCGTCACC
TTCGTACTGTGCTGTTCGGAGCTACGCAGAATGGTGAACATTTGACAACG
CTGGTCGCGAGACCCTCAGAAGTAGCAAAGACACATTCCTCGTCTTCAGC
TCCAGATGAAGATTCCGCTCCCCAACCAACAAATCTGTTGATAGATGGAT
TCGCCCATAATCTTTCGCTCAATACCTTACCTATTCCTGTCTACGCCCAA
CTCTCGGAAGAGCAGCCGATTCTGAAATATCTTCCACCCGGAGATACGGC
TCTGACTGCTTTTCCAATTGCTGCTGCATGTCGCCTAGAACGAACCGATC
TTCAAATAACATTTTTTACTCGAACACCGGATCTCCACTTCTATGCCTTT
CACGAGCAGTCTCTGAATGAAACAGACATAAAACTGTCTGAAAATAGTCT
CTCTATCCTTTTACGAACGGAGCCTAGTAACGCCCATGGACTATTGGAGC
AACGAAGTTCAACAACCAAGTCTGTGCAGCCCGTTCGAATGCGGGACACC
ACGAGCATAGCACAAGTAGCAGGAGCCTGGTACGCTGGAGGTAATAACGA
GTTCATAGCAGCTGTGACAACGCTTGGACGCCACCTCGCTCGACGAAGGA
ATCGCCGCATCGCGCTGTCTTCATCACCTTTAGCACCGATCTTTGCAAAA
GCCATAATTCTTCGATTTGACAGATCAGTTCAGATTCGATGGATGTACTT
AATGGTGCGATCAACAACCACAAGGTGGGCTTCTGTTTGTCAAGGAAGTG
GGGCTGCTGGTGTTCCGGTATCTTTTCAGCTCTCGGAGCAAGCCTCTAAT
TTTTCTCCAATGATAAATCATCGCAATCAACGTGAGGAAAAACGTTTCCA
GACGCCACGCCATACAAACTCCAAAAGAGGTACACCAGTGTCAAGAAGCT
TGAGAAAAGAAGCCGAATACAGAAGTGGCATCGGGGGAAACACCGGGCGG
AGGAATATCTCTAGTGCGAGTAGAATTCGAAGGAGCCCCGTTGAAAGTTA
CAAAGAAGAGTCATTTATGACTGAGAAAATGAAGCAGTTTAAGTTTGCGG
ATGAACCAATGGGAGAAACTGAAGCGGCTCCATCTAAACTAGATTTTCCA
CTCTCTGTTCGGATACGACTCAGAGATGGAAAGGAAGAAGATACCGACAC
TTCAAGTGAAGCCAACGTTGGAATCGAAGCAACAAACACGAGCCTCGGAA
GTACTGTTCTGGGCAGCAATCACGACGAAGATGAGGCGACTCTCACCGAA
CTTTGTCGCAAGTATCTAAATGTGGATTTTAAAGAGGAAGTTGCGAGAGA
AATTTCTGCTCATTTGAACAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1659635..1661059-

>Gvermi11695.t1 ID=Gvermi11695.t1|Name=Gvermi11695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1425bp|location=Sequence derived from alignment at ScGOVlb_3404:1659635..1661059- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTATCATTTGCGCACAAATGGCCAGAAGAGCTCGATGCTCTTCCTCT
TCTTCCTAACTTACCTACTCTCACACCAACGGCTCATGTACTTCGTCACC
TTCGTACTGTGCTGTTCGGAGCTACGCAGAATGGTGAACATTTGACAACG
CTGGTCGCGAGACCCTCAGAAGTAGCAAAGACACATTCCTCGTCTTCAGC
TCCAGATGAAGATTCCGCTCCCCAACCAACAAATCTGTTGATAGATGGAT
TCGCCCATAATCTTTCGCTCAATACCTTACCTATTCCTGTCTACGCCCAA
CTCTCGGAAGAGCAGCCGATTCTGAAATATCTTCCACCCGGAGATACGGC
TCTGACTGCTTTTCCAATTGCTGCTGCATGTCGCCTAGAACGAACCGATC
TTCAAATAACATTTTTTACTCGAACACCGGATCTCCACTTCTATGCCTTT
CACGAGCAGTCTCTGAATGAAACAGACATAAAACTGTCTGAAAATAGTCT
CTCTATCCTTTTACGAACGGAGCCTAGTAACGCCCATGGACTATTGGAGC
AACGAAGTTCAACAACCAAGTCTGTGCAGCCCGTTCGAATGCGGGACACC
ACGAGCATAGCACAAGTAGCAGGAGCCTGGTACGCTGGAGGTAATAACGA
GTTCATAGCAGCTGTGACAACGCTTGGACGCCACCTCGCTCGACGAAGGA
ATCGCCGCATCGCGCTGTCTTCATCACCTTTAGCACCGATCTTTGCAAAA
GCCATAATTCTTCGATTTGACAGATCAGTTCAGATTCGATGGATGTACTT
AATGGTGCGATCAACAACCACAAGGTGGGCTTCTGTTTGTCAAGGAAGTG
GGGCTGCTGGTGTTCCGGTATCTTTTCAGCTCTCGGAGCAAGCCTCTAAT
TTTTCTCCAATGATAAATCATCGCAATCAACGTGAGGAAAAACGTTTCCA
GACGCCACGCCATACAAACTCCAAAAGAGGTACACCAGTGTCAAGAAGCT
TGAGAAAAGAAGCCGAATACAGAAGTGGCATCGGGGGAAACACCGGGCGG
AGGAATATCTCTAGTGCGAGTAGAATTCGAAGGAGCCCCGTTGAAAGTTA
CAAAGAAGAGTCATTTATGACTGAGAAAATGAAGCAGTTTAAGTTTGCGG
ATGAACCAATGGGAGAAACTGAAGCGGCTCCATCTAAACTAGATTTTCCA
CTCTCTGTTCGGATACGACTCAGAGATGGAAAGGAAGAAGATACCGACAC
TTCAAGTGAAGCCAACGTTGGAATCGAAGCAACAAACACGAGCCTCGGAA
GTACTGTTCTGGGCAGCAATCACGACGAAGATGAGGCGACTCTCACCGAA
CTTTGTCGCAAGTATCTAAATGTGGATTTTAAAGAGGAAGTTGCGAGAGA
AATTTCTGCTCATTTGAACAAATAA
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