Gvermi12484.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12484.t1
Unique NameGvermi12484.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5282200..5282871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391625.PPSIR1_15905
Max annot lvl1224|Proteobacteria
Evalue4.93e-68
EggNOG OGs2A1KC@1|root,30PUB@2|Bacteria,1RGDX@1224|Proteobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12484Gvermi12484Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5282200..5282871 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12484.t1.start1Gvermi12484.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5282200..5282202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12484.t1.CDS1Gvermi12484.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5282200..5282871 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12484.t1.exon1Gvermi12484.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5282200..5282871 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12484.t1.stop1Gvermi12484.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5282869..5282871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12484.t1Gvermi12484.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5282200..5282871 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12484.t1 ID=Gvermi12484.t1|Name=Gvermi12484.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=224bp
MSFTLHQCSYVPGTSEYKYGHNSIPTLSTENAPEDANFARCAMLFGDANY
RLYCFKGSSRDTIYQFVWNGSAYEWGYGDSIAEMNITGLPDDACLSKFAM
LHDGEAYRFYVKKLGAPVLYQCAWNGSSYEYGHNSIPNIHITDFPNDADL
GRWDMLHDGSNYRFYCMSFSNPNLIYQGAFSDGNYAFGAESIPKLTVTDC
PESVSYSDICMLHDGDAYRMYIV*
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spliced messenger RNA

>Gvermi12484.t1 ID=Gvermi12484.t1|Name=Gvermi12484.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=672bp|location=Sequence derived from alignment at ScGOVlb_3404:5282200..5282871+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTCACACTTCACCAGTGCTCCTACGTACCCGGCACAAGCGAATA
CAAGTATGGCCATAACTCGATCCCCACTCTCTCTACTGAAAATGCTCCAG
AGGATGCCAACTTTGCACGATGCGCCATGTTATTTGGAGATGCCAACTAC
CGCTTGTATTGCTTCAAGGGCAGCTCCCGCGACACTATTTACCAGTTTGT
CTGGAACGGAAGCGCATACGAGTGGGGCTACGGCGATTCAATCGCCGAGA
TGAATATCACTGGTCTGCCCGATGACGCCTGTCTCAGCAAGTTTGCCATG
CTTCATGATGGTGAAGCCTATCGTTTCTACGTCAAGAAACTAGGTGCACC
CGTCCTGTATCAGTGTGCGTGGAACGGATCAAGCTACGAGTACGGTCACA
ACTCTATTCCGAACATCCACATCACAGATTTTCCGAATGACGCCGATCTA
GGCCGTTGGGACATGCTTCACGATGGGAGCAACTATCGATTCTATTGCAT
GTCGTTTTCAAACCCAAACCTTATTTACCAAGGAGCCTTCTCTGATGGAA
ACTATGCCTTCGGTGCCGAATCCATTCCGAAACTTACTGTGACTGACTGT
CCGGAATCTGTTTCCTACAGCGACATTTGTATGCTGCATGATGGAGACGC
CTACCGCATGTACATCGTTTAA
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protein sequence of Gvermi12484.t1

>Gvermi12484.t1 ID=Gvermi12484.t1|Name=Gvermi12484.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=224bp
MSFTLHQCSYVPGTSEYKYGHNSIPTLSTENAPEDANFARCAMLFGDANY
RLYCFKGSSRDTIYQFVWNGSAYEWGYGDSIAEMNITGLPDDACLSKFAM
LHDGEAYRFYVKKLGAPVLYQCAWNGSSYEYGHNSIPNIHITDFPNDADL
GRWDMLHDGSNYRFYCMSFSNPNLIYQGAFSDGNYAFGAESIPKLTVTDC
PESVSYSDICMLHDGDAYRMYIV*
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mRNA from alignment at ScGOVlb_3404:5282200..5282871+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12484.t1 ID=Gvermi12484.t1|Name=Gvermi12484.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=672bp|location=Sequence derived from alignment at ScGOVlb_3404:5282200..5282871+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTTCACACTTCACCAGTGCTCCTACGTACCCGGCACAAGCGAATA
CAAGTATGGCCATAACTCGATCCCCACTCTCTCTACTGAAAATGCTCCAG
AGGATGCCAACTTTGCACGATGCGCCATGTTATTTGGAGATGCCAACTAC
CGCTTGTATTGCTTCAAGGGCAGCTCCCGCGACACTATTTACCAGTTTGT
CTGGAACGGAAGCGCATACGAGTGGGGCTACGGCGATTCAATCGCCGAGA
TGAATATCACTGGTCTGCCCGATGACGCCTGTCTCAGCAAGTTTGCCATG
CTTCATGATGGTGAAGCCTATCGTTTCTACGTCAAGAAACTAGGTGCACC
CGTCCTGTATCAGTGTGCGTGGAACGGATCAAGCTACGAGTACGGTCACA
ACTCTATTCCGAACATCCACATCACAGATTTTCCGAATGACGCCGATCTA
GGCCGTTGGGACATGCTTCACGATGGGAGCAACTATCGATTCTATTGCAT
GTCGTTTTCAAACCCAAACCTTATTTACCAAGGAGCCTTCTCTGATGGAA
ACTATGCCTTCGGTGCCGAATCCATTCCGAAACTTACTGTGACTGACTGT
CCGGAATCTGTTTCCTACAGCGACATTTGTATGCTGCATGATGGAGACGC
CTACCGCATGTACATCGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5282200..5282871+

>Gvermi12484.t1 ID=Gvermi12484.t1|Name=Gvermi12484.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=672bp|location=Sequence derived from alignment at ScGOVlb_3404:5282200..5282871+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTTCACACTTCACCAGTGCTCCTACGTACCCGGCACAAGCGAATA
CAAGTATGGCCATAACTCGATCCCCACTCTCTCTACTGAAAATGCTCCAG
AGGATGCCAACTTTGCACGATGCGCCATGTTATTTGGAGATGCCAACTAC
CGCTTGTATTGCTTCAAGGGCAGCTCCCGCGACACTATTTACCAGTTTGT
CTGGAACGGAAGCGCATACGAGTGGGGCTACGGCGATTCAATCGCCGAGA
TGAATATCACTGGTCTGCCCGATGACGCCTGTCTCAGCAAGTTTGCCATG
CTTCATGATGGTGAAGCCTATCGTTTCTACGTCAAGAAACTAGGTGCACC
CGTCCTGTATCAGTGTGCGTGGAACGGATCAAGCTACGAGTACGGTCACA
ACTCTATTCCGAACATCCACATCACAGATTTTCCGAATGACGCCGATCTA
GGCCGTTGGGACATGCTTCACGATGGGAGCAACTATCGATTCTATTGCAT
GTCGTTTTCAAACCCAAACCTTATTTACCAAGGAGCCTTCTCTGATGGAA
ACTATGCCTTCGGTGCCGAATCCATTCCGAAACTTACTGTGACTGACTGT
CCGGAATCTGTTTCCTACAGCGACATTTGTATGCTGCATGATGGAGACGC
CTACCGCATGTACATCGTTTAA
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