Gvermi12308.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12308.t1
Unique NameGvermi12308.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4155678..4156121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog337075.U4LKU4
PFAMsPeptidase_S24
Max annot lvl4751|Fungi
KEGG koko:K09648
KEGG Pathwayko03060,map03060
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006626,GO:0006627,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008237,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0017171,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034982,GO:0042720,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0065003,GO:0070011,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564
Evalue4.12e-11
EggNOG OGsCOG0681@1|root,KOG1568@2759|Eukaryota,3A65R@33154|Opisthokonta,3P57W@4751|Fungi,3QWUT@4890|Ascomycota
Descriptionmitochondrial inner membrane protease subunit
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12308Gvermi12308Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4155678..4156121 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12308.t1.start1Gvermi12308.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4155678..4155680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12308.t1.CDS1Gvermi12308.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4155678..4156121 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12308.t1.exon1Gvermi12308.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4155678..4156121 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12308.t1.stop1Gvermi12308.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4156119..4156121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12308.t1Gvermi12308.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4155678..4156121 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12308.t1 ID=Gvermi12308.t1|Name=Gvermi12308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=148bp
MITRILSFLSYVPVAIVFHDNVATVHVETTHDMEPNIPLNTPCLITRNAK
PSNYRRGEVLAIMAPDGHLTLRRVVALPGDFVRQASSTTIVPHGYVWVER
DQNQTHHELPHGKTPIALVTGRVVASLGGNAAIVPSKKAITPSLPFN*
back to top

spliced messenger RNA

>Gvermi12308.t1 ID=Gvermi12308.t1|Name=Gvermi12308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp|location=Sequence derived from alignment at ScGOVlb_3404:4155678..4156121+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAACTCGAATTCTTTCATTTCTTTCGTATGTTCCTGTGGCAATTGT
ATTCCATGACAATGTGGCCACCGTGCACGTCGAAACAACTCATGACATGG
AACCGAACATACCCCTCAATACACCCTGCCTTATAACCCGGAATGCGAAA
CCCAGTAATTACCGTCGTGGGGAAGTTCTCGCGATTATGGCACCAGATGG
TCATTTGACACTGCGTCGCGTGGTTGCGCTTCCTGGTGACTTTGTTCGTC
AAGCTTCATCGACCACAATTGTTCCTCATGGCTACGTATGGGTTGAACGC
GATCAGAATCAAACTCATCACGAGTTACCGCACGGAAAGACTCCCATTGC
ACTTGTTACTGGTAGAGTGGTGGCCTCACTTGGAGGGAATGCCGCTATTG
TCCCTTCAAAAAAAGCTATAACGCCTTCTTTACCGTTCAATTGA
back to top

protein sequence of Gvermi12308.t1

>Gvermi12308.t1 ID=Gvermi12308.t1|Name=Gvermi12308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=148bp
MITRILSFLSYVPVAIVFHDNVATVHVETTHDMEPNIPLNTPCLITRNAK
PSNYRRGEVLAIMAPDGHLTLRRVVALPGDFVRQASSTTIVPHGYVWVER
DQNQTHHELPHGKTPIALVTGRVVASLGGNAAIVPSKKAITPSLPFN*
back to top

mRNA from alignment at ScGOVlb_3404:4155678..4156121+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12308.t1 ID=Gvermi12308.t1|Name=Gvermi12308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp|location=Sequence derived from alignment at ScGOVlb_3404:4155678..4156121+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATAACTCGAATTCTTTCATTTCTTTCGTATGTTCCTGTGGCAATTGT
ATTCCATGACAATGTGGCCACCGTGCACGTCGAAACAACTCATGACATGG
AACCGAACATACCCCTCAATACACCCTGCCTTATAACCCGGAATGCGAAA
CCCAGTAATTACCGTCGTGGGGAAGTTCTCGCGATTATGGCACCAGATGG
TCATTTGACACTGCGTCGCGTGGTTGCGCTTCCTGGTGACTTTGTTCGTC
AAGCTTCATCGACCACAATTGTTCCTCATGGCTACGTATGGGTTGAACGC
GATCAGAATCAAACTCATCACGAGTTACCGCACGGAAAGACTCCCATTGC
ACTTGTTACTGGTAGAGTGGTGGCCTCACTTGGAGGGAATGCCGCTATTG
TCCCTTCAAAAAAAGCTATAACGCCTTCTTTACCGTTCAATTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4155678..4156121+

>Gvermi12308.t1 ID=Gvermi12308.t1|Name=Gvermi12308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=444bp|location=Sequence derived from alignment at ScGOVlb_3404:4155678..4156121+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATAACTCGAATTCTTTCATTTCTTTCGTATGTTCCTGTGGCAATTGT
ATTCCATGACAATGTGGCCACCGTGCACGTCGAAACAACTCATGACATGG
AACCGAACATACCCCTCAATACACCCTGCCTTATAACCCGGAATGCGAAA
CCCAGTAATTACCGTCGTGGGGAAGTTCTCGCGATTATGGCACCAGATGG
TCATTTGACACTGCGTCGCGTGGTTGCGCTTCCTGGTGACTTTGTTCGTC
AAGCTTCATCGACCACAATTGTTCCTCATGGCTACGTATGGGTTGAACGC
GATCAGAATCAAACTCATCACGAGTTACCGCACGGAAAGACTCCCATTGC
ACTTGTTACTGGTAGAGTGGTGGCCTCACTTGGAGGGAATGCCGCTATTG
TCCCTTCAAAAAAAGCTATAACGCCTTCTTTACCGTTCAATTGA
back to top