Gvermi12102.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12102.t2
Unique Name	Gvermi12102.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	673

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3416456..3418474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12102	Gvermi12102	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3416456..3418474 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12102.t2.start1	Gvermi12102.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3416456..3416458 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12102.t2.CDS1	Gvermi12102.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3416456..3418474 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12102.t2.exon1	Gvermi12102.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3416456..3418474 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12102.t2.stop1	Gvermi12102.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3418472..3418474 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12102.t2	Gvermi12102.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3416456..3418474 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3416456..3418474+
coding sequence from alignment at ScGOVlb_3404:3416456..3418474+

mRNA sequence

>Gvermi12102.t2 ID=Gvermi12102.t2|Name=Gvermi12102.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=673bp
MSGKNAANGAVPGSDLDRYGPSSSLPLLVRMPDGEDHQIDIPSNASVKDL
KTSIANLPWQPSGTDPQQQSLELEFGGETLNENQTLSHYHIPEVYDHADG
FLKTISDSGYLDPDKKVEALDKACAVVRGISRGEKDMERLIGAAFDDAND
DTPASPSAQPSLRAMKRSRLSRIPSLNLGALNYLGPEGKPLTKLFSPSAP
PTPRQLIRKLSIMRPDLYDSEAAVKATSSLSLRNIANLANNIPARPSESP
NIGSGELKRGNTWFHEIMNSMNTSLRDPRKRAVHHETQEEVEGDSEGENG
LGTDEGNVSGDRKDLPFEGQTKIRLRSTQNKMDSSSADVDENETTTAPIN
DMNVINETLIKPEGDTLTAAKSSTKDQDGSKPETDGGSSTTSVSKKDPEE
AEMKKSTRNQIDVSNTSIQTPPKQVTTSSESHSIVPSRPIVHQDKQVIGL
TPERQASGEEVRQPRKRGRKRKNPHLTEEERKAQRQAQNRESAKLSRIRR
KHLTMEYERRVNTLEGENENLRDTISGLEDRLQMLQNLLTITVQRRSIPQ
VHPSLISSATAAIGQGPQTRLNPTINPHIPMAGQPGAVSQAALVSRALNA
QALMGNPNIMARTGAMPHTGMMHAQNVLSTQRPVNANDSLAGHTQALSAS
RPLGSKAPSHSNPLTNFPYKNF*

spliced messenger RNA

>Gvermi12102.t2 ID=Gvermi12102.t2|Name=Gvermi12102.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2019bp|location=Sequence derived from alignment at ScGOVlb_3404:3416456..3418474+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGGCAAGAACGCAGCAAACGGTGCTGTGCCTGGGTCTGACCTCGA
TCGCTACGGTCCTAGTTCATCTCTTCCTCTCCTCGTGCGCATGCCAGATG
GTGAGGACCACCAAATCGATATACCCTCAAATGCTTCTGTCAAAGACCTC
AAGACTTCCATTGCTAACCTGCCATGGCAACCCTCCGGCACCGACCCGCA
GCAACAATCACTTGAGCTCGAATTCGGAGGGGAAACATTGAATGAAAACC
AAACCTTGAGCCACTATCATATCCCAGAGGTATATGACCATGCGGATGGC
TTCCTGAAAACTATTTCGGACAGCGGCTACCTAGATCCTGATAAGAAGGT
CGAGGCTCTGGATAAGGCATGTGCCGTTGTACGAGGCATTTCAAGGGGAG
AAAAGGACATGGAGCGTCTCATTGGCGCTGCATTTGATGACGCCAATGAC
GATACACCTGCTTCACCGTCTGCTCAACCTTCGCTTCGCGCCATGAAGCG
TTCTCGTCTAAGTCGCATACCTTCCTTGAACTTGGGAGCACTGAACTACC
TTGGACCCGAAGGGAAGCCCTTGACAAAACTTTTCTCTCCGTCAGCGCCA
CCCACGCCTCGGCAACTCATTAGAAAGCTTAGTATCATGCGACCGGACCT
TTACGATTCAGAAGCTGCGGTAAAAGCTACAAGCTCCTTGTCACTGAGGA
ATATCGCAAACTTGGCAAATAACATACCTGCTCGCCCAAGTGAATCTCCG
AATATCGGGAGTGGAGAACTTAAGAGAGGGAACACATGGTTTCACGAAAT
TATGAATTCCATGAACACCTCCCTGCGAGATCCGAGAAAACGTGCAGTCC
ATCATGAGACCCAAGAAGAAGTAGAGGGTGATAGTGAAGGTGAAAATGGC
CTGGGAACGGACGAAGGAAACGTATCTGGTGACCGGAAGGATCTACCTTT
CGAGGGGCAAACAAAAATTCGGCTTCGATCCACCCAAAACAAAATGGACT
CGTCCTCAGCTGATGTAGATGAAAACGAAACAACGACAGCCCCGATAAAC
GATATGAACGTCATCAACGAAACGTTAATCAAGCCAGAAGGGGATACATT
GACTGCTGCGAAATCGTCGACAAAGGATCAAGATGGATCTAAGCCAGAAA
CAGATGGTGGCTCGTCGACTACATCTGTATCAAAGAAGGATCCGGAAGAG
GCAGAAATGAAGAAAAGCACTCGGAACCAGATAGATGTATCAAATACGAG
CATCCAAACGCCTCCGAAACAGGTAACAACGTCGAGCGAATCGCACTCTA
TAGTGCCATCTCGACCGATAGTGCATCAAGACAAACAAGTTATTGGCTTG
ACTCCGGAACGCCAAGCTAGCGGGGAGGAGGTGAGACAGCCGAGGAAACG
AGGAAGGAAACGAAAAAACCCGCATCTCACGGAAGAGGAAAGGAAGGCAC
AAAGGCAAGCGCAGAATAGAGAAAGTGCCAAGCTCTCTCGAATCCGTCGG
AAGCACTTGACTATGGAATACGAAAGGAGAGTGAACACTCTAGAAGGCGA
GAACGAAAATCTACGAGACACCATCAGTGGACTGGAGGATCGTCTTCAAA
TGCTACAGAATTTGCTTACCATCACTGTGCAACGGAGAAGCATCCCGCAA
GTTCACCCTTCATTAATATCATCGGCCACTGCAGCCATTGGCCAAGGGCC
ACAAACCCGACTCAATCCAACAATAAACCCTCATATACCCATGGCAGGCC
AGCCGGGCGCTGTCTCACAAGCTGCGCTTGTTTCACGGGCCCTCAACGCA
CAGGCTTTGATGGGAAACCCGAACATAATGGCTCGAACTGGTGCAATGCC
GCACACGGGTATGATGCATGCACAAAACGTGTTGAGCACGCAGCGCCCCG
TCAACGCTAACGACTCTCTTGCAGGACACACTCAAGCACTTTCAGCGTCA
AGGCCTCTAGGATCCAAGGCTCCGTCGCATTCAAATCCGTTGACAAACTT
TCCGTACAAAAACTTTTGA

protein sequence of Gvermi12102.t2

>Gvermi12102.t2 ID=Gvermi12102.t2|Name=Gvermi12102.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=673bp
MSGKNAANGAVPGSDLDRYGPSSSLPLLVRMPDGEDHQIDIPSNASVKDL
KTSIANLPWQPSGTDPQQQSLELEFGGETLNENQTLSHYHIPEVYDHADG
FLKTISDSGYLDPDKKVEALDKACAVVRGISRGEKDMERLIGAAFDDAND
DTPASPSAQPSLRAMKRSRLSRIPSLNLGALNYLGPEGKPLTKLFSPSAP
PTPRQLIRKLSIMRPDLYDSEAAVKATSSLSLRNIANLANNIPARPSESP
NIGSGELKRGNTWFHEIMNSMNTSLRDPRKRAVHHETQEEVEGDSEGENG
LGTDEGNVSGDRKDLPFEGQTKIRLRSTQNKMDSSSADVDENETTTAPIN
DMNVINETLIKPEGDTLTAAKSSTKDQDGSKPETDGGSSTTSVSKKDPEE
AEMKKSTRNQIDVSNTSIQTPPKQVTTSSESHSIVPSRPIVHQDKQVIGL
TPERQASGEEVRQPRKRGRKRKNPHLTEEERKAQRQAQNRESAKLSRIRR
KHLTMEYERRVNTLEGENENLRDTISGLEDRLQMLQNLLTITVQRRSIPQ
VHPSLISSATAAIGQGPQTRLNPTINPHIPMAGQPGAVSQAALVSRALNA
QALMGNPNIMARTGAMPHTGMMHAQNVLSTQRPVNANDSLAGHTQALSAS
RPLGSKAPSHSNPLTNFPYKNF*

mRNA from alignment at ScGOVlb_3404:3416456..3418474+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12102.t2 ID=Gvermi12102.t2|Name=Gvermi12102.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2019bp|location=Sequence derived from alignment at ScGOVlb_3404:3416456..3418474+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGGCAAGAACGCAGCAAACGGTGCTGTGCCTGGGTCTGACCTCGA
TCGCTACGGTCCTAGTTCATCTCTTCCTCTCCTCGTGCGCATGCCAGATG
GTGAGGACCACCAAATCGATATACCCTCAAATGCTTCTGTCAAAGACCTC
AAGACTTCCATTGCTAACCTGCCATGGCAACCCTCCGGCACCGACCCGCA
GCAACAATCACTTGAGCTCGAATTCGGAGGGGAAACATTGAATGAAAACC
AAACCTTGAGCCACTATCATATCCCAGAGGTATATGACCATGCGGATGGC
TTCCTGAAAACTATTTCGGACAGCGGCTACCTAGATCCTGATAAGAAGGT
CGAGGCTCTGGATAAGGCATGTGCCGTTGTACGAGGCATTTCAAGGGGAG
AAAAGGACATGGAGCGTCTCATTGGCGCTGCATTTGATGACGCCAATGAC
GATACACCTGCTTCACCGTCTGCTCAACCTTCGCTTCGCGCCATGAAGCG
TTCTCGTCTAAGTCGCATACCTTCCTTGAACTTGGGAGCACTGAACTACC
TTGGACCCGAAGGGAAGCCCTTGACAAAACTTTTCTCTCCGTCAGCGCCA
CCCACGCCTCGGCAACTCATTAGAAAGCTTAGTATCATGCGACCGGACCT
TTACGATTCAGAAGCTGCGGTAAAAGCTACAAGCTCCTTGTCACTGAGGA
ATATCGCAAACTTGGCAAATAACATACCTGCTCGCCCAAGTGAATCTCCG
AATATCGGGAGTGGAGAACTTAAGAGAGGGAACACATGGTTTCACGAAAT
TATGAATTCCATGAACACCTCCCTGCGAGATCCGAGAAAACGTGCAGTCC
ATCATGAGACCCAAGAAGAAGTAGAGGGTGATAGTGAAGGTGAAAATGGC
CTGGGAACGGACGAAGGAAACGTATCTGGTGACCGGAAGGATCTACCTTT
CGAGGGGCAAACAAAAATTCGGCTTCGATCCACCCAAAACAAAATGGACT
CGTCCTCAGCTGATGTAGATGAAAACGAAACAACGACAGCCCCGATAAAC
GATATGAACGTCATCAACGAAACGTTAATCAAGCCAGAAGGGGATACATT
GACTGCTGCGAAATCGTCGACAAAGGATCAAGATGGATCTAAGCCAGAAA
CAGATGGTGGCTCGTCGACTACATCTGTATCAAAGAAGGATCCGGAAGAG
GCAGAAATGAAGAAAAGCACTCGGAACCAGATAGATGTATCAAATACGAG
CATCCAAACGCCTCCGAAACAGGTAACAACGTCGAGCGAATCGCACTCTA
TAGTGCCATCTCGACCGATAGTGCATCAAGACAAACAAGTTATTGGCTTG
ACTCCGGAACGCCAAGCTAGCGGGGAGGAGGTGAGACAGCCGAGGAAACG
AGGAAGGAAACGAAAAAACCCGCATCTCACGGAAGAGGAAAGGAAGGCAC
AAAGGCAAGCGCAGAATAGAGAAAGTGCCAAGCTCTCTCGAATCCGTCGG
AAGCACTTGACTATGGAATACGAAAGGAGAGTGAACACTCTAGAAGGCGA
GAACGAAAATCTACGAGACACCATCAGTGGACTGGAGGATCGTCTTCAAA
TGCTACAGAATTTGCTTACCATCACTGTGCAACGGAGAAGCATCCCGCAA
GTTCACCCTTCATTAATATCATCGGCCACTGCAGCCATTGGCCAAGGGCC
ACAAACCCGACTCAATCCAACAATAAACCCTCATATACCCATGGCAGGCC
AGCCGGGCGCTGTCTCACAAGCTGCGCTTGTTTCACGGGCCCTCAACGCA
CAGGCTTTGATGGGAAACCCGAACATAATGGCTCGAACTGGTGCAATGCC
GCACACGGGTATGATGCATGCACAAAACGTGTTGAGCACGCAGCGCCCCG
TCAACGCTAACGACTCTCTTGCAGGACACACTCAAGCACTTTCAGCGTCA
AGGCCTCTAGGATCCAAGGCTCCGTCGCATTCAAATCCGTTGACAAACTT
TCCGTACAAAAACTTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3416456..3418474+

>Gvermi12102.t2 ID=Gvermi12102.t2|Name=Gvermi12102.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2019bp|location=Sequence derived from alignment at ScGOVlb_3404:3416456..3418474+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGGCAAGAACGCAGCAAACGGTGCTGTGCCTGGGTCTGACCTCGA
TCGCTACGGTCCTAGTTCATCTCTTCCTCTCCTCGTGCGCATGCCAGATG
GTGAGGACCACCAAATCGATATACCCTCAAATGCTTCTGTCAAAGACCTC
AAGACTTCCATTGCTAACCTGCCATGGCAACCCTCCGGCACCGACCCGCA
GCAACAATCACTTGAGCTCGAATTCGGAGGGGAAACATTGAATGAAAACC
AAACCTTGAGCCACTATCATATCCCAGAGGTATATGACCATGCGGATGGC
TTCCTGAAAACTATTTCGGACAGCGGCTACCTAGATCCTGATAAGAAGGT
CGAGGCTCTGGATAAGGCATGTGCCGTTGTACGAGGCATTTCAAGGGGAG
AAAAGGACATGGAGCGTCTCATTGGCGCTGCATTTGATGACGCCAATGAC
GATACACCTGCTTCACCGTCTGCTCAACCTTCGCTTCGCGCCATGAAGCG
TTCTCGTCTAAGTCGCATACCTTCCTTGAACTTGGGAGCACTGAACTACC
TTGGACCCGAAGGGAAGCCCTTGACAAAACTTTTCTCTCCGTCAGCGCCA
CCCACGCCTCGGCAACTCATTAGAAAGCTTAGTATCATGCGACCGGACCT
TTACGATTCAGAAGCTGCGGTAAAAGCTACAAGCTCCTTGTCACTGAGGA
ATATCGCAAACTTGGCAAATAACATACCTGCTCGCCCAAGTGAATCTCCG
AATATCGGGAGTGGAGAACTTAAGAGAGGGAACACATGGTTTCACGAAAT
TATGAATTCCATGAACACCTCCCTGCGAGATCCGAGAAAACGTGCAGTCC
ATCATGAGACCCAAGAAGAAGTAGAGGGTGATAGTGAAGGTGAAAATGGC
CTGGGAACGGACGAAGGAAACGTATCTGGTGACCGGAAGGATCTACCTTT
CGAGGGGCAAACAAAAATTCGGCTTCGATCCACCCAAAACAAAATGGACT
CGTCCTCAGCTGATGTAGATGAAAACGAAACAACGACAGCCCCGATAAAC
GATATGAACGTCATCAACGAAACGTTAATCAAGCCAGAAGGGGATACATT
GACTGCTGCGAAATCGTCGACAAAGGATCAAGATGGATCTAAGCCAGAAA
CAGATGGTGGCTCGTCGACTACATCTGTATCAAAGAAGGATCCGGAAGAG
GCAGAAATGAAGAAAAGCACTCGGAACCAGATAGATGTATCAAATACGAG
CATCCAAACGCCTCCGAAACAGGTAACAACGTCGAGCGAATCGCACTCTA
TAGTGCCATCTCGACCGATAGTGCATCAAGACAAACAAGTTATTGGCTTG
ACTCCGGAACGCCAAGCTAGCGGGGAGGAGGTGAGACAGCCGAGGAAACG
AGGAAGGAAACGAAAAAACCCGCATCTCACGGAAGAGGAAAGGAAGGCAC
AAAGGCAAGCGCAGAATAGAGAAAGTGCCAAGCTCTCTCGAATCCGTCGG
AAGCACTTGACTATGGAATACGAAAGGAGAGTGAACACTCTAGAAGGCGA
GAACGAAAATCTACGAGACACCATCAGTGGACTGGAGGATCGTCTTCAAA
TGCTACAGAATTTGCTTACCATCACTGTGCAACGGAGAAGCATCCCGCAA
GTTCACCCTTCATTAATATCATCGGCCACTGCAGCCATTGGCCAAGGGCC
ACAAACCCGACTCAATCCAACAATAAACCCTCATATACCCATGGCAGGCC
AGCCGGGCGCTGTCTCACAAGCTGCGCTTGTTTCACGGGCCCTCAACGCA
CAGGCTTTGATGGGAAACCCGAACATAATGGCTCGAACTGGTGCAATGCC
GCACACGGGTATGATGCATGCACAAAACGTGTTGAGCACGCAGCGCCCCG
TCAACGCTAACGACTCTCTTGCAGGACACACTCAAGCACTTTCAGCGTCA
AGGCCTCTAGGATCCAAGGCTCCGTCGCATTCAAATCCGTTGACAAACTT
TCCGTACAAAAACTTTTGA