Gvermi12470.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12470.t1
Unique NameGvermi12470.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4957958..4958443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010059231.1
PFAMsTyr_Deacylase
Max annot lvl35493|Streptophyta
KEGG koko:K07560
GOsGO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006450,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016070,GO:0016787,GO:0016788,GO:0019478,GO:0019752,GO:0034641,GO:0034660,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0046416,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Evalue7.29e-32
EggNOG OGsCOG1490@1|root,KOG3323@2759|Eukaryota,37PYW@33090|Viridiplantae,3GCK2@35493|Streptophyta
DescriptionD-tyrosyl-tRNA(Tyr) deacylase
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12470Gvermi12470Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4957958..4958443 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12470.t1.start1Gvermi12470.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4957958..4957960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12470.t1.CDS1Gvermi12470.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4957958..4958443 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12470.t1.exon1Gvermi12470.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4957958..4958443 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12470.t1.stop1Gvermi12470.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4958441..4958443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12470.t1Gvermi12470.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4957958..4958443 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12470.t1 ID=Gvermi12470.t1|Name=Gvermi12470.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=162bp
MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAA
AQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHR
AMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTIC
LTATDGRCQPW*
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spliced messenger RNA

>Gvermi12470.t1 ID=Gvermi12470.t1|Name=Gvermi12470.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp|location=Sequence derived from alignment at ScGOVlb_3404:4957958..4958443+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTCGTCGTGCAAAAGGTGTCGCAGGCTGCCGTCACGTCGTCCGT
CGACGCCCAGCCCACCGTCACCTCCTCCATCCACGCCGGGCTGTGCGTCC
TCGTCGGATTCGAGCGCAACGACACCGACCACGACGTCGACGCCGCCGCC
GCCCAGCTGCTCAAGCTGCGCCTCTTCACCGACCCCGCCACCAACGCCCG
CAACGCCCACAACGTGCTGCAGGCCGGCGCCGACGTCCTGCTCGTGTCGC
AGTTCACGCTCAACGCCGCCCTCAAGAgcggccgccccagcttccaccgc
gccatgccgccgcacctcgccgcccccctcttccaccgcctcgtcgagcg
ctgccgccccgtcgatcgcgccggcgccgccgTCAGGAGCGGCGTCTTCG
GCGCGCGCATGCAGCTGCAGCTCGTCAACGACGGCCCGTACACCATATGC
CTCACCGCCACCGACGGAAGGTGCCAGCCGTGGTAG
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protein sequence of Gvermi12470.t1

>Gvermi12470.t1 ID=Gvermi12470.t1|Name=Gvermi12470.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=162bp
MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAA
AQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHR
AMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTIC
LTATDGRCQPW*
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mRNA from alignment at ScGOVlb_3404:4957958..4958443+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12470.t1 ID=Gvermi12470.t1|Name=Gvermi12470.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp|location=Sequence derived from alignment at ScGOVlb_3404:4957958..4958443+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTCGTCGTGCAAAAGGTGTCGCAGGCTGCCGTCACGTCGTCCGT
CGACGCCCAGCCCACCGTCACCTCCTCCATCCACGCCGGGCTGTGCGTCC
TCGTCGGATTCGAGCGCAACGACACCGACCACGACGTCGACGCCGCCGCC
GCCCAGCTGCTCAAGCTGCGCCTCTTCACCGACCCCGCCACCAACGCCCG
CAACGCCCACAACGTGCTGCAGGCCGGCGCCGACGTCCTGCTCGTGTCGC
AGTTCACGCTCAACGCCGCCCTCAAGAgcggccgccccagcttccaccgc
gccatgccgccgcacctcgccgcccccctcttccaccgcctcgtcgagcg
ctgccgccccgtcgatcgcgccggcgccgccgTCAGGAGCGGCGTCTTCG
GCGCGCGCATGCAGCTGCAGCTCGTCAACGACGGCCCGTACACCATATGC
CTCACCGCCACCGACGGAAGGTGCCAGCCGTGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4957958..4958443+

>Gvermi12470.t1 ID=Gvermi12470.t1|Name=Gvermi12470.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=486bp|location=Sequence derived from alignment at ScGOVlb_3404:4957958..4958443+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTCGTCGTGCAAAAGGTGTCGCAGGCTGCCGTCACGTCGTCCGT
CGACGCCCAGCCCACCGTCACCTCCTCCATCCACGCCGGGCTGTGCGTCC
TCGTCGGATTCGAGCGCAACGACACCGACCACGACGTCGACGCCGCCGCC
GCCCAGCTGCTCAAGCTGCGCCTCTTCACCGACCCCGCCACCAACGCCCG
CAACGCCCACAACGTGCTGCAGGCCGGCGCCGACGTCCTGCTCGTGTCGC
AGTTCACGCTCAACGCCGCCCTCAAGAgcggccgccccagcttccaccgc
gccatgccgccgcacctcgccgcccccctcttccaccgcctcgtcgagcg
ctgccgccccgtcgatcgcgccggcgccgccgTCAGGAGCGGCGTCTTCG
GCGCGCGCATGCAGCTGCAGCTCGTCAACGACGGCCCGTACACCATATGC
CTCACCGCCACCGACGGAAGGTGCCAGCCGTGGTAG
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