Gvermi12180.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi12180.t1
Unique Name	Gvermi12180.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	315

Homology

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BLAST of Gvermi12180.t1 vs. uniprot
Match: A0A2V3J5P1_9FLOR (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5P1_9FLOR)

HSP 1 Score: 318 bits (815), Expect = 6.320e-105
Identity = 186/334 (55.69%), Postives = 207/334 (61.98%), Query Frame = 0

Query:    1 MPTTSLLSAASPVPSPPLLADVAARRPTVGQQPLR------------------KRMRKNLHPAHARYHVAGPGPPSAALPPSACRVSLPDELLVCILRFVDDASLLARLRTVCTQWCRVIDNTPAVWADVSFRRACFARRVVRHQRRLALSHRCGSHAVALAARAGNQWAFFLQRFLFDRHTLRAITIAQPTASLLVTAGVQFQSRPFPPWHDC-APRPGGVWIAVHAARWSHALHDAASDAATSSRLLRTAHARL-AVEHPVPPLPGGAVVGMIHVSDATYCAGATASSAPCWVWRIDRAVALRRPVRCAGFVGLWPMSAFLNDLVVHAMLAQ 314
            MP TSLL+A +  P          R+P   + PLR                  KR R     A  RYHVAGPGPP       +   SLPDE+LV I RF+DDASLLA+LRTV TQWCRVID  P+VW  VSFRRA F+R VV H   L L  R GS  V+LAA AGN WA FL+ FLFD H LRAITIAQP ASLLV+     QSRPFPPW  C AP   GVW+AVHAARWS A        + S R  R +H R        P LPGGA+VG+IHVS A +CAGA ASSAPCW+WRIDRAV L R VRCAGFVGLWPMS FL D VV A+  Q
Sbjct:    1 MPGTSLLAARTARPH---------RQPLPTKPPLRLHPRXXXXXXXXXXXXXTKRARHRPPIAQTRYHVAGPGPPHXXX--XSPTSSLPDEVLVTIFRFIDDASLLAQLRTVSTQWCRVIDANPSVWRSVSFRRAAFSRSVVAHGDALRLGARSGSATVSLAAAAGNHWARFLKHFLFDNHVLRAITIAQPCASLLVSGTQYLQSRPFPPWQGCHAPPLDGVWVAVHAARWSDAPPANPPALSPSHRASRLSHPRTPGGVATAPKLPGGALVGLIHVSGAVHCAGAAASSAPCWIWRIDRAVRLNRAVRCAGFVGLWPMSTFLTDFVVSAIHRQ 323

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BLAST of Gvermi12180.t1 vs. uniprot
Match: A0A3C1G5R3_9BACT (ASCH domain-containing protein (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A3C1G5R3_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 1.400e-9
Identity = 47/151 (31.13%), Postives = 69/151 (45.70%), Query Frame = 0

Query:  161 DRHTLRAITIAQPTASLLVTAGVQFQSRPFPPWHDCAPRPGGVWIAVHAARWSHALHDAASDAATSSRLLRTAHARLAVEHPVPPLPGGAVVGMIHVSDATYCAGATAS----SAPCWVWRIDRAVALRRPVRCAGFVGLWPMSAFLNDLV 307
            + + LRA+T+ QP ASLLV     +++RP     D   RPGG W+AVHA    H   D A D              LA +  +   P GA++G++ +  A     A  +    S P  +    R +A  RP  C G +GLW +   + D +
Sbjct:   20 EPYDLRALTVQQPWASLLVAGRKPWENRP----RDPGVRPGGQWVAVHAGLTLHPAADRARD--------------LAPDLDLSSAPRGAILGLVWMEPAVPVEDAAEAREWASGPLCI-PCSRPLAFERPYPCRGMLGLWRVPRPIVDAI 151

The following BLAST results are available for this feature:

BLAST of Gvermi12180.t1 vs. uniprot

BLAST of Gvermi12180.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J5P1_9FLOR	6.320e-105	55.69	F-box domain-containing protein n=1 Tax=Gracilario...	[more]
A0A3C1G5R3_9BACT	1.400e-9	31.13	ASCH domain-containing protein (Fragment) n=1 Tax=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 70..112 e-value: 2.2E-4 score: 30.5
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 69..115 e-value: 1.3E-11 score: 44.2
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 64..112 score: 11.405066
None	No IPR available	GENE3D	1.20.1280.50		coord: 66..112 e-value: 1.5E-7 score: 33.2
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..314
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..13
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 69..121

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3703710..3704654 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12180.t1	Gvermi12180.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_3404 3703710..3704654 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi12180.t1 ID=Gvermi12180.t1|Name=Gvermi12180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=315bp
MPTTSLLSAASPVPSPPLLADVAARRPTVGQQPLRKRMRKNLHPAHARYH
VAGPGPPSAALPPSACRVSLPDELLVCILRFVDDASLLARLRTVCTQWCR
VIDNTPAVWADVSFRRACFARRVVRHQRRLALSHRCGSHAVALAARAGNQ
WAFFLQRFLFDRHTLRAITIAQPTASLLVTAGVQFQSRPFPPWHDCAPRP
GGVWIAVHAARWSHALHDAASDAATSSRLLRTAHARLAVEHPVPPLPGGA
VVGMIHVSDATYCAGATASSAPCWVWRIDRAVALRRPVRCAGFVGLWPMS
AFLNDLVVHAMLAQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR036047	F-box-like_dom_sf