Gvermi12348.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12348.t1
Unique NameGvermi12348.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4301451..4302182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX47332
PFAMsPolyketide_cyc
Max annot lvl2759|Eukaryota
Evalue7.41e-30
EggNOG OGs2CXIA@1|root,2RXSU@2759|Eukaryota
DescriptionPolyketide cyclase / dehydrase and lipid transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12348Gvermi12348Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4301451..4302182 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12348.t1.stop1Gvermi12348.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4301451..4301453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12348.t1.CDS1Gvermi12348.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4301451..4302182 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12348.t1.exon1Gvermi12348.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4301451..4302182 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12348.t1.start1Gvermi12348.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4302180..4302182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12348.t1Gvermi12348.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4301451..4302182 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12348.t1 ID=Gvermi12348.t1|Name=Gvermi12348.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=244bp
MSIVRNSTAFASSAIYTSQAQCFNKIICCTSNRLVVHRLSRRPRLAVYCT
ASDTPTKSVKILERQVRIDSNTSDDKAREVLVSIKAENMGGRRRRVSGSV
KVETPMERVWKVITAYDKIHLYMPNILTSHLEKRGEHLYLDQTGLISRKL
SLTSRLLLRISEDFSQRSVTFSRVEGREFPEFEGRYVLKEGPDHVIVEYD
LVAQPFPLFPMWMVERKTLKEIPKMLAAIREEAIKGHYVPISE*
back to top

spliced messenger RNA

>Gvermi12348.t1 ID=Gvermi12348.t1|Name=Gvermi12348.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=732bp|location=Sequence derived from alignment at ScGOVlb_3404:4301451..4302182- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTATAGTACGCAATTCCACAGCTTTTGCTTCCTCTGCCATCTACAC
ATCTCAGGCACAATGTTTCAACAAGATTATCTGTTGCACATCAAACCGTC
TAGTCGTCCACCGATTGTCACGTCGACCACGCCTCGCTGTCTACTGCACT
GCGAGCGATACGCCAACAAAATCTGTGAAAATCCTCGAAAGGCAAGTACG
CATCGACTCTAACACTTCGGATGACAAAGCCAGAGAAGTGCTTGTCTCAA
TCAAAGCGGAGAACATGGGAGGTCGCCGTCGCCGTGTCTCGGGATCAGTA
AAGGTTGAAACACCAATGGAACGAGTGTGGAAAGTAATCACCGCTTATGA
TAAAATCCATCTATACATGCCAAATATACTAACTAGCCACCTCGAAAAGC
GGGGTGAGCATTTGTATCTTGATCAGACGGGTCTCATTTCTCGGAAACTA
TCTCTTACCTCAAGGTTGCTGCTTCGTATTTCTGAGGACTTCTCACAAAG
AAGCGTGACCTTCTCCCGAGTTGAAGGTCGCGAGTTTCCAGAGTTTGAAG
GTCGCTATGTCTTGAAGGAAGGTCCAGACCATGTCATCGTCGAATATGAT
CTTGTTGCACAGCCGTTCCCCTTGTTTCCCATGTGGATGGTCGAACGTAA
GACGTTAAAGGAAATTCCAAAAATGCTGGCAGCGATTCGGGAAGAGGCCA
TTAAGGGGCACTACGTGCCTATATCGGAATGA
back to top

protein sequence of Gvermi12348.t1

>Gvermi12348.t1 ID=Gvermi12348.t1|Name=Gvermi12348.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=244bp
MSIVRNSTAFASSAIYTSQAQCFNKIICCTSNRLVVHRLSRRPRLAVYCT
ASDTPTKSVKILERQVRIDSNTSDDKAREVLVSIKAENMGGRRRRVSGSV
KVETPMERVWKVITAYDKIHLYMPNILTSHLEKRGEHLYLDQTGLISRKL
SLTSRLLLRISEDFSQRSVTFSRVEGREFPEFEGRYVLKEGPDHVIVEYD
LVAQPFPLFPMWMVERKTLKEIPKMLAAIREEAIKGHYVPISE*
back to top

mRNA from alignment at ScGOVlb_3404:4301451..4302182-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12348.t1 ID=Gvermi12348.t1|Name=Gvermi12348.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=732bp|location=Sequence derived from alignment at ScGOVlb_3404:4301451..4302182- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTATAGTACGCAATTCCACAGCTTTTGCTTCCTCTGCCATCTACAC
ATCTCAGGCACAATGTTTCAACAAGATTATCTGTTGCACATCAAACCGTC
TAGTCGTCCACCGATTGTCACGTCGACCACGCCTCGCTGTCTACTGCACT
GCGAGCGATACGCCAACAAAATCTGTGAAAATCCTCGAAAGGCAAGTACG
CATCGACTCTAACACTTCGGATGACAAAGCCAGAGAAGTGCTTGTCTCAA
TCAAAGCGGAGAACATGGGAGGTCGCCGTCGCCGTGTCTCGGGATCAGTA
AAGGTTGAAACACCAATGGAACGAGTGTGGAAAGTAATCACCGCTTATGA
TAAAATCCATCTATACATGCCAAATATACTAACTAGCCACCTCGAAAAGC
GGGGTGAGCATTTGTATCTTGATCAGACGGGTCTCATTTCTCGGAAACTA
TCTCTTACCTCAAGGTTGCTGCTTCGTATTTCTGAGGACTTCTCACAAAG
AAGCGTGACCTTCTCCCGAGTTGAAGGTCGCGAGTTTCCAGAGTTTGAAG
GTCGCTATGTCTTGAAGGAAGGTCCAGACCATGTCATCGTCGAATATGAT
CTTGTTGCACAGCCGTTCCCCTTGTTTCCCATGTGGATGGTCGAACGTAA
GACGTTAAAGGAAATTCCAAAAATGCTGGCAGCGATTCGGGAAGAGGCCA
TTAAGGGGCACTACGTGCCTATATCGGAATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4301451..4302182-

>Gvermi12348.t1 ID=Gvermi12348.t1|Name=Gvermi12348.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=732bp|location=Sequence derived from alignment at ScGOVlb_3404:4301451..4302182- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTATAGTACGCAATTCCACAGCTTTTGCTTCCTCTGCCATCTACAC
ATCTCAGGCACAATGTTTCAACAAGATTATCTGTTGCACATCAAACCGTC
TAGTCGTCCACCGATTGTCACGTCGACCACGCCTCGCTGTCTACTGCACT
GCGAGCGATACGCCAACAAAATCTGTGAAAATCCTCGAAAGGCAAGTACG
CATCGACTCTAACACTTCGGATGACAAAGCCAGAGAAGTGCTTGTCTCAA
TCAAAGCGGAGAACATGGGAGGTCGCCGTCGCCGTGTCTCGGGATCAGTA
AAGGTTGAAACACCAATGGAACGAGTGTGGAAAGTAATCACCGCTTATGA
TAAAATCCATCTATACATGCCAAATATACTAACTAGCCACCTCGAAAAGC
GGGGTGAGCATTTGTATCTTGATCAGACGGGTCTCATTTCTCGGAAACTA
TCTCTTACCTCAAGGTTGCTGCTTCGTATTTCTGAGGACTTCTCACAAAG
AAGCGTGACCTTCTCCCGAGTTGAAGGTCGCGAGTTTCCAGAGTTTGAAG
GTCGCTATGTCTTGAAGGAAGGTCCAGACCATGTCATCGTCGAATATGAT
CTTGTTGCACAGCCGTTCCCCTTGTTTCCCATGTGGATGGTCGAACGTAA
GACGTTAAAGGAAATTCCAAAAATGCTGGCAGCGATTCGGGAAGAGGCCA
TTAAGGGGCACTACGTGCCTATATCGGAATGA
back to top