Gvermi1645.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1645.t1
Unique NameGvermi1645.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_318contigScGOVlb_318:2..1302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO29116
PFAMsPhage_integrase
Max annot lvl2759|Eukaryota
Evalue1.9e-10
EggNOG OGs2A75T@1|root,2RYDE@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1645Gvermi1645Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_318 2..1302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1645.t1Gvermi1645.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_318 2..1302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1645.t1.CDS1Gvermi1645.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_318 2..838 +
Gvermi1645.t1.CDS2Gvermi1645.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_318 890..1302 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1645.t1.exon1Gvermi1645.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_318 2..838 +
Gvermi1645.t1.exon2Gvermi1645.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_318 890..1302 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1645.t1.intron1Gvermi1645.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_318 839..889 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1645.t1.stop1Gvermi1645.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_318 1300..1302 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1645.t1 ID=Gvermi1645.t1|Name=Gvermi1645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=417bp
XSTFVGVAKWLHRDASSEIKAANFVGVRSIVALRVIRNRLQARERLEKKK
TARDYADEGRWLEWDVFKEAVSKLHRDYTESAEEDPDSEETARLLHDVCM
LRLYEASPSRSGEVRLLEYIEWDTLTDLRGRLSVGQYAERERRNIITKRP
TGAGGWCTFLANYKSVKFHGCDETEFSEELFPELSAVLDTYLEGPHQRHL
AKLGVDWVFVTAAGARFEPNEFSTYLTALLHRLTGARVNSNLLRSSFISN
LYSKTADPAVRQSAAAAMRHGVPMAEAVYDRRHPNARKELAQQYLSTKRD
RDEEAPYDPNERPIKAIDCIFSVGDCCVVPYLDADTKEHSFHFARIVKIN
TGAGELVLMELKSLPDDPTIYRAQLSCVWIEPFGACYHTVYSFDNTTGDY
RLLASRDEILTLFMQK*
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spliced messenger RNA

>Gvermi1645.t1 ID=Gvermi1645.t1|Name=Gvermi1645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1250bp|location=Sequence derived from alignment at ScGOVlb_318:2..1302+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTTCCACTTTTGTCGGTGTCGCCAAATGGTTGCATCGAGACGCATCTTCG
GAGATCAAGGCTGCCAATTTTGTCGGCGTCCGGTCGATTGTTGCCCTCCG
TGTAATTCGCAACCGGTTGCAAGCCCGAGAGCGATTGGAGAAGAAGAAGA
CTGCACGAGACTACGCCGATGAGGGCAGATGGCTCGAATGGGACGTCTTT
AAGGAGGCGGTCAGCAAGTTACATCGAGACTACACGGAGAGTGCCGAGGA
AGACCCTGACTCGGAGGAGACGGCGAGGCTGCTGCACGATGTCTGCATGC
TGCGTCTGTACGAGGCCAGCCCTTCTCGATCCGGCGAGGTCAGGTTGCTC
GAGTACATTGAGTGGGACACCTTGACCGATCTACGTGGACGCCTCAGTGT
CGGTCAATACGCCGAGCGCGAGCGCCGCAACATCATCACCAAGCGACCGA
CGGGTGCCGGTGGTTGGTGCACGTTTCTCGCCAACTACAAGAGCGTGAAA
TTTCACGGCTGCGATGAGACGGAGTTCTCGGAGGAGTTGTTTCCCGAGCT
CAGCGCCGTCCTCGACACGTACCTCGAAGGTCCTCATCAACGTCATTTGG
CGAAGCTGGGTGTTGATTGGGTGTTTGTCACCGCTGCCGGCGCGCGCTTT
GAGCCGAACGAGTTCAGTACGTACCTGACCGCGCTGCTTCATCGGTTGAC
AGGCGCCCGCGTGAACTCGAATCTGCTGCGCTCTTCGTTTATCTCCAACT
TGTACTCAAAGACAGCCGATCCTGCAGTCCGACAGTCGGCCGCTGCTGCC
ATGCGCCACGGTGTCCCGATGGCTGAAGCCGTCTACGACCGCCGTCATCC
CAACGCCCGCAAAGAGCTCGCTCAGCAGTATTTGTCCACGAAGCGCGACC
GTGATGAGGAGGCACCCTACGACCCCAACGAGCGCCCGATCAAGGCGATT
GACTGCATCTTCTCCGTTGGCGATTGTTGTGTCGTTCCTTACTTGGATGC
GGACACAAAGGAGCATTCGTTTCATTTCGCTCGCATTGTGAAAATCAACA
CCGGAGCTGGTGAGCTCGTGTTGATGGAGCTCAAATCGCTCCCAGACGAC
CCGACAATCTACCGTGCCCAGCTTTCCTGCGTTTGGATTGAGCCTTTTGG
TGCCTGCTACCATACGGTGTATTCTTTTGACAACACTACGGGTGACTACC
GGCTCCTCGCATCGCGGGACGAGATTCTCACCTTGTTCATGCAAAAGTAA
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protein sequence of Gvermi1645.t1

>Gvermi1645.t1 ID=Gvermi1645.t1|Name=Gvermi1645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=417bp
XSTFVGVAKWLHRDASSEIKAANFVGVRSIVALRVIRNRLQARERLEKKK
TARDYADEGRWLEWDVFKEAVSKLHRDYTESAEEDPDSEETARLLHDVCM
LRLYEASPSRSGEVRLLEYIEWDTLTDLRGRLSVGQYAERERRNIITKRP
TGAGGWCTFLANYKSVKFHGCDETEFSEELFPELSAVLDTYLEGPHQRHL
AKLGVDWVFVTAAGARFEPNEFSTYLTALLHRLTGARVNSNLLRSSFISN
LYSKTADPAVRQSAAAAMRHGVPMAEAVYDRRHPNARKELAQQYLSTKRD
RDEEAPYDPNERPIKAIDCIFSVGDCCVVPYLDADTKEHSFHFARIVKIN
TGAGELVLMELKSLPDDPTIYRAQLSCVWIEPFGACYHTVYSFDNTTGDY
RLLASRDEILTLFMQK*
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mRNA from alignment at ScGOVlb_318:2..1302+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1645.t1 ID=Gvermi1645.t1|Name=Gvermi1645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1301bp|location=Sequence derived from alignment at ScGOVlb_318:2..1302+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTTCCACTTTTGTCGGTGTCGCCAAATGGTTGCATCGAGACGCATCTTCG
GAGATCAAGGCTGCCAATTTTGTCGGCGTCCGGTCGATTGTTGCCCTCCG
TGTAATTCGCAACCGGTTGCAAGCCCGAGAGCGATTGGAGAAGAAGAAGA
CTGCACGAGACTACGCCGATGAGGGCAGATGGCTCGAATGGGACGTCTTT
AAGGAGGCGGTCAGCAAGTTACATCGAGACTACACGGAGAGTGCCGAGGA
AGACCCTGACTCGGAGGAGACGGCGAGGCTGCTGCACGATGTCTGCATGC
TGCGTCTGTACGAGGCCAGCCCTTCTCGATCCGGCGAGGTCAGGTTGCTC
GAGTACATTGAGTGGGACACCTTGACCGATCTACGTGGACGCCTCAGTGT
CGGTCAATACGCCGAGCGCGAGCGCCGCAACATCATCACCAAGCGACCGA
CGGGTGCCGGTGGTTGGTGCACGTTTCTCGCCAACTACAAGAGCGTGAAA
TTTCACGGCTGCGATGAGACGGAGTTCTCGGAGGAGTTGTTTCCCGAGCT
CAGCGCCGTCCTCGACACGTACCTCGAAGGTCCTCATCAACGTCATTTGG
CGAAGCTGGGTGTTGATTGGGTGTTTGTCACCGCTGCCGGCGCGCGCTTT
GAGCCGAACGAGTTCAGTACGTACCTGACCGCGCTGCTTCATCGGTTGAC
AGGCGCCCGCGTGAACTCGAATCTGCTGCGCTCTTCGTTTATCTCCAACT
TGTACTCAAAGACAGCCGATCCTGCAGTCCGACAGTCGGCCGCTGCTGCC
ATGCGCCACGGTGTCCCGATGGCTGAAGCCGTCTACGGTGAGTTATTGTT
TTTTCTGTGCAGTCGATTGCTCACCGCTGCTTTGATAGACCGCCGTCATC
CCAACGCCCGCAAAGAGCTCGCTCAGCAGTATTTGTCCACGAAGCGCGAC
CGTGATGAGGAGGCACCCTACGACCCCAACGAGCGCCCGATCAAGGCGAT
TGACTGCATCTTCTCCGTTGGCGATTGTTGTGTCGTTCCTTACTTGGATG
CGGACACAAAGGAGCATTCGTTTCATTTCGCTCGCATTGTGAAAATCAAC
ACCGGAGCTGGTGAGCTCGTGTTGATGGAGCTCAAATCGCTCCCAGACGA
CCCGACAATCTACCGTGCCCAGCTTTCCTGCGTTTGGATTGAGCCTTTTG
GTGCCTGCTACCATACGGTGTATTCTTTTGACAACACTACGGGTGACTAC
CGGCTCCTCGCATCGCGGGACGAGATTCTCACCTTGTTCATGCAAAAGTA
A
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Coding sequence (CDS) from alignment at ScGOVlb_318:2..1302+

>Gvermi1645.t1 ID=Gvermi1645.t1|Name=Gvermi1645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1250bp|location=Sequence derived from alignment at ScGOVlb_318:2..1302+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTTCCACTTTTGTCGGTGTCGCCAAATGGTTGCATCGAGACGCATCTTCG
GAGATCAAGGCTGCCAATTTTGTCGGCGTCCGGTCGATTGTTGCCCTCCG
TGTAATTCGCAACCGGTTGCAAGCCCGAGAGCGATTGGAGAAGAAGAAGA
CTGCACGAGACTACGCCGATGAGGGCAGATGGCTCGAATGGGACGTCTTT
AAGGAGGCGGTCAGCAAGTTACATCGAGACTACACGGAGAGTGCCGAGGA
AGACCCTGACTCGGAGGAGACGGCGAGGCTGCTGCACGATGTCTGCATGC
TGCGTCTGTACGAGGCCAGCCCTTCTCGATCCGGCGAGGTCAGGTTGCTC
GAGTACATTGAGTGGGACACCTTGACCGATCTACGTGGACGCCTCAGTGT
CGGTCAATACGCCGAGCGCGAGCGCCGCAACATCATCACCAAGCGACCGA
CGGGTGCCGGTGGTTGGTGCACGTTTCTCGCCAACTACAAGAGCGTGAAA
TTTCACGGCTGCGATGAGACGGAGTTCTCGGAGGAGTTGTTTCCCGAGCT
CAGCGCCGTCCTCGACACGTACCTCGAAGGTCCTCATCAACGTCATTTGG
CGAAGCTGGGTGTTGATTGGGTGTTTGTCACCGCTGCCGGCGCGCGCTTT
GAGCCGAACGAGTTCAGTACGTACCTGACCGCGCTGCTTCATCGGTTGAC
AGGCGCCCGCGTGAACTCGAATCTGCTGCGCTCTTCGTTTATCTCCAACT
TGTACTCAAAGACAGCCGATCCTGCAGTCCGACAGTCGGCCGCTGCTGCC
ATGCGCCACGGTGTCCCGATGGCTGAAGCCGTCTACGACCGCCGTCATCC
CAACGCCCGCAAAGAGCTCGCTCAGCAGTATTTGTCCACGAAGCGCGACC
GTGATGAGGAGGCACCCTACGACCCCAACGAGCGCCCGATCAAGGCGATT
GACTGCATCTTCTCCGTTGGCGATTGTTGTGTCGTTCCTTACTTGGATGC
GGACACAAAGGAGCATTCGTTTCATTTCGCTCGCATTGTGAAAATCAACA
CCGGAGCTGGTGAGCTCGTGTTGATGGAGCTCAAATCGCTCCCAGACGAC
CCGACAATCTACCGTGCCCAGCTTTCCTGCGTTTGGATTGAGCCTTTTGG
TGCCTGCTACCATACGGTGTATTCTTTTGACAACACTACGGGTGACTACC
GGCTCCTCGCATCGCGGGACGAGATTCTCACCTTGTTCATGCAAAAGTAA
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