Gvermi4301.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4301.t1
Unique NameGvermi4301.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length320
Homology
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BLAST of Gvermi4301.t1 vs. uniprot
Match: A0A2V3J137_9FLOR (GOLD domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J137_9FLOR)

HSP 1 Score: 328 bits (841), Expect = 8.060e-110
Identity = 158/234 (67.52%), Postives = 198/234 (84.62%), Query Frame = 0 
Query:   88 SAFQFILPAKTRKCFKEDIPLSTNTLFTYTVAQGTGEMPVSVRITDMTGTAILLRQGVDHGLFTFRSPDKIPNVPQRNDWSLRDE--DTDDDAYFRAVPDGAGDNRVPYTFCFEHVSSLLFPHLHVHERARERQIIFNIKSGADSKTQEYYDKLAKERHLTTTEEAFHIVEDRVSEIVRLVDEMRERELRMDHLNKRTQKMITMYAILTCILIAAGAAYASYTTFTYLSQGKRI 319
            +A QFIL AK+RKCF+ED+PLST TL TYTVAQG GEMPVS+ + D+TG +IL RQ +DHG+FTFRSPD+IP + Q++DWSLRD+   T DDAYFRA+P GAGD+R+PY FCFEH SS+ FP  H+  R  +R+IIF+I+SG D+KT EYYDKLAKE+HLT+TEEAF+IVEDRVSEIVRLVDEMRERELR+DHLN+RTQ+++T Y+I+TCI +A GA YAS+ TF +L++ K I
Sbjct:   20 NALQFILQAKSRKCFREDVPLSTETLLTYTVAQGLGEMPVSLSVRDITGKSILDRQAIDHGVFTFRSPDEIPTIDQKSDWSLRDDYDGTGDDAYFRAIPGGAGDDRIPYYFCFEHSSSMRFPTFHISGRPHQRRIIFSIRSGTDAKTLEYYDKLAKEKHLTSTEEAFNIVEDRVSEIVRLVDEMRERELRLDHLNRRTQRVVTTYSIITCICVAIGAIYASFATFKHLARQKVI 253
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BLAST of Gvermi4301.t1 vs. uniprot
Match: R7Q882_CHOCR (GOLD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q882_CHOCR)

HSP 1 Score: 251 bits (641), Expect = 8.360e-79
Identity = 124/240 (51.67%), Postives = 174/240 (72.50%), Query Frame = 0 
Query:   81 LFYSVLLSAFQFILPAKTRKCFKEDIPLSTNTLFTYTVAQGTGEMPVSVRITDMTGTAILLRQGVDHGLFTFRSPDKIPNVPQRNDWSLRDED--TDDDAYF-RAVPDGAGDNRVPYTFCFEHVSSLLFPHLHVHERARERQIIFNIKSGADSKTQEYYDKLAKERHLTTTEEAFHIVEDRVSEIVRLVDEMRERELRMDHLNKRTQKMITMYAILTCILIAAGAAYASYTTFTYLSQGK 317
            LF +  + + QF+L +KTRKCF+EDIPL ++   TYTVAQG G+MP+S+RITD TG  +L +  +DHG+F+FR+P+ +P V +R+ W L+D++   DDDAY+ +A PD  GD+R  Y FCFEHV++     + +  +A +R++IF +KSG D +T EYYDKLAKE+HL++TEE F IVED+VS+IVRL+DEMR+RELRM HL+ RT +++  Y+ L C  IA GA   S  TF  L + K
Sbjct:   67 LFLASTVQSLQFVLESKTRKCFREDIPLRSDATITYTVAQGNGDMPISLRITDSTGRIVLHKDAIDHGVFSFRAPNSLPGVAERDSWELKDDEYGEDDDAYWNKAGPDAVGDDRTSYRFCFEHVAA----GISLRAQALKRRVIFEVKSGNDVRTMEYYDKLAKEKHLSSTEELFRIVEDKVSDIVRLIDEMRQRELRMAHLSSRTSRVVAWYSALACGAIATGAVITSVATFKTLHREK 302
The following BLAST results are available for this feature:
BLAST of Gvermi4301.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J137_9FLOR8.060e-11067.52GOLD domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q882_CHOCR8.360e-7951.67GOLD domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 262..282
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 308..319
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..94
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 287..307
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 95..286
NoneNo IPR availableTMHMMTMhelixcoord: 71..93
NoneNo IPR availableTMHMMTMhelixcoord: 286..308
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 89..311
e-value: 2.3E-14
score: 63.7
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 89..305
e-value: 1.3E-22
score: 80.6
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 99..226
score: 9.183567
IPR015720Transmembrane emp24 domain-containing proteinPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 87..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1114467..1115636 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4301.t1Gvermi4301.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 1114467..1115636 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4301.t1 ID=Gvermi4301.t1|Name=Gvermi4301.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=320bp
MYGSTWNNSVRLGIVHIDLFSFGNSQSLTEKFSFSSTDHGPWCTVETDNG
HPSDRGIASDDLFFRGEEVDIVYESCFTGGLFYSVLLSAFQFILPAKTRK
CFKEDIPLSTNTLFTYTVAQGTGEMPVSVRITDMTGTAILLRQGVDHGLF
TFRSPDKIPNVPQRNDWSLRDEDTDDDAYFRAVPDGAGDNRVPYTFCFEH
VSSLLFPHLHVHERARERQIIFNIKSGADSKTQEYYDKLAKERHLTTTEE
AFHIVEDRVSEIVRLVDEMRERELRMDHLNKRTQKMITMYAILTCILIAA
GAAYASYTTFTYLSQGKRI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
IPR015720Emp24-like