Gvermi7036.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7036.t1
Unique NameGvermi7036.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1104770..1106053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702997.1
PFAMsCys_Met_Meta_PP
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00056,RC00069,RC00420,RC02848,RC02866
KEGG koko:K01739
KEGG ReactionR00999,R01288,R02508,R03217,R03260,R04944,R04945,R04946
KEGG Pathwayko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230
KEGG ModuleM00017
Evalue1.07e-168
EggNOG OGsCOG0626@1|root,KOG0053@2759|Eukaryota
EC2.5.1.48
Descriptioncystathionine gamma-synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7036Gvermi7036Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1104770..1106053 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7036.t1.stop1Gvermi7036.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1104770..1104772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7036.t1.CDS1Gvermi7036.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1104770..1106053 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7036.t1.exon1Gvermi7036.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1104770..1106053 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7036.t1.start1Gvermi7036.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1106051..1106053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7036.t1Gvermi7036.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1104770..1106053 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7036.t1 ID=Gvermi7036.t1|Name=Gvermi7036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=428bp
LDQLDSLLVDGESRLRMHAAVRDGRAQTRAVHGGERVRGGKKTRALLDAV
QMPIAQTATFAFRSTADCIQYNCGTYESFEYGRYGNPTTRAVEEKLMSLE
RAEDCVLSASGMNAVTTMLLALVPRDGHIVVTTDCYRRTRQFVDTVLPNM
GVGRTVVEADDLAALQHALRVHRPQLYFSEAPTNPLLRVVDVPRIAAMCR
AAGVLSVIDSTFATPVNLRPVELGADLVLHSGTKYLAGHHDVLCGALAGR
AELIARVRALHGVLGGVIDPHAAFLVGRGLKTLGVRMVAHNRNAAAVGAA
LSAHAKVGAVHLPSLPTHADYATAARVLPHGTGGVLSFELVGDGCAWSRA
TFEAAGRFVDALTLPYIGPSMGGCESMVEQVCIMGYFDKPLHERRRLGIS
NGLIRLSCGIEDTHDLVRDVLSALEAV*
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spliced messenger RNA

>Gvermi7036.t1 ID=Gvermi7036.t1|Name=Gvermi7036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_24229:1104770..1106053- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGACCAGCTGGACTCGCTGCTGGTGGACGGCGAATCGCGGCTGCGCAT
GCACGCCGCCGTGCGCGACGGCCGCGCGCAGACGCGCGCCGTGCACGGCG
GCGAGCGCGTGCGCGGCGGCAAGAAGACCAGGGCGCTGCTGGACGCGGTG
CAGATGCCCATCGCGCAGACGGCCACGTTCGCGTTCCGCTCCACGGCCGA
CTGCATCCAGTACAACTGCGGCACGTATGAGTCGTTCGAGTACGGCCGCT
ACGGCAACCCGACGACGCGCGCCGTGGAGGAGAAGCTCATGTCGCTGGAG
CGCGCCGAGGACTGCGTGCTGTCGGCCAGCGGCATGAACGCGGTGACGAC
GATGCTGCTGGCGCTGGTGCCGCGCGACGGCCACATCGTGGTCACCACGG
ACTGCTACCGGCGCACGCGGCAGTTTGTGGACACGGTGCTGCCCAACATG
GGCGTGGGGCGCACGGTGGTGGAGGCGGACGACCTGGCGGCGCTGCAGCA
CGCGCTGCGCGTGCACCGGCCGCAGCTGTACTTCTCGGAGGCGCCCACCA
ACCCGCTGCTGCGCGTGGTGGACGTGCCGCGCATCGCGGCCATGTGCCGC
GCGGCGGGCGTGCTGAGCGTGATCGACTCGACGTTCGCCACGCCGGTGAA
CCTGCGGCCGGTGGAGCTCGGCGCCGACCTGGTGCTGCACTCGGGCACCA
AGTACCTGGCCGGGCACCACGACGTGCTGTGCGGCGCGCTGGCCGGGCGC
GCGGAGCTGATTGCGCGCGTGCGCGCGCTGCACGGCGTGCTGGGCGGCGT
CATCGACCCGCACGCCGCGTTCCTGGTCGGGCGCGGGCTCAAGACGCTGG
GCGTGCGCATGGTGGCGCACAACCGCAACGCGGCGGCGGTGGGCGCGGCG
CTGAGCGCGCACGCCAAGGTGGGCGCCGTGCACCTGCCGTCGCTGCCGAC
GCACGCCGACTACGCGACGGCGGCGCGCGTGCTGCCGCACGGCACGGGCG
GCGTGCTGAGCTTCGAGCTGGTGGGCGACGGCTGCGCGTGGAGCCGCGCC
ACGTTCGAGGCGGCCGGGCGCTTTGTGGACGCGCTCACGCTGCCGTACAT
CGGCCCCAGCATGGGCGGCTGCGAGTCCATGGTGGAGCAGGTGTGCATCA
TGGGCTACTTTGACAAGCCGCTGCACGAGCGCCGGCGGCTGGGCATCAGC
AACGGCCTCATCCGCCTTTCGTGCGGCATTGAGGACACGCACGACCTGGT
GCGCGACGTGCTGTCGGCGCTGGAGGCCGTGTGA
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protein sequence of Gvermi7036.t1

>Gvermi7036.t1 ID=Gvermi7036.t1|Name=Gvermi7036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
LDQLDSLLVDGESRLRMHAAVRDGRAQTRAVHGGERVRGGKKTRALLDAV
QMPIAQTATFAFRSTADCIQYNCGTYESFEYGRYGNPTTRAVEEKLMSLE
RAEDCVLSASGMNAVTTMLLALVPRDGHIVVTTDCYRRTRQFVDTVLPNM
GVGRTVVEADDLAALQHALRVHRPQLYFSEAPTNPLLRVVDVPRIAAMCR
AAGVLSVIDSTFATPVNLRPVELGADLVLHSGTKYLAGHHDVLCGALAGR
AELIARVRALHGVLGGVIDPHAAFLVGRGLKTLGVRMVAHNRNAAAVGAA
LSAHAKVGAVHLPSLPTHADYATAARVLPHGTGGVLSFELVGDGCAWSRA
TFEAAGRFVDALTLPYIGPSMGGCESMVEQVCIMGYFDKPLHERRRLGIS
NGLIRLSCGIEDTHDLVRDVLSALEAV*
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mRNA from alignment at ScGOVlb_24229:1104770..1106053-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7036.t1 ID=Gvermi7036.t1|Name=Gvermi7036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_24229:1104770..1106053- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGACCAGCTGGACTCGCTGCTGGTGGACGGCGAATCGCGGCTGCGCAT
GCACGCCGCCGTGCGCGACGGCCGCGCGCAGACGCGCGCCGTGCACGGCG
GCGAGCGCGTGCGCGGCGGCAAGAAGACCAGGGCGCTGCTGGACGCGGTG
CAGATGCCCATCGCGCAGACGGCCACGTTCGCGTTCCGCTCCACGGCCGA
CTGCATCCAGTACAACTGCGGCACGTATGAGTCGTTCGAGTACGGCCGCT
ACGGCAACCCGACGACGCGCGCCGTGGAGGAGAAGCTCATGTCGCTGGAG
CGCGCCGAGGACTGCGTGCTGTCGGCCAGCGGCATGAACGCGGTGACGAC
GATGCTGCTGGCGCTGGTGCCGCGCGACGGCCACATCGTGGTCACCACGG
ACTGCTACCGGCGCACGCGGCAGTTTGTGGACACGGTGCTGCCCAACATG
GGCGTGGGGCGCACGGTGGTGGAGGCGGACGACCTGGCGGCGCTGCAGCA
CGCGCTGCGCGTGCACCGGCCGCAGCTGTACTTCTCGGAGGCGCCCACCA
ACCCGCTGCTGCGCGTGGTGGACGTGCCGCGCATCGCGGCCATGTGCCGC
GCGGCGGGCGTGCTGAGCGTGATCGACTCGACGTTCGCCACGCCGGTGAA
CCTGCGGCCGGTGGAGCTCGGCGCCGACCTGGTGCTGCACTCGGGCACCA
AGTACCTGGCCGGGCACCACGACGTGCTGTGCGGCGCGCTGGCCGGGCGC
GCGGAGCTGATTGCGCGCGTGCGCGCGCTGCACGGCGTGCTGGGCGGCGT
CATCGACCCGCACGCCGCGTTCCTGGTCGGGCGCGGGCTCAAGACGCTGG
GCGTGCGCATGGTGGCGCACAACCGCAACGCGGCGGCGGTGGGCGCGGCG
CTGAGCGCGCACGCCAAGGTGGGCGCCGTGCACCTGCCGTCGCTGCCGAC
GCACGCCGACTACGCGACGGCGGCGCGCGTGCTGCCGCACGGCACGGGCG
GCGTGCTGAGCTTCGAGCTGGTGGGCGACGGCTGCGCGTGGAGCCGCGCC
ACGTTCGAGGCGGCCGGGCGCTTTGTGGACGCGCTCACGCTGCCGTACAT
CGGCCCCAGCATGGGCGGCTGCGAGTCCATGGTGGAGCAGGTGTGCATCA
TGGGCTACTTTGACAAGCCGCTGCACGAGCGCCGGCGGCTGGGCATCAGC
AACGGCCTCATCCGCCTTTCGTGCGGCATTGAGGACACGCACGACCTGGT
GCGCGACGTGCTGTCGGCGCTGGAGGCCGTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1104770..1106053-

>Gvermi7036.t1 ID=Gvermi7036.t1|Name=Gvermi7036.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1284bp|location=Sequence derived from alignment at ScGOVlb_24229:1104770..1106053- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGACCAGCTGGACTCGCTGCTGGTGGACGGCGAATCGCGGCTGCGCAT
GCACGCCGCCGTGCGCGACGGCCGCGCGCAGACGCGCGCCGTGCACGGCG
GCGAGCGCGTGCGCGGCGGCAAGAAGACCAGGGCGCTGCTGGACGCGGTG
CAGATGCCCATCGCGCAGACGGCCACGTTCGCGTTCCGCTCCACGGCCGA
CTGCATCCAGTACAACTGCGGCACGTATGAGTCGTTCGAGTACGGCCGCT
ACGGCAACCCGACGACGCGCGCCGTGGAGGAGAAGCTCATGTCGCTGGAG
CGCGCCGAGGACTGCGTGCTGTCGGCCAGCGGCATGAACGCGGTGACGAC
GATGCTGCTGGCGCTGGTGCCGCGCGACGGCCACATCGTGGTCACCACGG
ACTGCTACCGGCGCACGCGGCAGTTTGTGGACACGGTGCTGCCCAACATG
GGCGTGGGGCGCACGGTGGTGGAGGCGGACGACCTGGCGGCGCTGCAGCA
CGCGCTGCGCGTGCACCGGCCGCAGCTGTACTTCTCGGAGGCGCCCACCA
ACCCGCTGCTGCGCGTGGTGGACGTGCCGCGCATCGCGGCCATGTGCCGC
GCGGCGGGCGTGCTGAGCGTGATCGACTCGACGTTCGCCACGCCGGTGAA
CCTGCGGCCGGTGGAGCTCGGCGCCGACCTGGTGCTGCACTCGGGCACCA
AGTACCTGGCCGGGCACCACGACGTGCTGTGCGGCGCGCTGGCCGGGCGC
GCGGAGCTGATTGCGCGCGTGCGCGCGCTGCACGGCGTGCTGGGCGGCGT
CATCGACCCGCACGCCGCGTTCCTGGTCGGGCGCGGGCTCAAGACGCTGG
GCGTGCGCATGGTGGCGCACAACCGCAACGCGGCGGCGGTGGGCGCGGCG
CTGAGCGCGCACGCCAAGGTGGGCGCCGTGCACCTGCCGTCGCTGCCGAC
GCACGCCGACTACGCGACGGCGGCGCGCGTGCTGCCGCACGGCACGGGCG
GCGTGCTGAGCTTCGAGCTGGTGGGCGACGGCTGCGCGTGGAGCCGCGCC
ACGTTCGAGGCGGCCGGGCGCTTTGTGGACGCGCTCACGCTGCCGTACAT
CGGCCCCAGCATGGGCGGCTGCGAGTCCATGGTGGAGCAGGTGTGCATCA
TGGGCTACTTTGACAAGCCGCTGCACGAGCGCCGGCGGCTGGGCATCAGC
AACGGCCTCATCCGCCTTTCGTGCGGCATTGAGGACACGCACGACCTGGT
GCGCGACGTGCTGTCGGCGCTGGAGGCCGTGTGA
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