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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 981085.XP_010094987.1 |
| PFAMs | Sec6 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K06110 |
| Evalue | 2.06e-12 |
| EggNOG OGs | COG5173@1|root,KOG2286@2759|Eukaryota,37QDU@33090|Viridiplantae,3G970@35493|Streptophyta,4JF4X@91835|fabids |
| Description | exocyst complex component |
| COG category | U |
| BRITE | ko00000,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi7022.t1 ID=Gvermi7022.t1|Name=Gvermi7022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=903bp MSQIQQEAITLVSDAISGADGNLLPAIDTASEKWQIELRDAQSTARKLLA QVLEERETLRKSLASAADLWYILQPDFPADDPNDEAQQPPDFCEGSFPAT PAQLSAVRALHNISQTLFWAEFTMEAPSALELATTHLENIHGNGLDKVVK GNPALLVDAHAHLTAAERLRDLILLEIPTPSENPNPVKWFSKAAETRHLL EDIVLRGIFRNVVQLSQVNPCILVAGARVVESEEAEDEWWTDHIHKNALE ERGAVVRAFGTHDYKKRALNAIVESLQAQFWQRERELRTFKNQMANSDND ISPNLDREFHVSSILEWIEQRRSETEIVRRYVTPCLPPSFQVSQLYESEL HRQFMRLLSQLLHLNNADGSMLLSEVDLIKLTSWYSKYRSEVDEQSESID CFLGEKDRRRLIVALQQHCARSVIASITSQICPQEHVDVGVEAKQHSAAK RKRLRVSKAVLCRGDLSQVIMDCVGEQVRQMLDLKMRDLDQAIAQVVSDI LIDFQTEVRQVIANDKIDCTAEDGGSYLCATANHMAKCLGFSEELRDSFI PLGLDHHRPEIEERMESVIDGFRSTAAEAIHFLIDGMKPSLEMHVTRLFA PSTGTEVVLDMLAVLADYFKDYKKALLDYHFEYLAIETLKRVVVWYLVPF LRLTHPRLDESVARRYTSLPTFEDQTEDVEEISQNVSRRLSTRRSDASSR GVLSSTAGLASMSGGAVLALVEKDISNISAFMDKQVPLHQRKQLKPALEP LWAIQALYSCDSTAPAMAEAFRDAKLMIDRALRPLWAMEYGAHGQFGLRN AEKIWETRHDLSPSVIVEAINMCRINIDRIDTHTPSRMSSVDDGRIWSSR YSDPNGSFSERYMERSGGYNEQNLSSSSLVWTPRSCSSSIAKRVSLENRP RR* back to topspliced messenger RNA >Gvermi7022.t1 ID=Gvermi7022.t1|Name=Gvermi7022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2709bp|location=Sequence derived from alignment at ScGOVlb_24229:972576..975284- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCACAAATCCAGCAAGAGGCTATCACGCTTGTTTCTGACGCCATTTC CGGCGCTGACGGCAACCTTCTGCCTGCCATTGACACTGCCAGTGAGAAAT GGCAGATTGAGCTTCGCGACGCCCAGTCTACTGCTCGAAAGTTGCTGGCA CAAGTCTTGGAAGAGAGAGAAACTCTGCGCAAGTCCCTTGCATCTGCCGC TGACCTGTGGTATATTCTTCAACCTGATTTTCCGGCTGACGACCCCAATG ATGAAGCCCAGCAACCTCCAGACTTCTGCGAAGGTTCCTTTCCAGCCACT CCGGCTCAGCTCTCTGCAGTGCGAGCGTTACACAATATTTCACAGACCCT TTTCTGGGCAGAGTTTACCATGGAAGCCCCGAGTGCTCTTGAACTCGCAA CCACGCACCTTGAAAATATCCACGGCAATGGTCTGGACAAGGTTGTCAAG GGTAATCCCGCTTTACTGGTCGATGCTCATGCACACTTGACCGCTGCTGA AAGATTGCGCGATCTTATTTTGCTTGAAATTCCCACACCCTCCGAAAATC CAAATCCCGTCAAATGGTTTTCAAAGGCCGCAGAGACTCGCCATCTTCTG GAAGATATCGTGCTTCGCGGCATCTTCAGAAACGTAGTGCAGCTCTCGCA GGTAAACCCGTGTATTCTAGTAGCTGGCGCCCGAGTGGTTGAAAGTGAAG AGGCTGAGGATGAATGGTGGACAGATCATATCCACAAAAATGCGCTCGAA GAGCGCGGTGCTGTCGTTCGTGCTTTTGGAACTCATGACTACAAGAAACG TGCATTGAATGCCATTGTGGAGTCCCTCCAGGCGCAGTTTTGGCAGAGGG AACGTGAGTTGCGCACTTTCAAGAACCAAATGGCGAACAGTGACAACGAT ATCAGCCCAAACCTAGATCGCGAATTCCATGTTTCGAGCATACTAGAATG GATTGAGCAGCGACGGTCTGAGACTGAAATTGTACGGCGCTATGTCACCC CATGTTTGCCTCCGTCTTTCCAAGTTTCTCAGTTGTACGAAAGCGAGCTA CATAGACAATTCATGCGACTTCTTAGTCAGCTTCTTCACTTAAACAACGC TGATGGTTCCATGTTACTTTCAGAAGTTGATCTCATCAAGCTCACATCCT GGTACAGTAAGTATAGAAGTGAAGTTGACGAGCAAAGTGAATCGATAGAT TGTTTTCTAGGCGAAAAAGATCGCAGACGTCTCATAGTCGCTTTGCAACA ACACTGTGCACGTAGTGTTATTGCTAGTATCACCTCACAAATTTGTCCGC AGGAGCATGTGGACGTGGGCGTTGAAGCGAAGCAACACTCTGCGGCAAAA CGGAAGCGACTCAGAGTATCCAAAGCTGTATTATGTCGCGGTGATTTGTC GCAGGTTATTATGGACTGCGTCGGCGAGCAAGTGCGGCAGATGTTGGATT TAAAGATGAGGGATCTAGACCAAGCAATTGCCCAAGTGGTTTCCGATATC TTGATAGATTTTCAGACAGAAGTACGCCAGGTTATCGCAAATGACAAAAT TGACTGTACTGCAGAAGATGGAGGGTCGTATCTTTGTGCAACTGCAAATC ATATGGCGAAGTGCCTCGGATTTTCGGAAGAATTGAGGGATTCATTTATA CCACTAGGTCTGGATCACCATCGGCCGGAAATAGAAGAACGGATGGAAAG CGTAATCGATGGTTTTCGATCAACAGCGGCGGAAGCCATCCATTTCCTCA TTGATGGGATGAAGCCAAGCCTAGAAATGCATGTGACACGGCTTTTTGCT CCAAGCACAGGCACGGAGGTAGTACTGGATATGTTAGCGGTTCTAGCCGA CTACTTCAAGGATTACAAAAAGGCTCTTCTTGACTACCATTTCGAGTACT TGGCGATCGAAACTTTGAAGCGCGTTGTTGTTTGGTATCTTGTTCCGTTT TTGCGATTGACACACCCACGTCTTGATGAAAGTGTTGCAAGGCGATACAC CTCCCTTCCCACATTTGAAGATCAGACCGAAGATGTTGAAGAAATTTCTC AAAATGTGAGCAGGCGTCTTAGCACGAGGCGCAGTGACGCTAGCTCGAGA GGAGTTCTCTCCTCAACTGCGGGGTTGGCGTCTATGAGTGGAGGGGCCGT CCTCGCCCTTGTTGAGAAAGACATCTCAAACATATCTGCATTCATGGATA AACAGGTACCACTACATCAACGGAAGCAACTGAAACCAGCATTAGAACCA CTGTGGGCAATCCAAGCATTGTACAGTTGTGATTCTACAGCCCCGGCAAT GGCTGAAGCTTTTCGAGATGCCAAGTTGATGATTGATAGAGCCCTGAGGC CTCTTTGGGCAATGGAATACGGAGCTCACGGCCAATTTGGATTACGGAAC GCTGAGAAAATTTGGGAAACTCGTCACGATTTGAGTCCATCTGTAATCGT AGAAGCCATCAACATGTGTAGAATTAATATCGACAGAATTGACACTCATA CGCCTAGCAGAATGTCAAGTGTCGATGATGGTCGTATATGGAGCTCAAGG TACAGTGATCCAAATGGCTCGTTTTCAGAAAGGTACATGGAGAGATCCGG TGGGTATAATGAGCAAAATCTTTCATCTTCATCTTTGGTGTGGACCCCAA GATCCTGTAGCAGTAGCATTGCCAAGAGGGTATCATTAGAAAACAGGCCT CGAAGATGA back to topprotein sequence of Gvermi7022.t1 >Gvermi7022.t1 ID=Gvermi7022.t1|Name=Gvermi7022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=903bp
MSQIQQEAITLVSDAISGADGNLLPAIDTASEKWQIELRDAQSTARKLLA QVLEERETLRKSLASAADLWYILQPDFPADDPNDEAQQPPDFCEGSFPAT PAQLSAVRALHNISQTLFWAEFTMEAPSALELATTHLENIHGNGLDKVVK GNPALLVDAHAHLTAAERLRDLILLEIPTPSENPNPVKWFSKAAETRHLL EDIVLRGIFRNVVQLSQVNPCILVAGARVVESEEAEDEWWTDHIHKNALE ERGAVVRAFGTHDYKKRALNAIVESLQAQFWQRERELRTFKNQMANSDND ISPNLDREFHVSSILEWIEQRRSETEIVRRYVTPCLPPSFQVSQLYESEL HRQFMRLLSQLLHLNNADGSMLLSEVDLIKLTSWYSKYRSEVDEQSESID CFLGEKDRRRLIVALQQHCARSVIASITSQICPQEHVDVGVEAKQHSAAK RKRLRVSKAVLCRGDLSQVIMDCVGEQVRQMLDLKMRDLDQAIAQVVSDI LIDFQTEVRQVIANDKIDCTAEDGGSYLCATANHMAKCLGFSEELRDSFI PLGLDHHRPEIEERMESVIDGFRSTAAEAIHFLIDGMKPSLEMHVTRLFA PSTGTEVVLDMLAVLADYFKDYKKALLDYHFEYLAIETLKRVVVWYLVPF LRLTHPRLDESVARRYTSLPTFEDQTEDVEEISQNVSRRLSTRRSDASSR GVLSSTAGLASMSGGAVLALVEKDISNISAFMDKQVPLHQRKQLKPALEP LWAIQALYSCDSTAPAMAEAFRDAKLMIDRALRPLWAMEYGAHGQFGLRN AEKIWETRHDLSPSVIVEAINMCRINIDRIDTHTPSRMSSVDDGRIWSSR YSDPNGSFSERYMERSGGYNEQNLSSSSLVWTPRSCSSSIAKRVSLENRP RR* back to topmRNA from alignment at ScGOVlb_24229:972576..975284- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi7022.t1 ID=Gvermi7022.t1|Name=Gvermi7022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2709bp|location=Sequence derived from alignment at ScGOVlb_24229:972576..975284- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTCACAAATCCAGCAAGAGGCTATCACGCTTGTTTCTGACGCCATTTC
CGGCGCTGACGGCAACCTTCTGCCTGCCATTGACACTGCCAGTGAGAAAT
GGCAGATTGAGCTTCGCGACGCCCAGTCTACTGCTCGAAAGTTGCTGGCA
CAAGTCTTGGAAGAGAGAGAAACTCTGCGCAAGTCCCTTGCATCTGCCGC
TGACCTGTGGTATATTCTTCAACCTGATTTTCCGGCTGACGACCCCAATG
ATGAAGCCCAGCAACCTCCAGACTTCTGCGAAGGTTCCTTTCCAGCCACT
CCGGCTCAGCTCTCTGCAGTGCGAGCGTTACACAATATTTCACAGACCCT
TTTCTGGGCAGAGTTTACCATGGAAGCCCCGAGTGCTCTTGAACTCGCAA
CCACGCACCTTGAAAATATCCACGGCAATGGTCTGGACAAGGTTGTCAAG
GGTAATCCCGCTTTACTGGTCGATGCTCATGCACACTTGACCGCTGCTGA
AAGATTGCGCGATCTTATTTTGCTTGAAATTCCCACACCCTCCGAAAATC
CAAATCCCGTCAAATGGTTTTCAAAGGCCGCAGAGACTCGCCATCTTCTG
GAAGATATCGTGCTTCGCGGCATCTTCAGAAACGTAGTGCAGCTCTCGCA
GGTAAACCCGTGTATTCTAGTAGCTGGCGCCCGAGTGGTTGAAAGTGAAG
AGGCTGAGGATGAATGGTGGACAGATCATATCCACAAAAATGCGCTCGAA
GAGCGCGGTGCTGTCGTTCGTGCTTTTGGAACTCATGACTACAAGAAACG
TGCATTGAATGCCATTGTGGAGTCCCTCCAGGCGCAGTTTTGGCAGAGGG
AACGTGAGTTGCGCACTTTCAAGAACCAAATGGCGAACAGTGACAACGAT
ATCAGCCCAAACCTAGATCGCGAATTCCATGTTTCGAGCATACTAGAATG
GATTGAGCAGCGACGGTCTGAGACTGAAATTGTACGGCGCTATGTCACCC
CATGTTTGCCTCCGTCTTTCCAAGTTTCTCAGTTGTACGAAAGCGAGCTA
CATAGACAATTCATGCGACTTCTTAGTCAGCTTCTTCACTTAAACAACGC
TGATGGTTCCATGTTACTTTCAGAAGTTGATCTCATCAAGCTCACATCCT
GGTACAGTAAGTATAGAAGTGAAGTTGACGAGCAAAGTGAATCGATAGAT
TGTTTTCTAGGCGAAAAAGATCGCAGACGTCTCATAGTCGCTTTGCAACA
ACACTGTGCACGTAGTGTTATTGCTAGTATCACCTCACAAATTTGTCCGC
AGGAGCATGTGGACGTGGGCGTTGAAGCGAAGCAACACTCTGCGGCAAAA
CGGAAGCGACTCAGAGTATCCAAAGCTGTATTATGTCGCGGTGATTTGTC
GCAGGTTATTATGGACTGCGTCGGCGAGCAAGTGCGGCAGATGTTGGATT
TAAAGATGAGGGATCTAGACCAAGCAATTGCCCAAGTGGTTTCCGATATC
TTGATAGATTTTCAGACAGAAGTACGCCAGGTTATCGCAAATGACAAAAT
TGACTGTACTGCAGAAGATGGAGGGTCGTATCTTTGTGCAACTGCAAATC
ATATGGCGAAGTGCCTCGGATTTTCGGAAGAATTGAGGGATTCATTTATA
CCACTAGGTCTGGATCACCATCGGCCGGAAATAGAAGAACGGATGGAAAG
CGTAATCGATGGTTTTCGATCAACAGCGGCGGAAGCCATCCATTTCCTCA
TTGATGGGATGAAGCCAAGCCTAGAAATGCATGTGACACGGCTTTTTGCT
CCAAGCACAGGCACGGAGGTAGTACTGGATATGTTAGCGGTTCTAGCCGA
CTACTTCAAGGATTACAAAAAGGCTCTTCTTGACTACCATTTCGAGTACT
TGGCGATCGAAACTTTGAAGCGCGTTGTTGTTTGGTATCTTGTTCCGTTT
TTGCGATTGACACACCCACGTCTTGATGAAAGTGTTGCAAGGCGATACAC
CTCCCTTCCCACATTTGAAGATCAGACCGAAGATGTTGAAGAAATTTCTC
AAAATGTGAGCAGGCGTCTTAGCACGAGGCGCAGTGACGCTAGCTCGAGA
GGAGTTCTCTCCTCAACTGCGGGGTTGGCGTCTATGAGTGGAGGGGCCGT
CCTCGCCCTTGTTGAGAAAGACATCTCAAACATATCTGCATTCATGGATA
AACAGGTACCACTACATCAACGGAAGCAACTGAAACCAGCATTAGAACCA
CTGTGGGCAATCCAAGCATTGTACAGTTGTGATTCTACAGCCCCGGCAAT
GGCTGAAGCTTTTCGAGATGCCAAGTTGATGATTGATAGAGCCCTGAGGC
CTCTTTGGGCAATGGAATACGGAGCTCACGGCCAATTTGGATTACGGAAC
GCTGAGAAAATTTGGGAAACTCGTCACGATTTGAGTCCATCTGTAATCGT
AGAAGCCATCAACATGTGTAGAATTAATATCGACAGAATTGACACTCATA
CGCCTAGCAGAATGTCAAGTGTCGATGATGGTCGTATATGGAGCTCAAGG
TACAGTGATCCAAATGGCTCGTTTTCAGAAAGGTACATGGAGAGATCCGG
TGGGTATAATGAGCAAAATCTTTCATCTTCATCTTTGGTGTGGACCCCAA
GATCCTGTAGCAGTAGCATTGCCAAGAGGGTATCATTAGAAAACAGGCCT
CGAAGATGA back to topCoding sequence (CDS) from alignment at ScGOVlb_24229:972576..975284- >Gvermi7022.t1 ID=Gvermi7022.t1|Name=Gvermi7022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2709bp|location=Sequence derived from alignment at ScGOVlb_24229:972576..975284- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTCACAAATCCAGCAAGAGGCTATCACGCTTGTTTCTGACGCCATTTC CGGCGCTGACGGCAACCTTCTGCCTGCCATTGACACTGCCAGTGAGAAAT GGCAGATTGAGCTTCGCGACGCCCAGTCTACTGCTCGAAAGTTGCTGGCA CAAGTCTTGGAAGAGAGAGAAACTCTGCGCAAGTCCCTTGCATCTGCCGC TGACCTGTGGTATATTCTTCAACCTGATTTTCCGGCTGACGACCCCAATG ATGAAGCCCAGCAACCTCCAGACTTCTGCGAAGGTTCCTTTCCAGCCACT CCGGCTCAGCTCTCTGCAGTGCGAGCGTTACACAATATTTCACAGACCCT TTTCTGGGCAGAGTTTACCATGGAAGCCCCGAGTGCTCTTGAACTCGCAA CCACGCACCTTGAAAATATCCACGGCAATGGTCTGGACAAGGTTGTCAAG GGTAATCCCGCTTTACTGGTCGATGCTCATGCACACTTGACCGCTGCTGA AAGATTGCGCGATCTTATTTTGCTTGAAATTCCCACACCCTCCGAAAATC CAAATCCCGTCAAATGGTTTTCAAAGGCCGCAGAGACTCGCCATCTTCTG GAAGATATCGTGCTTCGCGGCATCTTCAGAAACGTAGTGCAGCTCTCGCA GGTAAACCCGTGTATTCTAGTAGCTGGCGCCCGAGTGGTTGAAAGTGAAG AGGCTGAGGATGAATGGTGGACAGATCATATCCACAAAAATGCGCTCGAA GAGCGCGGTGCTGTCGTTCGTGCTTTTGGAACTCATGACTACAAGAAACG TGCATTGAATGCCATTGTGGAGTCCCTCCAGGCGCAGTTTTGGCAGAGGG AACGTGAGTTGCGCACTTTCAAGAACCAAATGGCGAACAGTGACAACGAT ATCAGCCCAAACCTAGATCGCGAATTCCATGTTTCGAGCATACTAGAATG GATTGAGCAGCGACGGTCTGAGACTGAAATTGTACGGCGCTATGTCACCC CATGTTTGCCTCCGTCTTTCCAAGTTTCTCAGTTGTACGAAAGCGAGCTA CATAGACAATTCATGCGACTTCTTAGTCAGCTTCTTCACTTAAACAACGC TGATGGTTCCATGTTACTTTCAGAAGTTGATCTCATCAAGCTCACATCCT GGTACAGTAAGTATAGAAGTGAAGTTGACGAGCAAAGTGAATCGATAGAT TGTTTTCTAGGCGAAAAAGATCGCAGACGTCTCATAGTCGCTTTGCAACA ACACTGTGCACGTAGTGTTATTGCTAGTATCACCTCACAAATTTGTCCGC AGGAGCATGTGGACGTGGGCGTTGAAGCGAAGCAACACTCTGCGGCAAAA CGGAAGCGACTCAGAGTATCCAAAGCTGTATTATGTCGCGGTGATTTGTC GCAGGTTATTATGGACTGCGTCGGCGAGCAAGTGCGGCAGATGTTGGATT TAAAGATGAGGGATCTAGACCAAGCAATTGCCCAAGTGGTTTCCGATATC TTGATAGATTTTCAGACAGAAGTACGCCAGGTTATCGCAAATGACAAAAT TGACTGTACTGCAGAAGATGGAGGGTCGTATCTTTGTGCAACTGCAAATC ATATGGCGAAGTGCCTCGGATTTTCGGAAGAATTGAGGGATTCATTTATA CCACTAGGTCTGGATCACCATCGGCCGGAAATAGAAGAACGGATGGAAAG CGTAATCGATGGTTTTCGATCAACAGCGGCGGAAGCCATCCATTTCCTCA TTGATGGGATGAAGCCAAGCCTAGAAATGCATGTGACACGGCTTTTTGCT CCAAGCACAGGCACGGAGGTAGTACTGGATATGTTAGCGGTTCTAGCCGA CTACTTCAAGGATTACAAAAAGGCTCTTCTTGACTACCATTTCGAGTACT TGGCGATCGAAACTTTGAAGCGCGTTGTTGTTTGGTATCTTGTTCCGTTT TTGCGATTGACACACCCACGTCTTGATGAAAGTGTTGCAAGGCGATACAC CTCCCTTCCCACATTTGAAGATCAGACCGAAGATGTTGAAGAAATTTCTC AAAATGTGAGCAGGCGTCTTAGCACGAGGCGCAGTGACGCTAGCTCGAGA GGAGTTCTCTCCTCAACTGCGGGGTTGGCGTCTATGAGTGGAGGGGCCGT CCTCGCCCTTGTTGAGAAAGACATCTCAAACATATCTGCATTCATGGATA AACAGGTACCACTACATCAACGGAAGCAACTGAAACCAGCATTAGAACCA CTGTGGGCAATCCAAGCATTGTACAGTTGTGATTCTACAGCCCCGGCAAT GGCTGAAGCTTTTCGAGATGCCAAGTTGATGATTGATAGAGCCCTGAGGC CTCTTTGGGCAATGGAATACGGAGCTCACGGCCAATTTGGATTACGGAAC GCTGAGAAAATTTGGGAAACTCGTCACGATTTGAGTCCATCTGTAATCGT AGAAGCCATCAACATGTGTAGAATTAATATCGACAGAATTGACACTCATA CGCCTAGCAGAATGTCAAGTGTCGATGATGGTCGTATATGGAGCTCAAGG TACAGTGATCCAAATGGCTCGTTTTCAGAAAGGTACATGGAGAGATCCGG TGGGTATAATGAGCAAAATCTTTCATCTTCATCTTTGGTGTGGACCCCAA GATCCTGTAGCAGTAGCATTGCCAAGAGGGTATCATTAGAAAACAGGCCT CGAAGATGA back to top
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