Gvermi7075.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7075.t1
Unique NameGvermi7075.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1483650..1484405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LJN1
Preferred nameRHBDD1
PFAMsRhomboid
Max annot lvl2759|Eukaryota
KEGG koko:K09651
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006508,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010604,GO:0010628,GO:0010941,GO:0010954,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030162,GO:0030163,GO:0030176,GO:0030970,GO:0031224,GO:0031227,GO:0031293,GO:0031323,GO:0031325,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032527,GO:0032879,GO:0033036,GO:0033554,GO:0033619,GO:0034613,GO:0034620,GO:0034644,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0042175,GO:0042176,GO:0042221,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045732,GO:0045862,GO:0046907,GO:0048232,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060548,GO:0065007,GO:0070011,GO:0070613,GO:0070727,GO:0070887,GO:0071214,GO:0071310,GO:0071478,GO:0071482,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0098827,GO:0104004,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903317,GO:1903319,GO:1903513,GO:1904211
Evalue3.31e-30
EggNOG OGsKOG2632@1|root,KOG2632@2759|Eukaryota
Descriptionserine-type endopeptidase activity
COG categoryP
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7075Gvermi7075Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1483650..1484405 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7075.t1.start1Gvermi7075.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1483650..1483652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7075.t1.CDS1Gvermi7075.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1483650..1484405 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7075.t1.exon1Gvermi7075.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1483650..1484405 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7075.t1.stop1Gvermi7075.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1484403..1484405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7075.t1Gvermi7075.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1483650..1484405 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7075.t1 ID=Gvermi7075.t1|Name=Gvermi7075.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=252bp
MNRYVRSRRTHASFYAVALFFQLVDRISKLQHKPPVTLAIIAINMVLFFL
PRLKQVLPSYLKPLISSAERYVSTRRTCLNPRAVLRGERYRLLTSCVIHA
SDIHVLLNSTSLLYKGVALETSLGSLFFFALVVYMGIASHALYVLVAVVW
KSVASPQLMDRCVVGFSGILFGLKVVLNTNPRYGRQADRIFNVRIPAGAA
PWAELVLASALMPRVSFLGHLCGILAGLIYVSVPVVVSTISRRITMPNYW
R*
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spliced messenger RNA

>Gvermi7075.t1 ID=Gvermi7075.t1|Name=Gvermi7075.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=756bp|location=Sequence derived from alignment at ScGOVlb_24229:1483650..1484405+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGCTACGTTCGCTCCCGGCGAACTCACGCGTCATTTTACGCAGT
GGCGCTATTTTTCCAACTAGTCGACCGAATCTCCAAGTTACAGCACAAGC
CACCTGTGACATTGGCCATAATTGCCATCAATATGGTGCTTTTTTTCCTT
CCCCGTCTAAAGCAAGTGCTTCCGTCATACCTGAAACCTCTGATTTCTTC
TGCGGAAAGGTACGTTTCGACTCGACGAACGTGCTTGAATCCCCGAGCAG
TTTTGCGCGGGGAACGTTATCGTCTTTTGACGAGCTGCGTCATCCACGCG
TCGGATATTCATGTTCTTCTTAATTCTACGAGCCTTTTGTACAAAGGAGT
TGCACTAGAGACATCCCTAGGGTCTCTTTTCTTCTTCGCGCTAGTTGTGT
ACATGGGAATCGCATCACACGCATTGTACGTTTTAGTAGCGGTTGTATGG
AAAAGTGTGGCGTCACCTCAGCTGATGGACAGATGTGTGGTAGGCTTCTC
AGGCATCCTTTTCGGACTTAAAGTTGTTTTGAATACGAATCCACGATACG
GACGTCAGGCAGATCGTATCTTCAACGTGCGTATACCTGCAGGTGCAGCG
CCATGGGCAGAACTGGTTCTTGCCAGTGCGCTGATGCCAAGAGTCAGCTT
TCTCGGACATCTTTGCGGCATTCTTGCCGGTCTGATATATGTTTCTGTTC
CTGTTGTTGTGTCGACTATCTCTCGTCGTATTACAATGCCCAACTACTGG
AGATAG
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protein sequence of Gvermi7075.t1

>Gvermi7075.t1 ID=Gvermi7075.t1|Name=Gvermi7075.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=252bp
MNRYVRSRRTHASFYAVALFFQLVDRISKLQHKPPVTLAIIAINMVLFFL
PRLKQVLPSYLKPLISSAERYVSTRRTCLNPRAVLRGERYRLLTSCVIHA
SDIHVLLNSTSLLYKGVALETSLGSLFFFALVVYMGIASHALYVLVAVVW
KSVASPQLMDRCVVGFSGILFGLKVVLNTNPRYGRQADRIFNVRIPAGAA
PWAELVLASALMPRVSFLGHLCGILAGLIYVSVPVVVSTISRRITMPNYW
R*
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mRNA from alignment at ScGOVlb_24229:1483650..1484405+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7075.t1 ID=Gvermi7075.t1|Name=Gvermi7075.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=756bp|location=Sequence derived from alignment at ScGOVlb_24229:1483650..1484405+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGCTACGTTCGCTCCCGGCGAACTCACGCGTCATTTTACGCAGT
GGCGCTATTTTTCCAACTAGTCGACCGAATCTCCAAGTTACAGCACAAGC
CACCTGTGACATTGGCCATAATTGCCATCAATATGGTGCTTTTTTTCCTT
CCCCGTCTAAAGCAAGTGCTTCCGTCATACCTGAAACCTCTGATTTCTTC
TGCGGAAAGGTACGTTTCGACTCGACGAACGTGCTTGAATCCCCGAGCAG
TTTTGCGCGGGGAACGTTATCGTCTTTTGACGAGCTGCGTCATCCACGCG
TCGGATATTCATGTTCTTCTTAATTCTACGAGCCTTTTGTACAAAGGAGT
TGCACTAGAGACATCCCTAGGGTCTCTTTTCTTCTTCGCGCTAGTTGTGT
ACATGGGAATCGCATCACACGCATTGTACGTTTTAGTAGCGGTTGTATGG
AAAAGTGTGGCGTCACCTCAGCTGATGGACAGATGTGTGGTAGGCTTCTC
AGGCATCCTTTTCGGACTTAAAGTTGTTTTGAATACGAATCCACGATACG
GACGTCAGGCAGATCGTATCTTCAACGTGCGTATACCTGCAGGTGCAGCG
CCATGGGCAGAACTGGTTCTTGCCAGTGCGCTGATGCCAAGAGTCAGCTT
TCTCGGACATCTTTGCGGCATTCTTGCCGGTCTGATATATGTTTCTGTTC
CTGTTGTTGTGTCGACTATCTCTCGTCGTATTACAATGCCCAACTACTGG
AGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1483650..1484405+

>Gvermi7075.t1 ID=Gvermi7075.t1|Name=Gvermi7075.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=756bp|location=Sequence derived from alignment at ScGOVlb_24229:1483650..1484405+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGCTACGTTCGCTCCCGGCGAACTCACGCGTCATTTTACGCAGT
GGCGCTATTTTTCCAACTAGTCGACCGAATCTCCAAGTTACAGCACAAGC
CACCTGTGACATTGGCCATAATTGCCATCAATATGGTGCTTTTTTTCCTT
CCCCGTCTAAAGCAAGTGCTTCCGTCATACCTGAAACCTCTGATTTCTTC
TGCGGAAAGGTACGTTTCGACTCGACGAACGTGCTTGAATCCCCGAGCAG
TTTTGCGCGGGGAACGTTATCGTCTTTTGACGAGCTGCGTCATCCACGCG
TCGGATATTCATGTTCTTCTTAATTCTACGAGCCTTTTGTACAAAGGAGT
TGCACTAGAGACATCCCTAGGGTCTCTTTTCTTCTTCGCGCTAGTTGTGT
ACATGGGAATCGCATCACACGCATTGTACGTTTTAGTAGCGGTTGTATGG
AAAAGTGTGGCGTCACCTCAGCTGATGGACAGATGTGTGGTAGGCTTCTC
AGGCATCCTTTTCGGACTTAAAGTTGTTTTGAATACGAATCCACGATACG
GACGTCAGGCAGATCGTATCTTCAACGTGCGTATACCTGCAGGTGCAGCG
CCATGGGCAGAACTGGTTCTTGCCAGTGCGCTGATGCCAAGAGTCAGCTT
TCTCGGACATCTTTGCGGCATTCTTGCCGGTCTGATATATGTTTCTGTTC
CTGTTGTTGTGTCGACTATCTCTCGTCGTATTACAATGCCCAACTACTGG
AGATAG
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